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26e895e5-86cb-2a63-e063-0100007f6df4_full_basic_stats.tsv
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s3://natera-platform-sandbox/users/abshah/daq/pipe9709/20250327_LH00362_0072_A22JH7CLT4/outputs/qc/26e895e5-86cb-2a63-e063-0100007f6df4_full_basic_stats.tsv
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daq-pipe9709-1
Published
Jan 09, 2026 8:32 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
26e895e5-86cb-2a63-e063-0100007f6df4 2282773184 2548159 0.001116 2282773184 0.0 1139187352 0.0011 0.997784 0.001692 0.998308 211 334 498 1105762078 0.970659 1870916 1103891162 2510296 2277714729 358.014071 135.821854 0 0.96957 0.923515 0.923515 342033753750 altera_v2_targets_effective_coding_hg38.bed 996666 0.487995 0.0 0.0 0.242999 0.41231 0.982002 1.173006 1.105089 1.133046 1.124052 1.004496 0.916331 0.945664 0.756517 0.728269 0.986422 0.983412 0.283141 0.357092 0.0 0.513757 1.0 93.273455 0.249635 602.0 12.0 35.0 96.0 135.0 160.0 0.554279 1.0 1572759 727832 0.963152 0.445721 1632930 0.4252 4913 -87844.9871 107804.9598 1632931
26e895e5-86cb-2a63-e063-0100007f6df4 2282773184 2548159 0.001116 2282773184 0.0 1139187352 0.001405 0.997479 0.001806 0.998194 211 334 498 1105762078 0.970659 1996935 1103765143 3206609 2277018416 358.014071 135.821854 0 0.96957 0.923515 0.923515 342033753750 altera_v2_targets_effective_noncoding_hg38.bed 996666 0.473893 0.0 0.0 0.934355 0.58913 0.928083 0.844759 0.929181 0.981407 1.17315 1.252601 0.996654 0.906899 0.988479 1.136982 0.90549 1.141112 0.723797 0.03723 0.0 0.27835 0.0 82.291116 0.304977 606.0 9.0 26.0 85.0 128.0 151.0 0.704557 1.0 3095371 976477 0.936535 0.295443 3305132 0.4252 4913 -87844.9871 107804.9598 3307258
26e895e5-86cb-2a63-e063-0100007f6df4 2282773184 2548159 0.001116 2282773184 0.0 1139187352 0.022941 0.975943 0.035988 0.964013 211 334 498 1105762078 0.970659 39793612 1065968466 52369408 2227855617 358.014071 135.821854 0 0.96957 0.923515 0.923515 342033753750 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 996666 0.119146 0.0 1.800613 0.496809 1.247947 1.204584 1.23937 1.255103 1.225247 1.16693 1.032842 0.936804 0.825939 0.685179 0.63261 0.729791 0.697083 0.406275 0.44102 0.0 1.005677 0.0 95.458442 0.221289 5601.0 12.0 37.0 97.0 140.0 167.0 0.53263 0.999763 31213930 15108436 0.965584 0.46737 32326490 0.4252 4913 -87844.9871 107804.9598 32521855
26e895e5-86cb-2a63-e063-0100007f6df4 2282773184 2548159 0.001116 2282773184 0.0 1139187352 0.0011 0.997784 0.001692 0.998308 211 334 498 1105762078 0.970659 1871487 1103890591 2511112 2277713913 358.014071 135.821854 0 0.96957 0.923515 0.923515 342033753750 altera_v2_targets_coding_hg38.bed 996666 0.487817 0.0 0.0 0.242911 0.41216 0.981645 1.164339 1.106074 1.135456 1.121146 1.005285 0.915399 0.946226 0.75519 0.730274 1.004676 0.999628 0.289046 0.359895 0.0 0.497403 1.0 93.263235 0.249649 602.0 12.0 35.0 96.0 135.0 160.0 0.554477 1.0 1574100 728141 0.963135 0.445523 1634351 0.4252 4913 -87844.9871 107804.9598 1634355
26e895e5-86cb-2a63-e063-0100007f6df4 2282773184 2548159 0.001116 2282773184 0.0 1139187352 0.001442 0.997442 0.001843 0.998157 211 334 498 1105762078 0.970659 2037636 1103724442 3292130 2276932895 358.014071 135.821854 0 0.96957 0.923515 0.923515 342033753750 altera_v2_probes_noncoding_postQC_hg38.bed 996666 0.0 0.0 0.0 1.447774 0.996996 0.9053 0.969983 0.977771 0.911963 0.99557 1.003985 1.21028 1.195421 0.98373 0.921164 1.264825 1.140034 1.053558 0.838948 0.0 0.0 0.0 82.328465 0.304202 606.0 9.0 26.0 85.0 128.0 151.0 0.704176 1.0 3203770 1011766 0.93673 0.295824 3420162 0.4252 4913 -87844.9871 107804.9598 3425160
26e895e5-86cb-2a63-e063-0100007f6df4 2282773184 2548159 0.001116 2282773184 0.0 1139187352 0.001312 0.997571 0.001885 0.998115 211 334 498 1105762078 0.970659 2084042 1103678036 2995657 2277229368 358.014071 135.821854 0 0.96957 0.923515 0.923515 342033753750 altera_v2_probes_coding_postQC_hg38.bed 996666 0.0 0.0 0.0 0.0 0.348486 1.710354 1.451165 1.389722 1.235224 0.90699 0.787756 0.816387 0.893713 0.854034 0.801586 0.760637 0.709221 0.662774 2.731231 0.0 0.0 0.0 92.289619 0.256098 626.0 12.0 34.0 95.0 135.0 160.0 0.566842 1.0 2194433 989549 0.960576 0.433158 2284498 0.4252 4913 -87844.9871 107804.9598 2300280
26e895e5-86cb-2a63-e063-0100007f6df4 2282773184 2548159 0.001116 2282773184 0.0 1139187352 0.001625 0.997258 0.002074 0.997926 211 334 498 1105762078 0.970659 2293360 1103468718 3710233 2276514792 358.014071 135.821854 0 0.96957 0.923515 0.923515 342033753750 altera_v2_targets_noncoding_hg38.bed 996666 0.478824 0.0 0.0 0.748509 0.650099 0.887241 0.905312 0.981964 1.081594 1.207464 1.060309 0.902716 0.859299 0.810871 1.322249 1.052056 1.076515 0.72267 0.075704 0.0 0.390098 0.0 83.149103 0.293164 606.0 10.0 27.0 86.0 128.0 150.0 0.701817 1.0 3641976 1152464 0.942308 0.298183 3864954 0.4252 4913 -87844.9871 107804.9598 3868304
8 rows