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0195c486-068d-71ca-a1ec-16604390b168_full_basic_stats.tsv
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s3://natera-platform-sandbox/users/abshah/daq/pipe9709/20250327_LH00362_0072_A22JH7CLT4/outputs/qc/0195c486-068d-71ca-a1ec-16604390b168_full_basic_stats.tsv
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daq-pipe9709-1
Published
Jan 09, 2026 8:47 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
0195c486-068d-71ca-a1ec-16604390b168 2404024078 4055750 0.001687 2404024078 0.0 1198834782 0.001012 0.997301 0.001454 0.998546 202 289 403 1165072772 0.971838 1693979 1163378793 2432231 2397536097 306.321744 99.860451 0 0.973809 0.933408 0.933408 359995249200 altera_v2_targets_effective_coding_hg38.bed 997004 0.515868 0.0 0.0 0.568928 0.491325 0.863709 1.217625 1.1343 1.147339 1.131944 1.039898 0.903089 0.89612 0.71322 0.680123 1.020252 1.055015 0.920676 2.156837 0.0 0.652454 1.0 90.522032 0.216991 444.0 30.0 42.0 93.0 127.0 144.0 0.612276 1.0 1618988 633126 0.991462 0.387724 1632930 0.0015 6670 -2972.5203 24.9971 1632931
0195c486-068d-71ca-a1ec-16604390b168 2404024078 4055750 0.001687 2404024078 0.0 1198834782 0.001347 0.996966 0.001655 0.998345 202 289 403 1165072772 0.971838 1928321 1163144451 3237893 2396730435 306.321744 99.860451 0 0.973809 0.933408 0.933408 359995249200 altera_v2_targets_effective_noncoding_hg38.bed 997004 0.500529 0.0 0.0 1.095115 0.684231 0.931449 0.92697 0.973284 1.028314 1.115955 1.197526 0.968551 0.842199 0.966622 1.120789 0.836331 0.985686 0.690852 0.029217 0.0 0.322664 0.0 84.377194 0.258097 263.0 26.0 36.0 89.0 123.0 136.0 0.680253 1.0 3243990 1056807 0.981501 0.319747 3305132 0.0015 6670 -2972.5203 24.9971 3307258
0195c486-068d-71ca-a1ec-16604390b168 2404024078 4055750 0.001687 2404024078 0.0 1198834782 0.02052 0.977793 0.029929 0.970071 202 289 403 1165072772 0.971838 34869904 1130202868 49331530 2350636798 306.321744 99.860451 0 0.973809 0.933408 0.933408 359995249200 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 997004 0.14256 0.0 1.756154 0.665667 1.234446 1.124375 1.269833 1.281388 1.242651 1.185115 1.035324 0.92879 0.803212 0.650995 0.606795 0.697341 0.674955 0.455498 1.500336 0.0 1.066848 0.0 90.084305 0.199627 3419.0 29.0 43.0 92.0 126.0 145.0 0.638461 0.999866 31961820 11687303 0.988719 0.361539 32326490 0.0015 6670 -2972.5203 24.9971 32521855
0195c486-068d-71ca-a1ec-16604390b168 2404024078 4055750 0.001687 2404024078 0.0 1198834782 0.001012 0.997301 0.001454 0.998546 202 289 403 1165072772 0.971838 1694586 1163378186 2433257 2397535071 306.321744 99.860451 0 0.973809 0.933408 0.933408 359995249200 altera_v2_targets_coding_hg38.bed 997004 0.515767 0.0 0.0 0.568816 0.491229 0.86354 1.20904 1.135461 1.148879 1.130158 1.040952 0.901258 0.896677 0.713715 0.682107 1.027546 1.069005 0.879335 3.022254 0.0 0.634689 1.0 90.521576 0.217041 444.0 30.0 42.0 93.0 127.0 143.0 0.612242 1.0 1620324 633733 0.991417 0.387758 1634351 0.0015 6670 -2972.5203 24.9971 1634355
0195c486-068d-71ca-a1ec-16604390b168 2404024078 4055750 0.001687 2404024078 0.0 1198834782 0.001574 0.996739 0.001914 0.998086 202 289 403 1165072772 0.971838 2230339 1162842433 3783899 2396184429 306.321744 99.860451 0 0.973809 0.933408 0.933408 359995249200 altera_v2_targets_noncoding_hg38.bed 997004 0.514559 0.0 0.0 0.908398 0.772196 0.911351 1.011009 1.022601 1.115638 1.13739 1.058594 0.886033 0.821622 0.80099 1.268347 0.967057 0.933926 0.664484 0.051199 0.0 0.40753 0.0 86.298791 0.250402 263.0 26.0 37.0 91.0 125.0 139.0 0.651446 1.0 3796758 1347146 0.982355 0.348554 3864954 0.0015 6670 -2972.5203 24.9971 3868304
0195c486-068d-71ca-a1ec-16604390b168 2404024078 4055750 0.001687 2404024078 0.0 1198834782 0.001382 0.996931 0.00169 0.99831 202 289 403 1165072772 0.971838 1968843 1163103929 3322428 2396645900 306.321744 99.860451 0 0.973809 0.933408 0.933408 359995249200 altera_v2_probes_noncoding_postQC_hg38.bed 997004 0.0 0.0 0.0 1.269712 1.034341 0.968084 1.002334 0.998736 0.938225 0.994012 0.994581 1.124486 1.095139 0.952222 0.892144 1.189392 1.009479 0.998276 0.798089 0.0 0.0 0.0 84.337119 0.258473 263.0 26.0 36.0 89.0 123.0 136.0 0.68076 1.0 3355529 1091853 0.981102 0.31924 3420162 0.0015 6670 -2972.5203 24.9971 3425160
0195c486-068d-71ca-a1ec-16604390b168 2404024078 4055750 0.001687 2404024078 0.0 1198834782 0.00121 0.997103 0.001641 0.998358 202 289 403 1165072772 0.971838 1912423 1163160349 2908507 2397059821 306.321744 99.860451 0 0.973809 0.933408 0.933408 359995249200 altera_v2_probes_coding_postQC_hg38.bed 997004 0.0 0.0 0.0 0.0 0.471757 1.597403 1.39342 1.362632 1.238531 0.952525 0.837528 0.84883 0.884007 0.798035 0.75275 0.738787 0.658334 0.571368 2.13646 0.0 0.0 0.0 89.990955 0.221183 444.0 30.0 42.0 93.0 127.0 143.0 0.618099 1.0 2261788 872453 0.990059 0.381901 2284498 0.0015 6670 -2972.5203 24.9971 2300280
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