cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.0s, est remaining 0.9s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 3578
progress 10% @chr2:20012409, elapsed 0.1s, est remaining 0.8s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 8013
progress 15% @chr2:189051320, elapsed 0.1s, est remaining 0.8s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 4400
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.7s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 14883
progress 25% @chr4:88413077, elapsed 0.2s, est remaining 0.7s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 25138
progress 30% @chr5:146600291, elapsed 0.3s, est remaining 0.6s, peak mem 171MB, user 0.0s, sys 0.0s, output queue size 35175
progress 35% @chr6:127137390, elapsed 0.3s, est remaining 0.6s, peak mem 171MB, user 0.0s, sys 0.0s, output queue size 45125
progress 40% @chr7:128775439, elapsed 0.3s, est remaining 0.5s, peak mem 171MB, user 0.0s, sys 0.0s, output queue size 54611
progress 45% @chr9:977002, elapsed 0.4s, est remaining 0.5s, peak mem 293MB, user 0.0s, sys 0.0s, output queue size 7278
progress 50% @chr10:32293592, elapsed 0.4s, est remaining 0.4s, peak mem 293MB, user 0.0s, sys 0.0s, output queue size 17210
progress 55% @chr11:48263861, elapsed 0.5s, est remaining 0.4s, peak mem 293MB, user 0.0s, sys 0.0s, output queue size 27675
progress 60% @chr12:21910826, elapsed 0.5s, est remaining 0.3s, peak mem 293MB, user 0.0s, sys 0.0s, output queue size 37225
progress 65% @chr13:49168613, elapsed 0.5s, est remaining 0.3s, peak mem 293MB, user 0.0s, sys 0.0s, output queue size 48275
progress 70% @chr15:42684116, elapsed 0.6s, est remaining 0.2s, peak mem 293MB, user 0.0s, sys 0.0s, output queue size 58312
progress 75% @chr16:30928467, elapsed 0.6s, est remaining 0.2s, peak mem 293MB, user 0.0s, sys 0.0s, output queue size 67879
progress 80% @chr17:42487155, elapsed 0.7s, est remaining 0.2s, peak mem 293MB, user 0.0s, sys 0.0s, output queue size 78563
progress 85% @chr19:5687503, elapsed 0.7s, est remaining 0.1s, peak mem 329MB, user 0.0s, sys 0.1s, output queue size 88978
progress 90% @chr19:55649408, elapsed 0.8s, est remaining 0.1s, peak mem 329MB, user 0.0s, sys 0.1s, output queue size 98476
progress 95% @chr22:36991179, elapsed 1.1s, est remaining 0.1s, peak mem 2513MB, user 6.2s, sys 2.2s, output queue size 3220
progress 100% @chrY:24851579, elapsed 1.2s, est remaining 0.0s, peak mem 2513MB, user 6.3s, sys 2.2s, output queue size 3442
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395690
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.804 user 0.104 sys 2.237 real
done: 1 calls 0.374 user 0.177 sys 0.559 real
execute: 1 calls 0.015 user 0.002 sys 1.168 real
fetch_reads: 208647 calls 0.098 user 0.000 sys 0.155 real
fetch_ref: 2042 calls 0.001 user 0.012 sys 0.025 real
fetch_vcf: 2042 calls 0.897 user 0.046 sys 0.987 real
idle: 92 calls 0.002 user 0.001 sys 31.911 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 4.269 user 2.051 sys 6.913 real
overall: 2635321344 mem 10.298 user 10.834 sys 2.626 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory