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Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume 2c41ec20-2c76-473c-b1c5-9ed61fd416fd -name daq-sambamba-test-i4i-1
Error Report
Error executing process > 'SAMBAMBA_MARKDUP (dna_s1343)'
Caused by:
K8s pod image cannot be pulled -- rpc error: code = NotFound desc = failed to pull and unpack image "292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/sambamba_markdup:1.0.1": failed to resolve image: 292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/sambamba_markdup:1.0.1: not found
Command executed:
sambamba markdup \
--nthreads 8 \
--tmpdir . \
\
dna_s1343.bam \
dna_s1343.md.bam
samtools index -@ 8 dna_s1343.md.bam
cat <<-END_VERSIONS > versions.yml
"SAMBAMBA_MARKDUP":
sambamba: $(sambamba --version 2>&1 | head -1 | sed 's/sambamba //')
samtools: $(samtools --version | head -1 | sed 's/samtools //')
END_VERSIONS
Command exit status:
-
Command output:
(empty)
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/e9bad60da593b9232c2e1d38b1b69a
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/sambamba_markdup:1.0.1
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- 2c41ec20-2c76-473c-b1c5-9ed61fd416fd
- Source
- /app/modules/local/sambamba_markdup/run.nf
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Submitted By
- abshah
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $0.00
- Outputs
- 3 MB
- Started
- Jan 17, 2026 12:00 AM
- Completed
- Jan 17, 2026 12:03 AM
- Duration
- 3m 21s
- Post-workflow Transfer
- 0s
- Exit Status
- -
- Peak Tasks / CPU / Mem
- 1 / 8 / 32.0 GB