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0195bb5e-7186-7869-96e9-d7c90f0ec74f_full_basic_stats.tsv
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s3://natera-platform-sandbox/users/abshah/daq/pipe9709/20250327_LH00362_0072_A22JH7CLT4/outputs/qc/0195bb5e-7186-7869-96e9-d7c90f0ec74f_full_basic_stats.tsv
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daq-pipe9709-1
Published
Jan 09, 2026 8:36 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
0195bb5e-7186-7869-96e9-d7c90f0ec74f 2369240558 3397586 0.001434 2369240558 0.0 1181877767 0.000985 0.997581 0.001427 0.998573 201 290 407 1144806592 0.968634 1634104 1143172488 2333663 2363509309 308.408514 102.013939 0 0.972953 0.932297 0.932297 354876445800 altera_v2_targets_effective_coding_hg38.bed 996492 0.433958 0.0 0.0 0.46903 0.516144 0.678964 1.390753 1.487693 1.300196 1.076585 0.97751 0.809676 0.804633 0.648229 0.678809 1.020304 0.970591 0.782346 1.888245 0.0 0.559997 0.0 87.170603 0.230616 867.0 32.0 43.0 88.0 124.0 140.0 0.686413 0.999479 1622892 512065 0.993853 0.313587 1632930 0.0008 6839 -2591.7557 7.7903 1632931
0195bb5e-7186-7869-96e9-d7c90f0ec74f 2369240558 3397586 0.001434 2369240558 0.0 1181877767 0.00134 0.997226 0.001653 0.998347 201 290 407 1144806592 0.968634 1892449 1142914143 3174661 2362668311 308.408514 102.013939 0 0.972953 0.932297 0.932297 354876445800 altera_v2_targets_effective_noncoding_hg38.bed 996492 0.8306 0.0 0.0 0.983359 0.814226 1.016146 1.204712 1.020144 0.944237 1.037724 1.12608 0.919933 0.730869 1.038335 1.001458 0.836987 0.838499 0.58506 0.023968 0.0 0.275463 0.0 82.913946 0.269258 955.0 28.0 38.0 84.0 122.0 137.0 0.729284 0.998971 3265390 894751 0.987976 0.270716 3305132 0.0008 6839 -2591.7557 7.7903 3307258
0195bb5e-7186-7869-96e9-d7c90f0ec74f 2369240558 3397586 0.001434 2369240558 0.0 1181877767 0.020085 0.978481 0.02957 0.97043 201 290 407 1144806592 0.968634 33851951 1110954641 47587200 2318255772 308.408514 102.013939 0 0.972953 0.932297 0.932297 354876445800 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 996492 0.196615 0.0 1.401091 0.70651 1.109479 1.126482 1.315643 1.316696 1.289379 1.198911 1.027972 0.896327 0.774621 0.629799 0.603565 0.66517 0.644301 0.453673 1.457639 0.0 1.119221 0.0 86.830942 0.211738 3517.0 30.0 43.0 87.0 125.0 148.0 0.696538 0.999824 32018185 9809847 0.990463 0.303462 32326490 0.0008 6839 -2591.7557 7.7903 32521855
0195bb5e-7186-7869-96e9-d7c90f0ec74f 2369240558 3397586 0.001434 2369240558 0.0 1181877767 0.000985 0.997581 0.001428 0.998572 201 290 407 1144806592 0.968634 1634717 1143171875 2334635 2363508337 308.408514 102.013939 0 0.972953 0.932297 0.932297 354876445800 altera_v2_targets_coding_hg38.bed 996492 0.433471 0.0 0.0 0.468503 0.515564 0.678202 1.379098 1.487978 1.299842 1.074268 0.983449 0.807329 0.804331 0.647866 0.680151 1.029673 0.980497 0.751599 2.618908 0.0 0.542874 0.0 87.170918 0.230643 867.0 32.0 43.0 88.0 124.0 140.0 0.686334 0.99948 1624200 512641 0.993789 0.313666 1634351 0.0008 6839 -2591.7557 7.7903 1634355
0195bb5e-7186-7869-96e9-d7c90f0ec74f 2369240558 3397586 0.001434 2369240558 0.0 1181877767 0.001569 0.996997 0.001918 0.998082 201 290 407 1144806592 0.968634 2195963 1142610629 3718257 2362124715 308.408514 102.013939 0 0.972953 0.932297 0.932297 354876445800 altera_v2_targets_noncoding_hg38.bed 996492 0.845376 0.0 0.0 0.769917 0.903325 0.957048 1.169013 1.088446 1.047686 1.073279 1.079131 0.806616 0.774033 0.984568 0.974569 0.967888 0.846695 0.539819 0.042918 0.0 0.320556 0.0 84.943313 0.262467 955.0 29.0 39.0 87.0 124.0 139.0 0.700653 0.998951 3819514 1156964 0.988243 0.299347 3864954 0.0008 6839 -2591.7557 7.7903 3868304
0195bb5e-7186-7869-96e9-d7c90f0ec74f 2369240558 3397586 0.001434 2369240558 0.0 1181877767 0.001374 0.997192 0.001687 0.998313 201 290 407 1144806592 0.968634 1931380 1142875212 3255090 2362587882 308.408514 102.013939 0 0.972953 0.932297 0.932297 354876445800 altera_v2_probes_noncoding_postQC_hg38.bed 996492 0.0 0.0 0.0 1.09991 0.96736 0.999119 1.041306 1.023362 0.915563 0.980814 0.962822 1.121477 1.044948 0.960113 0.898982 1.211349 0.989981 0.939882 1.18306 0.0 0.0 0.0 82.778385 0.269574 955.0 28.0 38.0 84.0 122.0 137.0 0.730685 0.998991 3376706 921101 0.987294 0.269315 3420162 0.0008 6839 -2591.7557 7.7903 3425160
0195bb5e-7186-7869-96e9-d7c90f0ec74f 2369240558 3397586 0.001434 2369240558 0.0 1181877767 0.001178 0.997388 0.001611 0.998389 201 290 407 1144806592 0.968634 1843722 1142962870 2791081 2363051891 308.408514 102.013939 0 0.972953 0.932297 0.932297 354876445800 altera_v2_probes_coding_postQC_hg38.bed 996492 0.0 0.0 0.0 0.0 0.958356 1.405844 1.453369 1.326057 1.179168 0.96585 0.908288 0.849506 0.892293 0.78396 0.74471 0.758053 0.736878 0.490637 1.918715 0.0 0.0 0.0 86.418752 0.232777 867.0 31.0 43.0 88.0 124.0 140.0 0.696735 0.999528 2268522 692809 0.993007 0.303265 2284498 0.0008 6839 -2591.7557 7.7903 2300280
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