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0195c48b-57e7-7a68-b66a-317a3e9dc16d_full_basic_stats.tsv
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s3://natera-platform-sandbox/users/abshah/daq/pipe9709/20250327_LH00362_0072_A22JH7CLT4/outputs/qc/0195c48b-57e7-7a68-b66a-317a3e9dc16d_full_basic_stats.tsv
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daq-pipe9709-rs-2
Published
Jan 10, 2026 6:50 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
0195c48b-57e7-7a68-b66a-317a3e9dc16d 3025796492 47270572 0.015623 3025796492 0.0 1487097647 0.000643 0.983735 0.001042 0.998958 138 248 346 1183267286 0.795689 1232954 1182034332 1945160 2976580760 252.246653 96.304283 0 0.968404 0.924014 0.924014 446778888000 altera_v2_targets_effective_coding_hg38.bed 963665 0.697776 0.0 0.0 0.507593 1.468909 0.924666 1.093431 1.081492 1.084325 0.968002 0.977489 0.98135 1.026724 0.920968 0.877856 1.052107 0.810116 0.752431 1.321774 0.0 0.610581 0.0 68.017529 0.29074 388.0 23.0 33.0 64.0 116.0 148.0 0.892158 1.0 1585187 176099 0.970762 0.107842 1632930 0.0745 6691 -20790.2276 9314.9324 1632931
0195c48b-57e7-7a68-b66a-317a3e9dc16d 3025796492 47270572 0.015623 3025796492 0.0 1487097647 0.000931 0.983446 0.001302 0.998698 138 248 346 1183267286 0.795689 1540053 1181727233 2817935 2975707985 252.246653 96.304283 0 0.968404 0.924014 0.924014 446778888000 altera_v2_targets_effective_noncoding_hg38.bed 963665 1.134452 0.0 0.0 1.66559 1.081977 1.002605 1.087108 1.027298 1.043881 1.017538 0.969794 0.978271 0.873241 0.918002 1.017429 0.88984 0.845644 0.630257 0.080969 0.0 0.594154 0.0 67.19616 0.319212 624.0 21.0 32.0 62.0 123.0 174.0 0.88578 1.0 3181393 377513 0.962562 0.11422 3305132 0.0745 6691 -20790.2276 9314.9324 3307258
0195c48b-57e7-7a68-b66a-317a3e9dc16d 3025796492 47270572 0.015623 3025796492 0.0 1487097647 0.012487 0.97189 0.020454 0.979546 138 248 346 1183267286 0.795689 24202360 1159064926 37784430 2940741490 252.246653 96.304283 0 0.968404 0.924014 0.924014 446778888000 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 963665 0.201697 0.0 1.2472 1.272856 1.084515 1.078964 1.099887 1.096611 1.090471 1.075548 1.042953 0.998689 0.931511 0.828819 0.752383 0.790802 0.756164 0.70507 1.214102 0.0 1.03586 0.0 64.234706 0.271161 2098.0 20.0 31.0 61.0 108.0 137.0 0.922712 0.999973 31068787 2498464 0.961094 0.077288 32326490 0.0745 6691 -20790.2276 9314.9324 32521855
0195c48b-57e7-7a68-b66a-317a3e9dc16d 3025796492 47270572 0.015623 3025796492 0.0 1487097647 0.000643 0.983734 0.001043 0.998957 138 248 346 1183267286 0.795689 1233588 1182033698 1946470 2976579450 252.246653 96.304283 0 0.968404 0.924014 0.924014 446778888000 altera_v2_targets_coding_hg38.bed 963665 0.697748 0.0 0.0 0.507573 1.46885 0.924628 1.088813 1.082255 1.084251 0.967922 0.978759 0.980972 1.026474 0.920333 0.880333 1.059659 0.766278 0.811823 1.250347 0.0 0.600406 0.0 68.03536 0.290903 388.0 23.0 33.0 64.0 116.0 149.0 0.892006 1.0 1586467 176500 0.970702 0.107994 1634351 0.0745 6691 -20790.2276 9314.9324 1634355
0195c48b-57e7-7a68-b66a-317a3e9dc16d 3025796492 47270572 0.015623 3025796492 0.0 1487097647 0.001216 0.983162 0.001632 0.998368 138 248 346 1183267286 0.795689 1931393 1181335893 3677868 2974848052 252.246653 96.304283 0 0.968404 0.924014 0.924014 446778888000 altera_v2_targets_noncoding_hg38.bed 963665 1.030206 0.0 0.0 1.261584 1.158969 1.031055 1.070651 1.035957 1.063833 1.024002 1.003442 0.96857 0.886887 0.893972 1.019728 0.990499 0.857416 0.506645 0.145032 0.0 0.603348 0.0 77.45708 0.407995 915.0 21.0 32.0 65.0 177.0 235.0 0.804764 0.999985 3730868 754578 0.965307 0.195236 3864954 0.0745 6691 -20790.2276 9314.9324 3868304
0195c48b-57e7-7a68-b66a-317a3e9dc16d 3025796492 47270572 0.015623 3025796492 0.0 1487097647 0.000956 0.983421 0.001331 0.998669 138 248 346 1183267286 0.795689 1575397 1181691889 2893379 2975632541 252.246653 96.304283 0 0.968404 0.924014 0.924014 446778888000 altera_v2_probes_noncoding_postQC_hg38.bed 963665 0.0 0.0 0.0 1.037419 1.043902 1.072616 1.071453 1.034328 1.000386 0.96862 0.946705 0.943963 0.955731 0.928398 0.910742 1.053275 0.937665 0.735141 0.568885 0.0 0.0 0.0 67.207372 0.320728 624.0 20.0 31.0 62.0 123.0 174.0 0.884946 1.0 3287009 393504 0.961068 0.115054 3420162 0.0745 6691 -20790.2276 9314.9324 3425160
0195c48b-57e7-7a68-b66a-317a3e9dc16d 3025796492 47270572 0.015623 3025796492 0.0 1487097647 0.000778 0.9836 0.001199 0.998801 138 248 346 1183267286 0.795689 1418461 1181848825 2353530 2976172390 252.246653 96.304283 0 0.968404 0.924014 0.924014 446778888000 altera_v2_probes_coding_postQC_hg38.bed 963665 0.0 0.0 0.0 0.0 1.041359 1.085636 1.080822 1.05141 0.993784 0.989768 0.978637 1.023979 1.012456 0.941777 0.909749 1.020655 0.994798 0.693648 0.849644 0.0 0.0 0.0 68.112849 0.291878 388.0 23.0 33.0 64.0 116.0 151.0 0.891504 1.0 2215864 247860 0.969957 0.108496 2284498 0.0745 6691 -20790.2276 9314.9324 2300280
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