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0195b44e-bbbc-7007-a0ad-3398931e3fe0_full_basic_stats.tsv
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s3://natera-platform-sandbox/users/abshah/daq/pipe9709/20250327_LH00362_0072_A22JH7CLT4/outputs/qc/0195b44e-bbbc-7007-a0ad-3398931e3fe0_full_basic_stats.tsv
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daq-pipe9709-rs-2
Published
Jan 10, 2026 6:22 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
0195b44e-bbbc-7007-a0ad-3398931e3fe0 2942129758 3760005 0.001278 2942129758 0.0 1467868734 0.000972 0.99775 0.001383 0.998617 187 277 388 1402853576 0.955708 1940429 1400913147 2859541 2935510212 292.780964 98.549194 0 0.971643 0.930464 0.930464 440755462950 altera_v2_targets_effective_coding_hg38.bed 994611 0.629134 0.0 0.0 0.819268 0.701565 0.872817 1.250034 1.277664 1.225229 1.117859 1.061302 0.863142 0.801966 0.665609 0.673683 0.979025 0.996424 0.88871 1.542051 0.0 0.643131 5.0 105.558153 0.289388 609.0 29.0 39.0 108.0 165.0 187.0 0.411261 1.0 1616420 961370 0.989889 0.588739 1632930 0.0012 7525 -3754.5415 20.9097 1632931
0195b44e-bbbc-7007-a0ad-3398931e3fe0 2942129758 3760005 0.001278 2942129758 0.0 1467868734 0.001288 0.997434 0.001597 0.998403 187 277 388 1402853576 0.955708 2240058 1400613518 3789637 2934580116 292.780964 98.549194 0 0.971643 0.930464 0.930464 440755462950 altera_v2_targets_effective_noncoding_hg38.bed 994611 0.744832 0.0 0.0 1.416101 0.947244 1.09377 1.150468 1.068368 1.020201 1.04857 1.004735 0.898012 0.747108 0.927103 0.984546 0.868396 0.765273 0.637951 0.027519 0.0 0.405932 0.0 95.527046 0.341107 794.0 26.0 34.0 100.0 156.0 177.0 0.498703 0.999994 3239143 1656854 0.980034 0.501297 3305132 0.0012 7525 -3754.5415 20.9097 3307258
0195b44e-bbbc-7007-a0ad-3398931e3fe0 2942129758 3760005 0.001278 2942129758 0.0 1467868734 0.019696 0.979026 0.028409 0.971591 187 277 388 1402853576 0.955708 39853354 1363000222 57948858 2880420895 292.780964 98.549194 0 0.971643 0.930464 0.930464 440755462950 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 994611 0.213901 0.0 1.24579 1.011306 1.2519 1.091333 1.289808 1.28897 1.273303 1.205586 1.039154 0.908592 0.779831 0.635547 0.602001 0.656773 0.638871 0.565618 1.245419 0.0 1.049215 0.0 104.73191 0.267413 4259.0 28.0 39.0 106.0 164.0 188.0 0.427824 0.999806 31875992 18496439 0.986064 0.572176 32326490 0.0012 7525 -3754.5415 20.9097 32521855
0195b44e-bbbc-7007-a0ad-3398931e3fe0 2942129758 3760005 0.001278 2942129758 0.0 1467868734 0.000972 0.99775 0.001384 0.998616 187 277 388 1402853576 0.955708 1941352 1400912224 2861035 2935508718 292.780964 98.549194 0 0.971643 0.930464 0.930464 440755462950 altera_v2_targets_coding_hg38.bed 994611 0.628925 0.0 0.0 0.818995 0.701332 0.872527 1.241338 1.278769 1.226248 1.116164 1.064311 0.860484 0.802038 0.667428 0.675524 0.974611 0.997545 0.866661 1.999686 0.0 0.626101 5.0 105.57106 0.28938 609.0 29.0 39.0 108.0 165.0 187.0 0.411115 1.0 1617744 962445 0.989839 0.588885 1634351 0.0012 7525 -3754.5415 20.9097 1634355
0195b44e-bbbc-7007-a0ad-3398931e3fe0 2942129758 3760005 0.001278 2942129758 0.0 1467868734 0.001548 0.997174 0.001892 0.998108 187 277 388 1402853576 0.955708 2653753 1400199823 4555284 2933814469 292.780964 98.549194 0 0.971643 0.930464 0.930464 440755462950 altera_v2_targets_noncoding_hg38.bed 994611 0.753535 0.0 0.0 1.157249 1.054512 1.051592 1.170687 1.124018 1.065588 1.078912 1.016778 0.851115 0.795009 0.847823 0.982079 0.940345 0.742133 0.552923 0.04056 0.0 0.472579 0.0 101.085124 0.337877 794.0 27.0 35.0 105.0 167.0 192.0 0.451634 0.999995 3793970 2119409 0.981634 0.548366 3864954 0.0012 7525 -3754.5415 20.9097 3868304
0195b44e-bbbc-7007-a0ad-3398931e3fe0 2942129758 3760005 0.001278 2942129758 0.0 1467868734 0.001323 0.997399 0.001632 0.998368 187 277 388 1402853576 0.955708 2289606 1400563970 3891797 2934477956 292.780964 98.549194 0 0.971643 0.930464 0.930464 440755462950 altera_v2_probes_noncoding_postQC_hg38.bed 994611 0.0 0.0 0.0 1.062797 1.094025 1.104327 1.0961 1.060338 0.986217 0.966521 0.921696 0.937147 0.857744 0.900658 0.87908 1.136864 0.954977 0.799344 0.807175 0.0 0.0 0.0 95.632593 0.340451 794.0 26.0 35.0 100.0 156.0 178.0 0.498144 0.999994 3350852 1716429 0.979735 0.501856 3420162 0.0012 7525 -3754.5415 20.9097 3425160
0195b44e-bbbc-7007-a0ad-3398931e3fe0 2942129758 3760005 0.001278 2942129758 0.0 1467868734 0.001163 0.997559 0.001569 0.998431 187 277 388 1402853576 0.955708 2200430 1400653146 3421650 2934948103 292.780964 98.549194 0 0.971643 0.930464 0.930464 440755462950 altera_v2_probes_coding_postQC_hg38.bed 994611 0.0 0.0 0.0 0.0 0.867929 1.23239 1.256614 1.209731 1.162091 1.058828 0.982647 0.925367 0.88092 0.750253 0.744904 0.785323 0.750545 0.458173 0.546549 0.0 0.0 0.0 104.532813 0.290888 609.0 29.0 39.0 107.0 163.0 185.0 0.419601 1.0 2259379 1325921 0.989005 0.580399 2284498 0.0012 7525 -3754.5415 20.9097 2300280
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