cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119839184, elapsed 0.0s, est remaining 0.7s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 1809
progress 10% @chr2:20012409, elapsed 0.1s, est remaining 0.7s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 11843
progress 15% @chr2:189010178, elapsed 0.1s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 22239
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.6s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 5706
progress 25% @chr4:88431162, elapsed 0.2s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 15962
progress 30% @chr5:147373169, elapsed 0.2s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 26001
progress 35% @chr6:127195823, elapsed 0.2s, est remaining 0.4s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 35951
progress 40% @chr7:128830638, elapsed 0.3s, est remaining 0.4s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 45438
progress 45% @chr9:1056216, elapsed 0.3s, est remaining 0.4s, peak mem 283MB, user 0.0s, sys 0.0s, output queue size 54805
progress 50% @chr10:32287098, elapsed 0.3s, est remaining 0.3s, peak mem 292MB, user 0.0s, sys 0.0s, output queue size 64743
progress 55% @chr11:48245104, elapsed 0.4s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 75208
progress 60% @chr12:21915668, elapsed 0.4s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 84759
progress 65% @chr13:49280509, elapsed 0.4s, est remaining 0.2s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 95816
progress 70% @chr15:42669158, elapsed 0.5s, est remaining 0.2s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 105847
progress 75% @chr16:30946730, elapsed 0.5s, est remaining 0.2s, peak mem 302MB, user 0.0s, sys 0.0s, output queue size 115411
progress 80% @chr17:42553439, elapsed 0.6s, est remaining 0.1s, peak mem 310MB, user 0.0s, sys 0.0s, output queue size 10640
progress 85% @chr19:5657241, elapsed 0.6s, est remaining 0.1s, peak mem 337MB, user 0.0s, sys 0.1s, output queue size 21043
progress 90% @chr19:55685396, elapsed 0.6s, est remaining 0.1s, peak mem 337MB, user 0.0s, sys 0.1s, output queue size 30545
progress 95% @chr22:36930612, elapsed 1.0s, est remaining 0.1s, peak mem 2530MB, user 6.0s, sys 1.9s, output queue size 3229
progress 100% @chr21:41501693, elapsed 1.0s, est remaining 0.0s, peak mem 2530MB, user 6.1s, sys 1.9s, output queue size 12805
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 52292891
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.678 user 0.072 sys 2.088 real
done: 1 calls 0.239 user 0.139 sys 0.380 real
execute: 1 calls 0.008 user 0.001 sys 0.999 real
fetch_reads: 208647 calls 0.059 user 0.000 sys 0.149 real
fetch_ref: 2072 calls 0.011 user 0.006 sys 0.017 real
fetch_vcf: 2072 calls 0.812 user 0.039 sys 0.935 real
idle: 92 calls 0.005 user 0.015 sys 31.576 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.276 user 1.753 sys 6.895 real
overall: 2653040640 mem 9.471 user 14.658 sys 2.366 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory