File Info

Filename
postdedup_qc.json
Full Path
s3://natera-platform-sandbox/users/pgrauman/daq-umi-test/smoke-test/reports/postdedup_qc.json
Size
24.8 KB
Workflow Run
daq-umi-smoke-test11
Published
Feb 06, 2026 7:44 AM
{
  "metadata": {
    "version": "1.0",
    "mode": "postdedup",
    "tools": [
      "samtools",
      "mosdepth",
      "picard"
    ]
  },
  "samples": {
    "filler-D0000668": {
      "samtools": {
        "raw_total_sequences": 1465077,
        "reads_mapped": 1465077,
        "reads_unmapped": 0,
        "reads_properly_paired": 1377320,
        "reads_duplicated": 0,
        "reads_mq0": 59507,
        "bases_mapped_cigar": 204132584,
        "mismatches": 1643376,
        "error_rate": 0.008050533,
        "average_length": 140,
        "average_quality": 39.1,
        "insert_size_average": 208.6,
        "insert_size_std_dev": 97.8,
        "properly_paired_percent": 94.0,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.05,
        "mean_coverage_target": 2.22
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 177,
          "mean_insert_size": 193.35083
        },
        "panels": {}
      }
    },
    "filler-D0000555": {
      "samtools": {
        "raw_total_sequences": 1272423,
        "reads_mapped": 1272423,
        "reads_unmapped": 0,
        "reads_properly_paired": 1190537,
        "reads_duplicated": 0,
        "reads_mq0": 51924,
        "bases_mapped_cigar": 179343812,
        "mismatches": 1383140,
        "error_rate": 0.007712226,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 211.6,
        "insert_size_std_dev": 95.4,
        "properly_paired_percent": 93.6,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.04,
        "mean_coverage_target": 1.95
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 178,
          "mean_insert_size": 190.781351
        },
        "panels": {}
      }
    },
    "filler-D0000674": {
      "samtools": {
        "raw_total_sequences": 1672692,
        "reads_mapped": 1672692,
        "reads_unmapped": 0,
        "reads_properly_paired": 1641050,
        "reads_duplicated": 0,
        "reads_mq0": 67049,
        "bases_mapped_cigar": 235772017,
        "mismatches": 1813367,
        "error_rate": 0.007691188,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 217.4,
        "insert_size_std_dev": 95.0,
        "properly_paired_percent": 98.1,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.05,
        "mean_coverage_target": 2.59
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 181,
          "mean_insert_size": 202.941023
        },
        "panels": {}
      }
    },
    "NTC-D0002235": {
      "samtools": {
        "raw_total_sequences": 2126101,
        "reads_mapped": 2126101,
        "reads_unmapped": 0,
        "reads_properly_paired": 1829636,
        "reads_duplicated": 0,
        "reads_mq0": 89493,
        "bases_mapped_cigar": 298725345,
        "mismatches": 2327223,
        "error_rate": 0.007790511,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 197.1,
        "insert_size_std_dev": 78.4,
        "properly_paired_percent": 86.1,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.06,
        "mean_coverage_target": 3.22
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 174,
          "mean_insert_size": 178.929808
        },
        "panels": {}
      }
    },
    "T13-D0003273": {
      "samtools": {
        "raw_total_sequences": 2248634,
        "reads_mapped": 2248634,
        "reads_unmapped": 0,
        "reads_properly_paired": 2022330,
        "reads_duplicated": 0,
        "reads_mq0": 91511,
        "bases_mapped_cigar": 319214949,
        "mismatches": 2399832,
        "error_rate": 0.007517918,
        "average_length": 142,
        "average_quality": 39.1,
        "insert_size_average": 208.9,
        "insert_size_std_dev": 86.5,
        "properly_paired_percent": 89.9,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.07,
        "mean_coverage_target": 3.48
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 177,
          "mean_insert_size": 184.93852
        },
        "panels": {}
      }
    },
    "filler-D0000114": {
      "samtools": {
        "raw_total_sequences": 1946905,
        "reads_mapped": 1946905,
        "reads_unmapped": 0,
        "reads_properly_paired": 1750262,
        "reads_duplicated": 0,
        "reads_mq0": 78143,
        "bases_mapped_cigar": 274480021,
        "mismatches": 2128765,
        "error_rate": 0.007755628,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 204.4,
        "insert_size_std_dev": 86.2,
        "properly_paired_percent": 89.9,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.06,
        "mean_coverage_target": 2.97
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 176,
          "mean_insert_size": 184.235411
        },
        "panels": {}
      }
    },
    "filler-D0001376": {
      "samtools": {
        "raw_total_sequences": 1436730,
        "reads_mapped": 1436730,
        "reads_unmapped": 0,
        "reads_properly_paired": 1278544,
        "reads_duplicated": 0,
        "reads_mq0": 60967,
        "bases_mapped_cigar": 200403140,
        "mismatches": 1585181,
        "error_rate": 0.007909961,
        "average_length": 140,
        "average_quality": 39.1,
        "insert_size_average": 197.2,
        "insert_size_std_dev": 82.2,
        "properly_paired_percent": 89.0,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.04,
        "mean_coverage_target": 2.17
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 174,
          "mean_insert_size": 183.876156
        },
        "panels": {}
      }
    },
    "T18-D0003137": {
      "samtools": {
        "raw_total_sequences": 1688484,
        "reads_mapped": 1688484,
        "reads_unmapped": 0,
        "reads_properly_paired": 1639658,
        "reads_duplicated": 0,
        "reads_mq0": 66621,
        "bases_mapped_cigar": 236186686,
        "mismatches": 1897143,
        "error_rate": 0.008032387,
        "average_length": 140,
        "average_quality": 39.1,
        "insert_size_average": 216.2,
        "insert_size_std_dev": 101.5,
        "properly_paired_percent": 97.1,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.05,
        "mean_coverage_target": 2.6
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 179,
          "mean_insert_size": 199.903999
        },
        "panels": {}
      }
    },
    "filler-D0000644": {
      "samtools": {
        "raw_total_sequences": 1974554,
        "reads_mapped": 1974554,
        "reads_unmapped": 0,
        "reads_properly_paired": 1753416,
        "reads_duplicated": 0,
        "reads_mq0": 81483,
        "bases_mapped_cigar": 277935885,
        "mismatches": 2137359,
        "error_rate": 0.007690116,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 205.3,
        "insert_size_std_dev": 86.3,
        "properly_paired_percent": 88.8,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.06,
        "mean_coverage_target": 3.03
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 178,
          "mean_insert_size": 185.052733
        },
        "panels": {}
      }
    },
    "filler-D0001776": {
      "samtools": {
        "raw_total_sequences": 1752027,
        "reads_mapped": 1752027,
        "reads_unmapped": 0,
        "reads_properly_paired": 1618626,
        "reads_duplicated": 0,
        "reads_mq0": 72986,
        "bases_mapped_cigar": 245737047,
        "mismatches": 1897322,
        "error_rate": 0.007720944,
        "average_length": 140,
        "average_quality": 39.1,
        "insert_size_average": 208.9,
        "insert_size_std_dev": 94.1,
        "properly_paired_percent": 92.4,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.05,
        "mean_coverage_target": 2.68
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 178,
          "mean_insert_size": 190.96912
        },
        "panels": {}
      }
    },
    "filler-D0002607": {
      "samtools": {
        "raw_total_sequences": 1826736,
        "reads_mapped": 1826736,
        "reads_unmapped": 0,
        "reads_properly_paired": 1745603,
        "reads_duplicated": 0,
        "reads_mq0": 72395,
        "bases_mapped_cigar": 256041678,
        "mismatches": 2014912,
        "error_rate": 0.007869469,
        "average_length": 140,
        "average_quality": 39.1,
        "insert_size_average": 212.3,
        "insert_size_std_dev": 93.9,
        "properly_paired_percent": 95.6,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.06,
        "mean_coverage_target": 2.81
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 180,
          "mean_insert_size": 197.263763
        },
        "panels": {}
      }
    },
    "filler-D0000548": {
      "samtools": {
        "raw_total_sequences": 1812018,
        "reads_mapped": 1812018,
        "reads_unmapped": 0,
        "reads_properly_paired": 1765784,
        "reads_duplicated": 0,
        "reads_mq0": 72741,
        "bases_mapped_cigar": 255814862,
        "mismatches": 1978653,
        "error_rate": 0.007734707,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 219.6,
        "insert_size_std_dev": 100.8,
        "properly_paired_percent": 97.4,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.06,
        "mean_coverage_target": 2.79
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 180,
          "mean_insert_size": 201.286912
        },
        "panels": {}
      }
    },
    "filler-D0001310": {
      "samtools": {
        "raw_total_sequences": 2386671,
        "reads_mapped": 2386671,
        "reads_unmapped": 0,
        "reads_properly_paired": 2153549,
        "reads_duplicated": 0,
        "reads_mq0": 101362,
        "bases_mapped_cigar": 337520097,
        "mismatches": 2548773,
        "error_rate": 0.00755147,
        "average_length": 142,
        "average_quality": 39.1,
        "insert_size_average": 205.6,
        "insert_size_std_dev": 85.1,
        "properly_paired_percent": 90.2,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.07,
        "mean_coverage_target": 3.68
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 176,
          "mean_insert_size": 185.820241
        },
        "panels": {}
      }
    },
    "filler-D0000822": {
      "samtools": {
        "raw_total_sequences": 2321431,
        "reads_mapped": 2321431,
        "reads_unmapped": 0,
        "reads_properly_paired": 2018884,
        "reads_duplicated": 0,
        "reads_mq0": 98143,
        "bases_mapped_cigar": 327843427,
        "mismatches": 2514587,
        "error_rate": 0.007670085,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 203.0,
        "insert_size_std_dev": 84.6,
        "properly_paired_percent": 87.0,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.07,
        "mean_coverage_target": 3.55
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 176,
          "mean_insert_size": 181.096849
        },
        "panels": {}
      }
    },
    "filler-D0001324": {
      "samtools": {
        "raw_total_sequences": 2087819,
        "reads_mapped": 2087819,
        "reads_unmapped": 0,
        "reads_properly_paired": 1871058,
        "reads_duplicated": 0,
        "reads_mq0": 86317,
        "bases_mapped_cigar": 294136413,
        "mismatches": 2249904,
        "error_rate": 0.007649186,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 205.5,
        "insert_size_std_dev": 86.9,
        "properly_paired_percent": 89.6,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.06,
        "mean_coverage_target": 3.2
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 177,
          "mean_insert_size": 184.807438
        },
        "panels": {}
      }
    },
    "filler-D0002199": {
      "samtools": {
        "raw_total_sequences": 2547523,
        "reads_mapped": 2547523,
        "reads_unmapped": 0,
        "reads_properly_paired": 2207845,
        "reads_duplicated": 0,
        "reads_mq0": 107075,
        "bases_mapped_cigar": 357685889,
        "mismatches": 2760093,
        "error_rate": 0.007716528,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 195.9,
        "insert_size_std_dev": 78.8,
        "properly_paired_percent": 86.7,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.08,
        "mean_coverage_target": 3.87
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 174,
          "mean_insert_size": 177.498421
        },
        "panels": {}
      }
    },
    "filler-D0002463": {
      "samtools": {
        "raw_total_sequences": 2298725,
        "reads_mapped": 2298725,
        "reads_unmapped": 0,
        "reads_properly_paired": 1987647,
        "reads_duplicated": 0,
        "reads_mq0": 93284,
        "bases_mapped_cigar": 323527404,
        "mismatches": 2524888,
        "error_rate": 0.007804248,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 197.1,
        "insert_size_std_dev": 82.0,
        "properly_paired_percent": 86.5,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.07,
        "mean_coverage_target": 3.48
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 173,
          "mean_insert_size": 176.179296
        },
        "panels": {}
      }
    },
    "filler-D0002735": {
      "samtools": {
        "raw_total_sequences": 2956097,
        "reads_mapped": 2956097,
        "reads_unmapped": 0,
        "reads_properly_paired": 2911788,
        "reads_duplicated": 0,
        "reads_mq0": 114825,
        "bases_mapped_cigar": 421029958,
        "mismatches": 3167869,
        "error_rate": 0.007524094,
        "average_length": 143,
        "average_quality": 39.1,
        "insert_size_average": 222.2,
        "insert_size_std_dev": 92.7,
        "properly_paired_percent": 98.5,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.1,
        "mean_coverage_target": 4.65
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 183,
          "mean_insert_size": 203.208523
        },
        "panels": {}
      }
    },
    "filler-D0002606": {
      "samtools": {
        "raw_total_sequences": 2041472,
        "reads_mapped": 2041472,
        "reads_unmapped": 0,
        "reads_properly_paired": 1845016,
        "reads_duplicated": 0,
        "reads_mq0": 81826,
        "bases_mapped_cigar": 288071868,
        "mismatches": 2242238,
        "error_rate": 0.007783606,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 206.1,
        "insert_size_std_dev": 85.3,
        "properly_paired_percent": 90.4,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.06,
        "mean_coverage_target": 3.13
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 178,
          "mean_insert_size": 188.947078
        },
        "panels": {}
      }
    },
    "filler-D0002686": {
      "samtools": {
        "raw_total_sequences": 1812548,
        "reads_mapped": 1812548,
        "reads_unmapped": 0,
        "reads_properly_paired": 1567958,
        "reads_duplicated": 0,
        "reads_mq0": 76705,
        "bases_mapped_cigar": 254128388,
        "mismatches": 2011252,
        "error_rate": 0.007914315,
        "average_length": 140,
        "average_quality": 39.1,
        "insert_size_average": 199.0,
        "insert_size_std_dev": 82.4,
        "properly_paired_percent": 86.5,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.06,
        "mean_coverage_target": 2.75
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 176,
          "mean_insert_size": 180.898878
        },
        "panels": {}
      }
    },
    "T21-D0002837": {
      "samtools": {
        "raw_total_sequences": 2379208,
        "reads_mapped": 2379208,
        "reads_unmapped": 0,
        "reads_properly_paired": 2294185,
        "reads_duplicated": 0,
        "reads_mq0": 94889,
        "bases_mapped_cigar": 335408246,
        "mismatches": 2596122,
        "error_rate": 0.007740185,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 216.9,
        "insert_size_std_dev": 97.7,
        "properly_paired_percent": 96.4,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.08,
        "mean_coverage_target": 3.67
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 180,
          "mean_insert_size": 199.210758
        },
        "panels": {}
      }
    },
    "T18-D0003095": {
      "samtools": {
        "raw_total_sequences": 2513667,
        "reads_mapped": 2513667,
        "reads_unmapped": 0,
        "reads_properly_paired": 2220731,
        "reads_duplicated": 0,
        "reads_mq0": 105000,
        "bases_mapped_cigar": 354941249,
        "mismatches": 2732599,
        "error_rate": 0.007698736,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 203.6,
        "insert_size_std_dev": 86.1,
        "properly_paired_percent": 88.3,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.08,
        "mean_coverage_target": 3.87
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 175,
          "mean_insert_size": 183.3973
        },
        "panels": {}
      }
    },
    "filler-D0000329": {
      "samtools": {
        "raw_total_sequences": 1945069,
        "reads_mapped": 1945069,
        "reads_unmapped": 0,
        "reads_properly_paired": 1764178,
        "reads_duplicated": 0,
        "reads_mq0": 77338,
        "bases_mapped_cigar": 274315038,
        "mismatches": 2136289,
        "error_rate": 0.007787721,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 202.6,
        "insert_size_std_dev": 81.9,
        "properly_paired_percent": 90.7,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.06,
        "mean_coverage_target": 2.97
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 176,
          "mean_insert_size": 187.856711
        },
        "panels": {}
      }
    },
    "filler-D0001021": {
      "samtools": {
        "raw_total_sequences": 1931695,
        "reads_mapped": 1931695,
        "reads_unmapped": 0,
        "reads_properly_paired": 1779211,
        "reads_duplicated": 0,
        "reads_mq0": 76060,
        "bases_mapped_cigar": 272745451,
        "mismatches": 2119599,
        "error_rate": 0.007771345,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 207.3,
        "insert_size_std_dev": 85.8,
        "properly_paired_percent": 92.1,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.06,
        "mean_coverage_target": 2.98
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 177,
          "mean_insert_size": 189.6964
        },
        "panels": {}
      }
    },
    "T21-D0002994": {
      "samtools": {
        "raw_total_sequences": 2267132,
        "reads_mapped": 2267132,
        "reads_unmapped": 0,
        "reads_properly_paired": 1991636,
        "reads_duplicated": 0,
        "reads_mq0": 96900,
        "bases_mapped_cigar": 317622906,
        "mismatches": 2517868,
        "error_rate": 0.007927224,
        "average_length": 140,
        "average_quality": 39.1,
        "insert_size_average": 194.8,
        "insert_size_std_dev": 78.6,
        "properly_paired_percent": 87.8,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.07,
        "mean_coverage_target": 3.44
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 173,
          "mean_insert_size": 179.068096
        },
        "panels": {}
      }
    },
    "filler-D0002285": {
      "samtools": {
        "raw_total_sequences": 1326372,
        "reads_mapped": 1326372,
        "reads_unmapped": 0,
        "reads_properly_paired": 1278178,
        "reads_duplicated": 0,
        "reads_mq0": 52414,
        "bases_mapped_cigar": 186633280,
        "mismatches": 1444663,
        "error_rate": 0.00774065,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 215.4,
        "insert_size_std_dev": 97.1,
        "properly_paired_percent": 96.4,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.04,
        "mean_coverage_target": 2.04
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 180,
          "mean_insert_size": 199.483346
        },
        "panels": {}
      }
    },
    "filler-D0000192": {
      "samtools": {
        "raw_total_sequences": 2479279,
        "reads_mapped": 2479279,
        "reads_unmapped": 0,
        "reads_properly_paired": 2126855,
        "reads_duplicated": 0,
        "reads_mq0": 105456,
        "bases_mapped_cigar": 349098078,
        "mismatches": 2686679,
        "error_rate": 0.007696058,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 194.9,
        "insert_size_std_dev": 77.3,
        "properly_paired_percent": 85.8,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.07,
        "mean_coverage_target": 3.77
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 173,
          "mean_insert_size": 174.509586
        },
        "panels": {}
      }
    },
    "T21-D0003169": {
      "samtools": {
        "raw_total_sequences": 3705822,
        "reads_mapped": 3705822,
        "reads_unmapped": 0,
        "reads_properly_paired": 3488582,
        "reads_duplicated": 0,
        "reads_mq0": 158096,
        "bases_mapped_cigar": 522704249,
        "mismatches": 4136793,
        "error_rate": 0.007914213,
        "average_length": 141,
        "average_quality": 39.1,
        "insert_size_average": 212.2,
        "insert_size_std_dev": 93.5,
        "properly_paired_percent": 94.1,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.12,
        "mean_coverage_target": 5.7
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 178,
          "mean_insert_size": 192.82268
        },
        "panels": {}
      }
    },
    "T13-D0003573": {
      "samtools": {
        "raw_total_sequences": 3483972,
        "reads_mapped": 3483972,
        "reads_unmapped": 0,
        "reads_properly_paired": 3020999,
        "reads_duplicated": 0,
        "reads_mq0": 156166,
        "bases_mapped_cigar": 488266179,
        "mismatches": 3863329,
        "error_rate": 0.007912342,
        "average_length": 140,
        "average_quality": 39.1,
        "insert_size_average": 184.8,
        "insert_size_std_dev": 66.4,
        "properly_paired_percent": 86.7,
        "duplication_rate": 0.0,
        "mapping_rate": 1.0
      },
      "mosdepth": {
        "mean_coverage": 0.1,
        "mean_coverage_target": 5.26
      },
      "picard": {
        "insert_size": {
          "median_insert_size": 169,
          "mean_insert_size": 167.955064
        },
        "panels": {}
      }
    }
  }
}