cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:152000001, elapsed 0.1s, est remaining 2.3s, peak mem 324MB, user 0.3s, sys 2.9s, output queue size 14
progress 10% @chr2:75000001, elapsed 0.2s, est remaining 2.0s, peak mem 553MB, user 0.5s, sys 5.7s, output queue size 41
progress 15% @chr2:233000001, elapsed 0.3s, est remaining 1.8s, peak mem 633MB, user 0.7s, sys 8.4s, output queue size 16
progress 20% @chr3:155000001, elapsed 0.4s, est remaining 1.6s, peak mem 748MB, user 0.9s, sys 11.0s, output queue size 12
progress 25% @chr4:117000001, elapsed 0.5s, est remaining 1.5s, peak mem 840MB, user 1.1s, sys 13.8s, output queue size 5
progress 30% @chr5:75000001, elapsed 0.6s, est remaining 1.4s, peak mem 900MB, user 1.3s, sys 16.6s, output queue size 12
progress 35% @chr6:66000001, elapsed 0.7s, est remaining 1.3s, peak mem 966MB, user 1.5s, sys 19.3s, output queue size 2
progress 40% @chr7:53000001, elapsed 0.8s, est remaining 1.2s, peak mem 1026MB, user 1.7s, sys 22.3s, output queue size 12
progress 45% @chr8:58000001, elapsed 0.9s, est remaining 1.1s, peak mem 1132MB, user 2.0s, sys 25.0s, output queue size 13
progress 50% @chr9:76000001, elapsed 1.0s, est remaining 1.0s, peak mem 1186MB, user 2.2s, sys 28.0s, output queue size 11
progress 55% @chr10:94000001, elapsed 1.1s, est remaining 0.9s, peak mem 1234MB, user 2.4s, sys 31.0s, output queue size 10
progress 60% @chr11:107000001, elapsed 1.2s, est remaining 0.8s, peak mem 1279MB, user 2.6s, sys 34.4s, output queue size 16
progress 65% @chr13:15000001, elapsed 1.3s, est remaining 0.7s, peak mem 1353MB, user 2.9s, sys 37.6s, output queue size 2
progress 70% @chr14:62000001, elapsed 1.5s, est remaining 0.6s, peak mem 1411MB, user 3.1s, sys 40.9s, output queue size 4
progress 75% @chr16:15000001, elapsed 1.6s, est remaining 0.5s, peak mem 1458MB, user 3.3s, sys 44.0s, output queue size 3
progress 80% @chr17:79000001, elapsed 1.7s, est remaining 0.4s, peak mem 1488MB, user 3.5s, sys 47.2s, output queue size 16
progress 85% @chr20:24000001, elapsed 1.8s, est remaining 0.3s, peak mem 1536MB, user 3.7s, sys 50.4s, output queue size 5
progress 90% @chrX:39000001, elapsed 2.1s, est remaining 0.2s, peak mem 2766MB, user 6.8s, sys 51.9s, output queue size 114
progress 95% @chrY:44000001, elapsed 2.2s, est remaining 0.1s, peak mem 2787MB, user 9.1s, sys 52.7s, output queue size 276
progress 100% @chr21:41000001, elapsed 4.2s, est remaining 0.0s, peak mem 2808MB, user 21.3s, sys 54.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52292891
output file size: 74321441
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.003 user 0.003 sys 0.023 real
ReadQualCal::delayed_init: 1 calls 0.003 user 0.001 sys 0.030 real
ReadQualCal::init: 1 calls 0.009 user 0.001 sys 0.006 real
advance: 3219322 calls 1.677 user 6.866 sys 8.345 real
done: 1 calls 0.293 user 0.317 sys 0.613 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.000 user 0.008 sys 4.304 real
fetch: 3219322 calls 0.232 user 6.239 sys 6.792 real
fetch_reads: 3219322 calls 0.364 user 6.838 sys 6.881 real
fetch_ref: 13318 calls 0.051 user 0.030 sys 0.056 real
fetch_vcf: 13318 calls 1.221 user 0.098 sys 1.400 real
idle: 2158 calls 1.752 user 0.328 sys 80.700 real
init: 1 calls 0.003 user 0.001 sys 0.036 real
update: 13537 calls 5.966 user 1.076 sys 7.929 real
write: 3219322 calls 8.121 user 6.673 sys 14.643 real
overall: 2944897024 mem 26.447 user 55.165 sys 5.627 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.028 user 0.002 sys 0.027 real
done: 1 calls 0.029 user 0.031 sys 0.058 real
idle: 60 calls 0.002 user 0.000 sys 31.332 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83664896 mem 0.041 user 0.068 sys 1.055 real