Error executing process > 'DAQ:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (ngscheckmate)'

Caused by:
  Process `DAQ:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (ngscheckmate)` terminated with an error exit status (1)


Command executed:

  # Decompress VCFs if needed
  for VCFGZ in *.vcf.gz; do
      gunzip -cdf $VCFGZ > $(basename $VCFGZ .gz)
  done
  
  # Run NGSCheckMate
  NCM_REF="./Homo_sapiens_assembly38.fasta" ncm.py -V -d . -bed SNP_GRCh38_hg38_wChr.bed -O . -N ngscheckmate 
  
  # Clean up decompressed VCFs
  rm -f *.vcf
  
  cat <<-END_VERSIONS > versions.yml
  "DAQ:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM":
      ngscheckmate: $(ncm.py --help | sed "7!d;s/ *Ensuring Sample Identity v//g")
  END_VERSIONS

Command exit status:
  1

Command output:
  Set the path to your reference file with the NCM_REF environment variable
  eg. export NCM_REF=/<path>/<to>/<reference>
  
  Generate Data Set from .
  using this bed file : SNP_GRCh38_hg38_wChr.bed

Command error:
  Traceback (most recent call last):
    File "/usr/local/NGSCheckMate/ncm.py", line 1465, in <module>
      createDataSetFromDir(base_dir,bedFile)
    File "/usr/local/NGSCheckMate/ncm.py", line 222, in createDataSetFromDir
      real_depth[file] = depth[file] / float(real_count[file])
                         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
  ZeroDivisionError: float division by zero

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/c771a38b9d8169fdbcc0932d1bd223

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/ngscheckmate:1.0.1--py312pl5321h577a1d6_4

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line