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0195bb58-b6c4-72ce-90be-e4cfcd06635e_full_basic_stats.tsv
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s3://natera-platform-sandbox/users/abshah/daq/pipe9709/20250327_LH00362_0072_A22JH7CLT4/outputs/qc/0195bb58-b6c4-72ce-90be-e4cfcd06635e_full_basic_stats.tsv
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daq-pipe9709-1
Published
Jan 09, 2026 8:28 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
0195bb58-b6c4-72ce-90be-e4cfcd06635e 2163081900 5228899 0.002417 2163081900 0.0 1077668056 0.00105 0.996532 0.001729 0.998271 261 347 476 1027647729 0.953585 1776449 1025871280 2271905 2155581096 372.013714 106.845413 0 0.969943 0.922246 0.922246 323677950150 altera_v2_targets_effective_coding_hg38.bed 995980 0.377652 0.0 0.0 0.227707 0.538758 0.585669 1.269964 1.278639 1.246394 1.11032 1.08914 0.837578 0.7984 0.65213 0.671631 0.90571 0.996966 0.903117 2.793982 0.0 0.620382 0.0 88.490667 0.299076 452.0 25.0 38.0 85.0 152.0 240.0 0.701355 1.0 1604889 487667 0.982828 0.298645 1632930 0.027 7064 -15143.1381 3344.3582 1632931
0195bb58-b6c4-72ce-90be-e4cfcd06635e 2163081900 5228899 0.002417 2163081900 0.0 1077668056 0.001382 0.9962 0.001858 0.998142 261 347 476 1027647729 0.953585 1909799 1025737930 2990164 2154862837 372.013714 106.845413 0 0.969943 0.922246 0.922246 323677950150 altera_v2_targets_effective_noncoding_hg38.bed 995980 0.752539 0.0 0.0 1.772802 0.944689 0.966094 1.121513 1.050704 1.03896 1.05901 1.004961 0.94772 0.787386 0.921804 0.981229 0.869114 0.82133 0.467834 0.025843 0.0 0.383177 0.0 80.881135 0.332529 390.0 21.0 32.0 78.0 139.0 234.0 0.759301 1.0 3182853 795543 0.963003 0.240699 3305132 0.027 7064 -15143.1381 3344.3582 3307258
0195bb58-b6c4-72ce-90be-e4cfcd06635e 2163081900 5228899 0.002417 2163081900 0.0 1077668056 0.021852 0.97573 0.036502 0.963498 261 347 476 1027647729 0.953585 37510764 990136965 47268336 2110584665 372.013714 106.845413 0 0.969943 0.922246 0.922246 323677950150 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 995980 0.205466 0.0 0.963882 0.984046 1.1883 1.131435 1.314255 1.253211 1.255421 1.188279 1.042472 0.920536 0.802087 0.655247 0.613407 0.668002 0.68422 0.608986 1.924834 0.0 1.010025 0.0 90.016216 0.289346 3721.0 24.0 37.0 84.0 162.0 260.0 0.69596 0.999883 31639546 9828537 0.97875 0.30404 32326490 0.027 7064 -15143.1381 3344.3582 32521855
0195bb58-b6c4-72ce-90be-e4cfcd06635e 2163081900 5228899 0.002417 2163081900 0.0 1077668056 0.001051 0.996532 0.001729 0.998271 261 347 476 1027647729 0.953585 1777017 1025870712 2272713 2155580288 372.013714 106.845413 0 0.969943 0.922246 0.922246 323677950150 altera_v2_targets_coding_hg38.bed 995980 0.377352 0.0 0.0 0.227527 0.538331 0.585204 1.260228 1.279209 1.246189 1.10867 1.092706 0.836274 0.798274 0.650839 0.673173 0.920332 1.006617 0.86582 3.956821 0.0 0.60278 0.0 88.484324 0.299142 452.0 25.0 38.0 85.0 152.0 240.0 0.701331 1.0 1606197 488130 0.982774 0.298669 1634351 0.027 7064 -15143.1381 3344.3582 1634355
0195bb58-b6c4-72ce-90be-e4cfcd06635e 2163081900 5228899 0.002417 2163081900 0.0 1077668056 0.001622 0.99596 0.002156 0.997844 261 347 476 1027647729 0.953585 2215176 1025432553 3509457 2154343544 372.013714 106.845413 0 0.969943 0.922246 0.922246 323677950150 altera_v2_targets_noncoding_hg38.bed 995980 0.795482 0.0 0.0 1.345035 1.035841 0.947563 1.113988 1.10124 1.128146 1.104605 0.969839 0.879988 0.746579 0.876742 1.023538 0.981983 0.829813 0.372718 0.041805 0.0 0.42009 0.0 83.309819 0.329477 390.0 21.0 33.0 80.0 143.0 237.0 0.733124 1.0 3733261 1031465 0.965926 0.266876 3864954 0.027 7064 -15143.1381 3344.3582 3868304
0195bb58-b6c4-72ce-90be-e4cfcd06635e 2163081900 5228899 0.002417 2163081900 0.0 1077668056 0.00142 0.996163 0.001896 0.998104 261 347 476 1027647729 0.953585 1947929 1025699800 3070951 2154782050 372.013714 106.845413 0 0.969943 0.922246 0.922246 323677950150 altera_v2_probes_noncoding_postQC_hg38.bed 995980 0.0 0.0 0.0 1.347821 1.116096 1.070057 1.060447 1.015061 0.944763 0.961449 0.943302 1.067981 1.021516 0.962913 0.888826 1.082654 1.018126 0.767358 0.608305 0.0 0.0 0.0 80.974851 0.33242 390.0 21.0 32.0 78.0 139.0 234.0 0.758104 1.0 3293247 827323 0.962892 0.241896 3420162 0.027 7064 -15143.1381 3344.3582 3425160
0195bb58-b6c4-72ce-90be-e4cfcd06635e 2163081900 5228899 0.002417 2163081900 0.0 1077668056 0.00126 0.996323 0.001925 0.998075 261 347 476 1027647729 0.953585 1978097 1025669632 2725456 2155127545 372.013714 106.845413 0 0.969943 0.922246 0.922246 323677950150 altera_v2_probes_coding_postQC_hg38.bed 995980 0.0 0.0 0.0 0.0 0.868378 1.278291 1.288911 1.230727 1.169946 1.061683 0.991882 0.907489 0.852844 0.759191 0.715117 0.711049 0.789234 0.535046 1.001284 0.0 0.0 0.0 87.979772 0.300641 452.0 25.0 38.0 84.0 151.0 241.0 0.705956 1.0 2241997 671743 0.981396 0.294044 2284498 0.027 7064 -15143.1381 3344.3582 2300280
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