20250818_LH00166_0162_A233WJNLT3 DAQ-UMI Report

Report summarizing key metrics from DAQ-UMI pipeline

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Report generated on 2026-03-27, 14:33 UTC based on data in: /tmp/nxf.J9peykfQ0f

General Statistics

Note: Fastp columns represent a single lane; umi-tools columns derived from chr1 only

Showing ³²/₃₂ rows and ¹⁹/₃₀ columns.

Sample Name	Mean Cov.	Min Cov.	Max Cov.	Mb Total Coverage Bases	Genome length	Fold Enrichment	Median Target Coverage	Target Bases ≥ 30X	Insert Size	Mean Insert Size	Error rate	Non-primary	Reads mapped	% Mapped	% Proper pairs	% MapQ 0 reads	Total seqs	Mean insert	% Dups	M Unique Reads	% Pass Dedup	% Duplication	% > Q30	Mb Q30 bases	Reads After Filtering	GC content	% PF	% Adapter	Mean R1 Length	Mean R2 Length
LOW_FF-D0001384																						0.3%	95.3%	127.7Mb	0.9M	50.0%	99.1%	8.2%	150.0bp	150.0bp
NTC-D0002235	3.2X	0.0X	101.0X	110.1Mb	34156490	51X	3.0X	0%	172bp	179bp	0.78%	0.0M	2.1M	100.0%	86.1%	4.2%	2.1M	197.1bp	3%	0.1M	97.1%	0.3%	95.3%	36.7Mb	0.3M	50.2%	99.0%	11.7%	150.0bp	150.0bp
T13-D0003273	3.5X	0.0X	124.0X	118.7Mb	34156490	50X	3.0X	0%	174bp	185bp	0.75%	0.0M	2.2M	100.0%	89.9%	4.1%	2.2M	208.9bp	3%	0.1M	96.6%	0.6%	95.4%	40.4Mb	0.3M	50.2%	99.0%	6.7%	150.0bp	150.0bp
T13-D0003573	5.3X	0.0X	411.0X	179.8Mb	34156490	52X	5.0X	0%	168bp	168bp	0.79%	0.0M	3.5M	100.0%	86.7%	4.5%	3.5M	184.8bp	3%	0.2M	97.2%	0.5%	96.2%	62.6Mb	0.5M	52.1%	99.2%	12.9%	150.0bp	150.0bp
T18-D0003095	3.9X	0.0X	120.0X	132.1Mb	34156490	51X	3.0X	0%	173bp	183bp	0.77%	0.0M	2.5M	100.0%	88.3%	4.2%	2.5M	203.6bp	3%	0.1M	96.8%	0.4%	95.7%	44.6Mb	0.3M	51.4%	99.0%	10.3%	150.0bp	150.0bp
T18-D0003137	2.6X	0.0X	103.0X	88.7Mb	34156490	50X	2.0X	0%	177bp	200bp	0.80%	0.0M	1.7M	100.0%	97.1%	3.9%	1.7M	216.2bp	4%	0.1M	96.4%	0.5%	95.5%	29.9Mb	0.2M	50.7%	99.0%	12.1%	150.0bp	150.0bp
T21-D0002837	3.7X	0.0X	112.0X	125.5Mb	34156490	50X	3.0X	0%	178bp	199bp	0.77%	0.0M	2.4M	100.0%	96.4%	4.0%	2.4M	216.9bp	4%	0.1M	96.0%	0.6%	95.4%	41.8Mb	0.3M	50.1%	98.7%	9.7%	150.0bp	150.0bp
T21-D0002994	3.4X	0.0X	177.0X	117.3Mb	34156490	52X	3.0X	0%	171bp	179bp	0.79%	0.0M	2.3M	100.0%	87.8%	4.3%	2.3M	194.8bp	3%	0.1M	97.2%	0.4%	95.3%	38.3Mb	0.3M	50.9%	99.1%	13.5%	150.0bp	150.0bp
T21-D0003169	5.7X	0.0X	320.0X	194.7Mb	34156490	50X	5.0X	0%	176bp	193bp	0.79%	0.0M	3.7M	100.0%	94.1%	4.3%	3.7M	212.2bp	4%	0.2M	96.2%	0.6%	94.9%	64.1Mb	0.5M	50.2%	98.8%	9.7%	150.0bp	150.0bp
filler-D0000114	3.0X	0.0X	71.0X	101.5Mb	34156490	51X	3.0X	0%	173bp	184bp	0.78%	0.0M	1.9M	100.0%	89.9%	4.0%	1.9M	204.4bp	4%	0.1M	96.4%	0.7%	96.0%	35.3Mb	0.3M	50.0%	99.0%	9.7%	150.0bp	150.0bp
filler-D0000192	3.8X	0.0X	187.0X	128.7Mb	34156490	52X	3.0X	0%	171bp	175bp	0.77%	0.0M	2.5M	100.0%	85.8%	4.3%	2.5M	194.9bp	3%	0.1M	97.0%	0.3%	95.4%	42.4Mb	0.3M	50.9%	99.1%	11.1%	150.0bp	150.0bp
filler-D0000329	3.0X	0.0X	78.0X	101.5Mb	34156490	51X	3.0X	0%	174bp	188bp	0.78%	0.0M	1.9M	100.0%	90.7%	4.0%	1.9M	202.6bp	3%	0.1M	97.0%	0.3%	95.1%	33.0Mb	0.2M	49.6%	98.9%	11.0%	150.0bp	150.0bp
filler-D0000548	2.8X	0.0X	116.0X	95.3Mb	34156490	50X	2.0X	0%	178bp	201bp	0.77%	0.0M	1.8M	100.0%	97.4%	4.0%	1.8M	219.6bp	4%	0.1M	96.0%	0.6%	95.5%	32.0Mb	0.2M	49.7%	98.7%	9.3%	150.0bp	150.0bp
filler-D0000555	1.9X	0.0X	59.0X	66.6Mb	34156490	50X	2.0X	0%	175bp	191bp	0.77%	0.0M	1.3M	100.0%	93.6%	4.1%	1.3M	211.6bp	4%	0.1M	96.3%	0.4%	95.2%	21.8Mb	0.2M	49.9%	98.8%	10.6%	150.0bp	150.0bp
filler-D0000644	3.0X	0.0X	91.0X	103.3Mb	34156490	51X	3.0X	0%	175bp	185bp	0.77%	0.0M	2.0M	100.0%	88.8%	4.1%	2.0M	205.3bp	4%	0.1M	96.5%	0.3%	95.0%	34.2Mb	0.3M	50.3%	98.8%	9.8%	150.0bp	150.0bp
filler-D0000668	2.2X	0.0X	98.0X	75.8Mb	34156490	51X	2.0X	0%	175bp	193bp	0.81%	0.0M	1.5M	100.0%	94.0%	4.1%	1.5M	208.6bp	3%	0.1M	96.8%	0.5%	95.8%	26.8Mb	0.2M	50.2%	98.9%	14.1%	150.0bp	150.0bp
filler-D0000674	2.6X	0.0X	90.0X	88.4Mb	34156490	50X	2.0X	0%	179bp	203bp	0.77%	0.0M	1.7M	100.0%	98.1%	4.0%	1.7M	217.4bp	4%	0.1M	96.3%	0.3%	94.8%	29.0Mb	0.2M	49.6%	98.8%	9.5%	150.0bp	150.0bp
filler-D0000822	3.5X	0.0X	193.0X	121.4Mb	34156490	51X	3.0X	0%	173bp	181bp	0.77%	0.0M	2.3M	100.0%	87.0%	4.2%	2.3M	203.0bp	3%	0.1M	97.0%	0.4%	95.7%	40.9Mb	0.3M	50.3%	99.2%	9.6%	150.0bp	150.0bp
filler-D0001021	3.0X	0.0X	100.0X	101.7Mb	34156490	51X	3.0X	0%	175bp	190bp	0.78%	0.0M	1.9M	100.0%	92.1%	3.9%	1.9M	207.3bp	3%	0.1M	97.0%	0.4%	94.8%	32.5Mb	0.2M	50.0%	98.9%	9.7%	150.0bp	150.0bp
filler-D0001217																						0.0%	0.0%	0.0Mb	0.0M	0.0%			0.0bp	0.0bp
filler-D0001310	3.7X	0.0X	197.0X	125.7Mb	34156490	51X	3.0X	0%	174bp	186bp	0.76%	0.0M	2.4M	100.0%	90.2%	4.2%	2.4M	205.6bp	4%	0.1M	96.3%	0.7%	96.1%	44.0Mb	0.3M	50.4%	99.1%	8.5%	150.0bp	150.0bp
filler-D0001324	3.2X	0.0X	111.0X	109.3Mb	34156490	51X	3.0X	0%	174bp	185bp	0.76%	0.0M	2.1M	100.0%	89.6%	4.1%	2.1M	205.5bp	4%	0.1M	96.3%	0.3%	95.4%	36.1Mb	0.3M	50.2%	99.0%	9.9%	150.0bp	150.0bp
filler-D0001376	2.2X	0.0X	102.0X	74.2Mb	34156490	51X	2.0X	0%	173bp	184bp	0.79%	0.0M	1.4M	100.0%	89.0%	4.2%	1.4M	197.2bp	3%	0.1M	97.0%	0.4%	95.6%	24.9Mb	0.2M	50.6%	98.8%	14.6%	150.0bp	150.0bp
filler-D0001664																						0.0%	0.0%	0.0Mb	0.0M	0.0%			0.0bp	0.0bp
filler-D0001776	2.7X	0.0X	41.0X	91.4Mb	34156490	50X	2.0X	0%	175bp	191bp	0.77%	0.0M	1.8M	100.0%	92.4%	4.2%	1.8M	208.9bp	4%	0.1M	96.2%	0.7%	95.9%	32.4Mb	0.2M	50.3%	98.9%	11.3%	150.0bp	150.0bp
filler-D0002199	3.9X	0.0X	82.0X	132.2Mb	34156490	52X	3.0X	0%	172bp	177bp	0.77%	0.0M	2.5M	100.0%	86.7%	4.2%	2.5M	195.9bp	3%	0.1M	96.9%	0.4%	95.8%	45.2Mb	0.3M	50.9%	99.1%	11.8%	150.0bp	150.0bp
filler-D0002285	2.0X	0.0X	86.0X	69.7Mb	34156490	50X	2.0X	0%	178bp	199bp	0.77%	0.0M	1.3M	100.0%	96.4%	4.0%	1.3M	215.4bp	4%	0.1M	96.4%	0.4%	95.2%	22.9Mb	0.2M	49.9%	98.9%	10.6%	150.0bp	150.0bp
filler-D0002463	3.5X	0.0X	136.0X	118.7Mb	34156490	52X	3.0X	0%	171bp	176bp	0.78%	0.0M	2.3M	100.0%	86.5%	4.1%	2.3M	197.1bp	3%	0.1M	97.1%	0.6%	95.5%	41.0Mb	0.3M	50.3%	99.1%	11.4%	150.0bp	150.0bp
filler-D0002606	3.1X	0.0X	89.0X	106.9Mb	34156490	51X	3.0X	0%	176bp	189bp	0.78%	0.0M	2.0M	100.0%	90.4%	4.0%	2.0M	206.1bp	4%	0.1M	96.3%	0.7%	95.4%	36.7Mb	0.3M	49.7%	98.9%	9.3%	150.0bp	150.0bp
filler-D0002607	2.8X	0.0X	159.0X	96.1Mb	34156490	50X	2.0X	0%	178bp	197bp	0.79%	0.0M	1.8M	100.0%	95.6%	4.0%	1.8M	212.3bp	4%	0.1M	96.3%	0.9%	96.0%	33.6Mb	0.2M	50.2%	99.0%	10.6%	150.0bp	150.0bp
filler-D0002686	2.8X	0.0X	94.0X	93.8Mb	34156490	51X	2.0X	0%	173bp	181bp	0.79%	0.0M	1.8M	100.0%	86.5%	4.2%	1.8M	199.0bp	3%	0.1M	96.8%	0.6%	95.4%	32.7Mb	0.2M	50.0%	98.9%	11.9%	150.0bp	150.0bp
filler-D0002735	4.7X	0.0X	218.0X	159.0Mb	34156490	49X	4.0X	0%	180bp	203bp	0.75%	0.0M	3.0M	100.0%	98.5%	3.9%	3.0M	222.2bp	4%	0.2M	96.0%	1.1%	96.0%	56.1Mb	0.4M	50.0%	99.2%	4.9%	150.0bp	150.0bp

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: general_stats_table_table

Sort	Group	Column	Description	ID	Scale
\|\|	Mosdepth	Mean Cov.	Mean coverage	`mosdepth-mean_coverage`
\|\|	Mosdepth	Min Cov.	Minimum coverage	`mosdepth-min_coverage`
\|\|	Mosdepth	Max Cov.	Maximum coverage	`mosdepth-max_coverage`
\|\|	Mosdepth	Mb Total Coverage Bases	Total coverage of bases (millions)	`mosdepth-coverage_bases`	base_count
\|\|	Mosdepth	Genome length	Total length of the genome	`mosdepth-length`
\|\|	Picard: HsMetrics	Fold Enrichment	Fold Enrichment	`picard_hsmetrics-FOLD_ENRICHMENT`
\|\|	Picard: HsMetrics	Median Target Coverage	The median coverage of reads that mapped to target regions of an experiment.	`picard_hsmetrics-MEDIAN_TARGET_COVERAGE`
\|\|	Picard: HsMetrics	Target Bases ≥ 30X	Percent of target bases with coverage ≥ 30X	`picard_hsmetrics-picard_target_bases_30X`
\|\|	Picard: InsertSizeMetrics	Insert Size	Median Insert Size, all read orientations (bp)	`picard_insertsizemetrics-summed_median`
\|\|	Picard: InsertSizeMetrics	Mean Insert Size	Mean Insert Size, all read orientations (bp)	`picard_insertsizemetrics-summed_mean`
\|\|	Samtools: stats	Error rate	Error rate: mismatches (NM) / bases mapped (CIGAR)	`samtools_stats-error_rate`
\|\|	Samtools: stats	Non-primary	Non-primary alignments (millions)	`samtools_stats-non_primary_alignments`	read_count
\|\|	Samtools: stats	Reads mapped	Reads mapped in the bam file (millions)	`samtools_stats-reads_mapped`	read_count
\|\|	Samtools: stats	% Mapped	% Mapped reads	`samtools_stats-reads_mapped_percent`
\|\|	Samtools: stats	% Proper pairs	% Properly paired reads	`samtools_stats-reads_properly_paired_percent`
\|\|	Samtools: stats	% MapQ 0 reads	% of reads that are ambiguously placed (MapQ=0)	`samtools_stats-reads_MQ0_percent`
\|\|	Samtools: stats	Total seqs	Total sequences in the bam file (millions)	`samtools_stats-raw_total_sequences`	read_count
\|\|	Samtools: stats	Mean insert	Average insert size	`samtools_stats-insert_size_average`
\|\|	Sambamba: markdup	% Dups	Rate of Duplication per Sample	`sambamba_markdup-duplicate_rate`
\|\|	UMI-tools	M Unique Reads	Reads remaining after deduplication (millions)	`umi_tools-dedup_output_reads`	read_count
\|\|	UMI-tools	% Pass Dedup	% processed reads that passed deduplication	`umi_tools-dedup_percent_passing`
\|\|	fastp	% Duplication	Duplication rate before filtering	`fastp-pct_duplication`
\|\|	fastp	% > Q30	Percentage of reads > Q30 after filtering	`fastp-after_filtering_q30_rate`
\|\|	fastp	Mb Q30 bases	Bases > Q30 after filtering (millions)	`fastp-after_filtering_q30_bases`	base_count
\|\|	fastp	Reads After Filtering	Total reads after filtering (millions)	`fastp-filtering_result_passed_filter_reads`	read_count
\|\|	fastp	GC content	GC content after filtering	`fastp-after_filtering_gc_content`
\|\|	fastp	% PF	Percent reads passing filter	`fastp-pct_surviving`
\|\|	fastp	% Adapter	Percentage adapter-trimmed reads	`fastp-pct_adapter`
\|\|	fastp	Mean R1 Length	Mean read length of R1	`fastp-before_filtering_read1_mean_length`
\|\|	fastp	Mean R2 Length	Mean read length of R2	`fastp-before_filtering_read2_mean_length`

Seqtool

Seqtool performs qc analyses on sequencing alignments.

Basic Stats

Full summary statistics from seqtool output.

Showing ²⁹/₂₉ rows and ⁷⁰/₇₀ columns.

Sample Name	reads	unique_reads	pairs	proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frac_proper_pairs	frag_size_q20	frag_size_median	frag_size_q80	frag_size_mean	frag_size_std	n_q20	n_q25	n_q30	n_bases	mean_depth	cv_depth	max_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	gc_0.0	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_1.0	bed	saturation_at_1000000_reads	roi_size	n_sites	loglik	lrt	bed_base_count
NTC-D0002235_full_basic_stats	2126101.0	2126101.0	1065662.0	914818.0	843933.0	70885.0	1847344.0	278757.0	0.9	0.1	0.9	0.1	0.9	153.0	171.0	188.0	171.6	22.7	1.0	1.0	1.0	299058576.0	3.1	0.5	101.0	0.0	3.0	7.0	9.0	1.0	1.0	1622.0	22.0	0.1	0.3	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.6	0.1	IDT.Exomev2.targets.hg38.bed	26052.0	33951579.0	42.0	-0.2	-0.0	34156137.0
T13-D0003273_full_basic_stats	2248634.0	2248634.0	1127682.0	1011165.0	933437.0	77728.0	1930186.0	318448.0	0.9	0.1	0.9	0.1	0.9	161.0	175.0	199.0	188.2	34.8	1.0	1.0	1.0	319562995.0	3.3	0.5	120.0	0.0	3.0	7.0	10.0	1.0	1.0	2665.0	217.0	0.1	0.4	0.4	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	1.0	1.0	0.8	0.6	0.7	0.4	IDT.Exomev2.targets.hg38.bed	27810.0	33951579.0	51.0	-0.2	-0.0	34156137.0
T13-D0003573_full_basic_stats	3483972.0	3483972.0	1746128.0	1510499.0	1397880.0	112619.0	3087590.0	396382.0	0.9	0.1	0.9	0.1	0.9	150.0	167.0	180.0	164.5	18.2	1.0	1.0	1.0	488788190.0	5.1	0.4	399.0	1.0	5.0	10.0	14.0	1.0	1.0	11776.0	935.0	0.1	0.3	0.3	0.5	0.7	0.7	0.8	0.9	0.9	1.0	1.1	1.1	1.1	1.1	1.1	0.9	0.7	0.6	0.3	IDT.Exomev2.targets.hg38.bed	45574.0	33951579.0	362.0	-1.6	-0.0	34156137.0
T18-D0003095_full_basic_stats	2513667.0	2513667.0	1260283.0	1110366.0	1025705.0	84661.0	2173246.0	340421.0	0.9	0.1	0.9	0.1	0.9	155.0	172.0	192.0	179.8	29.5	1.0	1.0	1.0	355343700.0	3.7	0.5	117.0	0.0	3.0	8.0	10.0	1.0	1.0	2774.0	113.0	0.1	0.2	0.2	0.5	0.7	0.7	0.8	0.9	0.9	1.0	1.1	1.1	1.1	1.1	1.1	0.9	0.8	0.4	0.3	IDT.Exomev2.targets.hg38.bed	31646.0	33951579.0	90.0	-0.4	-0.0	34156137.0
T18-D0003137_full_basic_stats	1688484.0	1688484.0	846916.0	819829.0	757032.0	62797.0	1428606.0	259878.0	0.8	0.2	0.9	0.1	1.0	157.0	178.0	290.0	210.7	68.7	1.0	1.0	1.0	236491899.0	2.4	0.5	95.0	0.0	2.0	6.0	8.0	1.0	1.0	1672.0	0.0	0.1	0.4	0.4	0.5	0.7	0.7	0.9	1.0	1.0	1.0	1.1	1.0	1.1	1.0	1.0	0.8	0.6	0.4	0.0	IDT.Exomev2.targets.hg38.bed	21167.0	33951579.0	26.0	-0.1	-0.0	34156137.0
T21-D0002837_full_basic_stats	2379208.0	2379208.0	1193796.0	1147092.0	1059254.0	87838.0	2014305.0	364903.0	0.8	0.2	0.9	0.1	1.0	160.0	179.0	270.0	209.5	62.9	1.0	1.0	1.0	335806849.0	3.4	0.5	108.0	0.0	3.0	7.0	10.0	1.0	1.0	3390.0	121.0	0.1	0.3	0.4	0.5	0.6	0.7	0.9	1.0	1.0	1.0	1.1	1.0	1.0	1.0	1.0	0.8	0.6	0.5	0.5	IDT.Exomev2.targets.hg38.bed	29058.0	33951579.0	113.0	-0.5	-0.0	34156137.0
T21-D0002994_full_basic_stats	2267132.0	2267132.0	1136725.0	995818.0	919841.0	75977.0	1976535.0	290597.0	0.9	0.1	0.9	0.1	0.9	150.0	170.0	188.0	171.9	25.5	1.0	1.0	1.0	317981003.0	3.3	0.5	172.0	0.0	3.0	7.0	9.0	1.0	1.0	3818.0	622.0	0.1	0.2	0.4	0.6	0.8	0.8	0.9	0.9	1.0	1.0	1.1	1.0	1.0	1.0	1.0	0.9	0.7	0.6	0.3	IDT.Exomev2.targets.hg38.bed	28356.0	33951579.0	41.0	-0.2	-0.0	34156137.0
T21-D0003169_full_basic_stats	3705822.0	3705822.0	1858707.0	1744290.0	1606552.0	137738.0	3153009.0	552813.0	0.9	0.1	0.9	0.1	0.9	159.0	177.0	218.0	198.7	50.3	1.0	1.0	1.0	523323741.0	5.4	0.4	312.0	1.0	5.0	11.0	14.0	1.0	1.0	10911.0	934.0	0.1	0.3	0.3	0.5	0.7	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	1.0	0.9	0.8	0.6	0.6	0.2	IDT.Exomev2.targets.hg38.bed	44418.0	33951579.0	640.0	-18.0	-0.0	34156137.0
filler-D0000114_full_basic_stats	1946905.0	1946905.0	976188.0	875131.0	808549.0	66582.0	1677374.0	269531.0	0.9	0.1	0.9	0.1	0.9	156.0	173.0	197.0	183.6	33.9	1.0	1.0	1.0	274800015.0	2.8	0.5	69.0	0.0	3.0	6.0	8.0	1.0	1.0	1857.0	0.0	0.1	0.4	0.2	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	1.0	0.9	0.8	0.6	0.5	1.0	IDT.Exomev2.targets.hg38.bed	23658.0	33951579.0	26.0	-0.1	-0.0	34156137.0
filler-D0000192_full_basic_stats	2479279.0	2479279.0	1242921.0	1063427.0	982325.0	81102.0	2167444.0	311835.0	0.9	0.1	0.9	0.1	0.9	153.0	170.0	185.0	169.3	19.7	1.0	1.0	1.0	349484883.0	3.6	0.5	186.0	0.0	3.0	8.0	10.0	1.0	1.0	3753.0	681.0	0.1	0.4	0.2	0.5	0.8	0.7	0.8	0.9	1.0	1.0	1.1	1.1	1.1	1.0	1.0	0.9	0.7	0.4	0.2	IDT.Exomev2.targets.hg38.bed	31035.0	33951579.0	71.0	-0.3	-0.0	34156137.0
filler-D0000329_full_basic_stats	1945069.0	1945069.0	974997.0	882089.0	814225.0	67864.0	1677176.0	267893.0	0.9	0.1	0.9	0.1	0.9	155.0	173.0	198.0	184.3	34.9	1.0	1.0	1.0	274619734.0	2.8	0.5	74.0	0.0	3.0	6.0	8.0	1.0	1.0	1426.0	0.0	0.1	0.4	0.3	0.5	0.7	0.7	0.9	1.0	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.2	0.4	IDT.Exomev2.targets.hg38.bed	23619.0	33951579.0	28.0	-0.1	-0.0	34156137.0
filler-D0000548_full_basic_stats	1812018.0	1812018.0	909246.0	882892.0	813842.0	69050.0	1525564.0	286454.0	0.8	0.2	0.9	0.1	1.0	160.0	180.0	300.0	215.3	70.1	1.0	1.0	1.0	256134314.0	2.6	0.5	108.0	0.0	2.0	6.0	8.0	1.0	1.0	1858.0	63.0	0.1	0.2	0.3	0.4	0.6	0.7	0.9	1.0	1.0	1.0	1.0	1.0	1.0	1.0	0.9	0.8	0.5	0.9	0.3	IDT.Exomev2.targets.hg38.bed	21659.0	33951579.0	29.0	-0.1	-0.0	34156137.0
filler-D0000555_full_basic_stats	1272423.0	1272423.0	638307.0	595268.0	549711.0	45557.0	1085378.0	187045.0	0.9	0.1	0.9	0.1	0.9	157.0	176.0	213.0	196.3	48.7	1.0	1.0	1.0	179564673.0	1.8	0.6	55.0	0.0	2.0	5.0	6.0	1.0	1.0	553.0	0.0	0.1	0.2	0.2	0.6	0.7	0.8	0.9	1.0	1.0	1.0	1.0	1.0	1.0	1.0	0.9	0.8	0.5	0.2	0.9	IDT.Exomev2.targets.hg38.bed	15104.0	33951579.0	5.0	-0.0	-0.0	34156137.0
filler-D0000644_full_basic_stats	1974554.0	1974554.0	989874.0	876708.0	808691.0	68017.0	1698715.0	275839.0	0.9	0.1	0.9	0.1	0.9	158.0	175.0	197.0	182.4	31.2	1.0	1.0	1.0	278263194.0	2.9	0.5	89.0	0.0	3.0	6.0	9.0	1.0	1.0	2238.0	0.0	0.1	0.3	0.2	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	1.0	0.9	0.8	0.6	0.2	0.3	IDT.Exomev2.targets.hg38.bed	24146.0	33951579.0	36.0	-0.2	-0.0	34156137.0
filler-D0000668_full_basic_stats	1465077.0	1465077.0	735012.0	688660.0	635695.0	52965.0	1249734.0	215343.0	0.9	0.1	0.9	0.1	0.9	151.0	175.0	216.0	193.8	51.2	1.0	1.0	1.0	204386045.0	2.1	0.6	94.0	0.0	2.0	5.0	7.0	1.0	1.0	1760.0	0.0	0.1	0.3	0.2	0.4	0.7	0.7	0.8	0.9	1.0	1.0	1.1	1.0	1.1	1.0	1.0	0.8	0.6	0.3	0.0	IDT.Exomev2.targets.hg38.bed	18101.0	33951579.0	7.0	-0.0	-0.0	34156137.0
filler-D0000674_full_basic_stats	1672692.0	1672692.0	838866.0	820524.0	757147.0	63377.0	1413307.0	259385.0	0.8	0.2	0.9	0.1	1.0	161.0	180.0	304.0	215.5	69.6	1.0	1.0	1.0	236057309.0	2.4	0.5	87.0	0.0	2.0	6.0	8.0	1.0	1.0	2586.0	0.0	0.1	0.3	0.4	0.4	0.6	0.7	0.9	1.0	1.0	1.0	1.0	1.0	1.0	1.0	1.0	0.8	0.5	0.3	0.3	IDT.Exomev2.targets.hg38.bed	20383.0	33951579.0	23.0	-0.1	-0.0	34156137.0
filler-D0000822_full_basic_stats	2321431.0	2321431.0	1164311.0	1009442.0	931790.0	77652.0	2005514.0	315917.0	0.9	0.1	0.9	0.1	0.9	156.0	172.0	191.0	177.3	25.8	1.0	1.0	1.0	328199445.0	3.4	0.5	190.0	0.0	3.0	7.0	10.0	1.0	1.0	4346.0	730.0	0.1	0.3	0.4	0.6	0.8	0.8	0.9	1.0	1.0	1.1	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.7	0.2	IDT.Exomev2.targets.hg38.bed	28682.0	33951579.0	56.0	-0.2	-0.0	34156137.0
filler-D0001021_full_basic_stats	1931695.0	1931695.0	968257.0	889605.0	821953.0	67652.0	1659254.0	272441.0	0.9	0.1	0.9	0.1	0.9	158.0	175.0	205.0	191.0	41.0	1.0	1.0	1.0	273046900.0	2.8	0.5	99.0	0.0	3.0	6.0	9.0	1.0	1.0	2028.0	0.0	0.1	0.2	0.2	0.5	0.7	0.7	0.8	0.9	1.0	1.0	1.1	1.0	1.1	1.0	1.0	0.8	0.5	0.6	0.0	IDT.Exomev2.targets.hg38.bed	23815.0	33951579.0	32.0	-0.1	-0.0	34156137.0
filler-D0001310_full_basic_stats	2386671.0	2386671.0	1196905.0	1076774.0	993936.0	82838.0	2056017.0	330654.0	0.9	0.1	0.9	0.1	0.9	158.0	174.0	198.0	185.8	34.8	1.0	1.0	1.0	337911622.0	3.5	0.5	191.0	0.0	3.0	7.0	10.0	1.0	1.0	6685.0	883.0	0.1	0.4	0.4	0.6	0.8	0.8	0.9	0.9	1.0	1.0	1.1	1.1	1.1	1.0	1.0	0.8	0.7	0.8	0.5	IDT.Exomev2.targets.hg38.bed	29728.0	33951579.0	82.0	-0.4	-0.0	34156137.0
filler-D0001324_full_basic_stats	2087819.0	2087819.0	1046955.0	935529.0	863541.0	71988.0	1796338.0	291481.0	0.9	0.1	0.9	0.1	0.9	157.0	174.0	197.0	184.0	33.5	1.0	1.0	1.0	294472617.0	3.0	0.5	108.0	0.0	3.0	7.0	9.0	1.0	1.0	2547.0	137.0	0.1	0.3	0.4	0.6	0.8	0.8	0.9	0.9	1.0	1.0	1.1	1.0	1.0	1.0	1.0	0.8	0.6	0.5	0.6	IDT.Exomev2.targets.hg38.bed	25673.0	33951579.0	46.0	-0.2	-0.0	34156137.0
filler-D0001376_full_basic_stats	1436730.0	1436730.0	720094.0	639272.0	590103.0	49169.0	1246286.0	190444.0	0.9	0.1	0.9	0.1	0.9	149.0	171.0	193.0	175.5	30.3	1.0	1.0	1.0	200639815.0	2.1	0.6	97.0	0.0	2.0	5.0	7.0	1.0	1.0	1637.0	0.0	0.1	0.2	0.3	0.5	0.7	0.7	0.8	0.9	1.0	1.0	1.1	1.1	1.1	1.0	1.0	0.9	0.7	0.4	0.0	IDT.Exomev2.targets.hg38.bed	18077.0	33951579.0	7.0	-0.0	-0.0	34156137.0
filler-D0001776_full_basic_stats	1752027.0	1752027.0	878552.0	809313.0	746111.0	63202.0	1497161.0	254866.0	0.9	0.1	0.9	0.1	0.9	155.0	175.0	207.0	191.2	44.1	1.0	1.0	1.0	246026192.0	2.5	0.5	41.0	0.0	2.0	6.0	8.0	1.0	1.0	363.0	0.0	0.1	0.2	0.2	0.4	0.7	0.7	0.8	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.8	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	21581.0	33951579.0	10.0	-0.0	-0.0	34156137.0
filler-D0002199_full_basic_stats	2547523.0	2547523.0	1277162.0	1103922.0	1020138.0	83784.0	2221704.0	325819.0	0.9	0.1	0.9	0.1	0.9	152.0	171.0	188.0	171.0	22.7	1.0	1.0	1.0	358093554.0	3.7	0.5	80.0	1.0	3.0	8.0	11.0	1.0	1.0	2857.0	0.0	0.1	0.4	0.2	0.5	0.8	0.8	0.8	0.9	1.0	1.0	1.1	1.1	1.1	1.0	1.0	0.9	0.7	0.3	0.3	IDT.Exomev2.targets.hg38.bed	32152.0	33951579.0	89.0	-0.4	-0.0	34156137.0
filler-D0002285_full_basic_stats	1326372.0	1326372.0	665236.0	639089.0	589885.0	49204.0	1124283.0	202089.0	0.8	0.2	0.9	0.1	1.0	159.0	179.0	264.0	207.6	61.9	1.0	1.0	1.0	186860862.0	1.9	0.6	79.0	0.0	2.0	5.0	6.0	1.0	1.0	1091.0	0.0	0.1	0.4	0.2	0.5	0.7	0.8	0.9	1.0	1.0	1.0	1.0	1.0	1.0	1.0	1.0	0.8	0.6	0.5	0.0	IDT.Exomev2.targets.hg38.bed	16237.0	33951579.0	7.0	-0.0	-0.0	34156137.0
filler-D0002463_full_basic_stats	2298725.0	2298725.0	1152594.0	993823.0	918324.0	75499.0	2001428.0	297297.0	0.9	0.1	0.9	0.1	0.9	152.0	170.0	187.0	170.6	21.9	1.0	1.0	1.0	323873713.0	3.3	0.5	133.0	0.0	3.0	7.0	10.0	1.0	1.0	2226.0	75.0	0.1	0.3	0.4	0.6	0.8	0.8	0.9	0.9	1.0	1.0	1.1	1.0	1.0	1.0	1.0	0.8	0.6	0.5	0.0	IDT.Exomev2.targets.hg38.bed	28185.0	33951579.0	40.0	-0.2	-0.0	34156137.0
filler-D0002606_full_basic_stats	2041472.0	2041472.0	1023546.0	922508.0	851905.0	70603.0	1754998.0	286474.0	0.9	0.1	0.9	0.1	0.9	158.0	175.0	199.0	186.5	35.4	1.0	1.0	1.0	288419417.0	3.0	0.5	87.0	0.0	3.0	7.0	9.0	1.0	1.0	1483.0	0.0	0.1	0.3	0.3	0.5	0.8	0.8	0.9	1.0	1.0	1.0	1.0	1.0	1.0	1.0	0.9	0.8	0.5	0.2	0.5	IDT.Exomev2.targets.hg38.bed	24691.0	33951579.0	27.0	-0.1	-0.0	34156137.0
filler-D0002607_full_basic_stats	1826736.0	1826736.0	916086.0	872801.0	806056.0	66745.0	1555211.0	271525.0	0.9	0.1	0.9	0.1	1.0	158.0	179.0	234.0	202.4	56.1	1.0	1.0	1.0	256351458.0	2.6	0.5	152.0	0.0	2.0	6.0	8.0	1.0	1.0	2639.0	306.0	0.1	0.3	0.3	0.5	0.7	0.7	0.9	1.0	1.0	1.0	1.0	1.0	1.0	1.0	1.0	0.9	0.6	0.7	0.7	IDT.Exomev2.targets.hg38.bed	21995.0	33951579.0	27.0	-0.1	-0.0	34156137.0
filler-D0002686_full_basic_stats	1812548.0	1812548.0	908829.0	783979.0	723163.0	60816.0	1570984.0	241564.0	0.9	0.1	0.9	0.1	0.9	153.0	172.0	190.0	172.9	24.5	1.0	1.0	1.0	254421576.0	2.6	0.5	92.0	0.0	2.0	6.0	8.0	1.0	1.0	1957.0	0.0	0.1	0.4	0.2	0.6	0.8	0.8	0.9	0.9	1.0	1.0	1.1	1.0	1.0	1.0	1.0	0.8	0.6	0.3	0.0	IDT.Exomev2.targets.hg38.bed	22164.0	33951579.0	13.0	-0.1	-0.0	34156137.0
filler-D0002735_full_basic_stats	2956097.0	2956097.0	1482575.0	1455894.0	1342601.0	113293.0	2491124.0	464973.0	0.8	0.2	0.9	0.1	1.0	166.0	183.0	314.0	221.7	70.7	1.0	1.0	1.0	421502306.0	4.3	0.4	214.0	1.0	4.0	9.0	12.0	1.0	1.0	5243.0	980.0	0.1	0.2	0.4	0.5	0.6	0.7	0.9	1.0	1.0	1.0	1.0	1.0	1.0	1.0	1.0	0.8	0.4	0.5	0.7	IDT.Exomev2.targets.hg38.bed	35802.0	33951579.0	362.0	-4.6	-0.0	34156137.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_full_basic_stats_table_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	frac_bases_gt30x	frac_bases_gt30x	`seqtool-frac_bases_gt30x`
\|\|	frac_bases_gt100x	frac_bases_gt100x	`seqtool-frac_bases_gt100x`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`
\|\|	min_depth	min_depth	`seqtool-min_depth`
\|\|	mean_depth	mean_depth	`seqtool-mean_depth`
\|\|	cv_depth	cv_depth	`seqtool-cv_depth`
\|\|	max_depth	max_depth	`seqtool-max_depth`
\|\|	q1_depth	q1_depth	`seqtool-q1_depth`
\|\|	q5_depth	q5_depth	`seqtool-q5_depth`
\|\|	q50_depth	q50_depth	`seqtool-q50_depth`
\|\|	q95_depth	q95_depth	`seqtool-q95_depth`
\|\|	q99_depth	q99_depth	`seqtool-q99_depth`
\|\|	lt100x	lt100x	`seqtool-lt100x`
\|\|	lt700x	lt700x	`seqtool-lt700x`
\|\|	n_bases_gt30x	n_bases_gt30x	`seqtool-n_bases_gt30x`
\|\|	n_bases_gt100x	n_bases_gt100x	`seqtool-n_bases_gt100x`
\|\|	gc_0.0	gc_0.0	`seqtool-gc_0_0`
\|\|	gc_0.05	gc_0.05	`seqtool-gc_0_05`
\|\|	gc_0.1	gc_0.1	`seqtool-gc_0_1`
\|\|	gc_0.15	gc_0.15	`seqtool-gc_0_15`
\|\|	gc_0.2	gc_0.2	`seqtool-gc_0_2`
\|\|	gc_0.25	gc_0.25	`seqtool-gc_0_25`
\|\|	gc_0.3	gc_0.3	`seqtool-gc_0_3`
\|\|	gc_0.35	gc_0.35	`seqtool-gc_0_35`
\|\|	gc_0.4	gc_0.4	`seqtool-gc_0_4`
\|\|	gc_0.45	gc_0.45	`seqtool-gc_0_45`
\|\|	gc_0.5	gc_0.5	`seqtool-gc_0_5`
\|\|	gc_0.55	gc_0.55	`seqtool-gc_0_55`
\|\|	gc_0.6	gc_0.6	`seqtool-gc_0_6`
\|\|	gc_0.65	gc_0.65	`seqtool-gc_0_65`
\|\|	gc_0.7	gc_0.7	`seqtool-gc_0_7`
\|\|	gc_0.75	gc_0.75	`seqtool-gc_0_75`
\|\|	gc_0.8	gc_0.8	`seqtool-gc_0_8`
\|\|	gc_0.85	gc_0.85	`seqtool-gc_0_85`
\|\|	gc_0.9	gc_0.9	`seqtool-gc_0_9`
\|\|	gc_0.95	gc_0.95	`seqtool-gc_0_95`
\|\|	gc_1.0	gc_1.0	`seqtool-gc_1_0`
\|\|	bed	bed	`seqtool-bed`
\|\|	saturation_at_1000000_reads	saturation_at_1000000_reads	`seqtool-saturation_at_1000000_reads`
\|\|	roi_size	roi_size	`seqtool-roi_size`
\|\|	contam	contam	`seqtool-contam`
\|\|	n_sites	n_sites	`seqtool-n_sites`
\|\|	loglik	loglik	`seqtool-loglik`
\|\|	lrt	lrt	`seqtool-lrt`
\|\|	bed_base_count	bed_base_count	`seqtool-bed_base_count`

Picard

Tools for manipulating high-throughput sequencing data.http://broadinstitute.github.io/picard

Hybrid-selection metrics

Parsed from Picard HsMetrics tool that takes a SAM/BAM file input and collects metrics that are specific for sequence datasets generated through hybrid-selection. Hybrid-selection (HS) is the most commonly used technique to capture exon-specific sequences for targeted sequencing experiments such as exome sequencing.

Showing ²⁹/₂₉ rows and ²⁴/₂₉ columns.

Sample Name	At dropout	Bait design efficiency	Bait territory	Fold 80 base penalty	Fold enrichment	Gc dropout	Het SNP q	Het SNP sensitivity	Near-bait bases	Off-bait bases	On-bait bases	On-target bases	Usable bases on-bait	Usable bases on-target	PF bases	PF bases aligned	PF reads	Selected bases	PF unique reads	PF unique bases aligned	PF unique reads aligned	Total reads	Max target coverage	Mean bait coverage	Mean target coverage	Median target coverage	On-bait vs selected	Target territory	Zero coverage targets
NTC-D0002235	1.4	0.8	42301960.0	3.1	51.4	1.4	5.0	0.7	74.7Mb	22.1Mb	201.9Mb	105.2Mb	67.5%	35.2%	299.1Mb	298.7Mb	2.1M	92.6%	2.1M	298.7Mb	2.1M	2.1M	53.0	4.8	3.1	3.0	0.7	34149253.0	5.3%
T13-D0003273	1.4	0.8	42301960.0	3.3	50.4	1.2	5.0	0.7	83.7Mb	23.8Mb	211.7Mb	113.6Mb	66.2%	35.6%	319.6Mb	319.2Mb	2.2M	92.6%	2.2M	319.2Mb	2.2M	2.2M	52.0	5.0	3.3	3.0	0.7	34149253.0	4.6%
T13-D0003573	6.6	0.8	42301960.0	2.5	52.4	0.2	7.0	0.8	118.0Mb	34.0Mb	336.3Mb	170.9Mb	68.8%	35.0%	488.8Mb	488.2Mb	3.5M	93.0%	3.5M	488.2Mb	3.5M	3.5M	230.0	7.9	5.0	5.0	0.7	34149253.0	2.6%
T18-D0003095	4.1	0.8	42301960.0	1.8	50.9	0.2	6.0	0.7	91.5Mb	26.0Mb	237.3Mb	126.3Mb	66.8%	35.6%	355.3Mb	354.9Mb	2.5M	92.7%	2.5M	354.9Mb	2.5M	2.5M	52.0	5.6	3.7	3.0	0.7	34149253.0	4.0%
T18-D0003137	2.6	0.8	42301960.0	2.5	49.8	0.7	4.0	0.6	63.7Mb	17.9Mb	154.6Mb	85.0Mb	65.4%	36.0%	236.5Mb	236.2Mb	1.7M	92.4%	1.7M	236.2Mb	1.7M	1.7M	37.0	3.7	2.5	2.0	0.7	34149253.0	7.9%
T21-D0002837	1.1	0.8	42301960.0	1.8	49.8	1.4	5.0	0.7	90.4Mb	25.4Mb	219.6Mb	120.3Mb	65.4%	35.8%	335.8Mb	335.4Mb	2.4M	92.4%	2.4M	335.4Mb	2.4M	2.4M	41.0	5.2	3.5	3.0	0.7	34149253.0	4.2%
T21-D0002994	2.5	0.8	42301960.0	3.3	51.6	0.5	5.0	0.7	78.9Mb	23.1Mb	215.6Mb	112.1Mb	67.8%	35.3%	318.0Mb	317.6Mb	2.3M	92.7%	2.3M	317.6Mb	2.3M	2.3M	52.0	5.1	3.3	3.0	0.7	34149253.0	4.6%
T21-D0003169	1.2	0.8	42301960.0	1.8	50.1	1.4	7.0	0.8	137.9Mb	40.4Mb	344.4Mb	186.3Mb	65.8%	35.6%	523.3Mb	522.6Mb	3.7M	92.3%	3.7M	522.6Mb	3.7M	3.7M	187.0	8.1	5.5	5.0	0.7	34149253.0	2.1%
filler-D0000114	0.6	0.8	42301960.0	2.8	50.9	1.6	5.0	0.7	70.6Mb	20.2Mb	183.6Mb	97.1Mb	66.8%	35.4%	274.8Mb	274.4Mb	1.9M	92.6%	1.9M	274.4Mb	1.9M	1.9M	35.0	4.3	2.8	3.0	0.7	34149253.0	5.9%
filler-D0000192	2.8	0.8	42301960.0	1.8	51.6	0.6	5.0	0.7	86.9Mb	25.3Mb	236.9Mb	122.8Mb	67.8%	35.1%	349.5Mb	349.1Mb	2.5M	92.7%	2.5M	349.1Mb	2.5M	2.5M	46.0	5.6	3.6	3.0	0.7	34149253.0	4.0%
filler-D0000329	0.4	0.8	42301960.0	2.8	51.0	2.5	5.0	0.7	69.9Mb	20.3Mb	184.1Mb	97.3Mb	67.0%	35.4%	274.6Mb	274.3Mb	1.9M	92.6%	1.9M	274.3Mb	1.9M	1.9M	38.0	4.4	2.8	3.0	0.7	34149253.0	6.1%
filler-D0000548	0.2	0.8	42301960.0	2.7	49.6	2.4	4.0	0.6	68.9Mb	19.9Mb	166.9Mb	91.3Mb	65.2%	35.7%	256.1Mb	255.8Mb	1.8M	92.2%	1.8M	255.8Mb	1.8M	1.8M	21.0	3.9	2.7	2.0	0.7	34149253.0	6.7%
filler-D0000555	0.5	0.8	42301960.0	1.9	50.3	2.0	3.0	0.5	47.1Mb	13.5Mb	118.7Mb	63.8Mb	66.1%	35.5%	179.6Mb	179.3Mb	1.3M	92.4%	1.3M	179.3Mb	1.3M	1.3M	25.0	2.8	1.9	2.0	0.7	34149253.0	12.4%
filler-D0000644	1.7	0.8	42301960.0	2.9	50.7	1.3	5.0	0.7	71.9Mb	20.9Mb	185.1Mb	98.9Mb	66.5%	35.5%	278.3Mb	277.9Mb	2.0M	92.5%	2.0M	277.9Mb	2.0M	2.0M	37.0	4.4	2.9	3.0	0.7	34149253.0	6.0%
filler-D0000668	1.2	0.8	42301960.0	2.1	50.5	1.4	4.0	0.6	53.1Mb	15.4Mb	135.5Mb	72.6Mb	66.3%	35.5%	204.4Mb	204.1Mb	1.5M	92.4%	1.5M	204.1Mb	1.5M	1.5M	29.0	3.2	2.1	2.0	0.7	34149253.0	9.9%
filler-D0000674	0.6	0.8	42301960.0	2.5	49.7	1.9	4.0	0.6	63.8Mb	17.8Mb	154.1Mb	84.7Mb	65.3%	35.9%	236.1Mb	235.7Mb	1.7M	92.4%	1.7M	235.7Mb	1.7M	1.7M	90.0	3.6	2.5	2.0	0.7	34149253.0	7.7%
filler-D0000822	1.3	0.8	42301960.0	3.4	51.0	1.4	5.0	0.7	83.6Mb	24.4Mb	219.8Mb	116.0Mb	67.0%	35.3%	328.2Mb	327.8Mb	2.3M	92.6%	2.3M	327.8Mb	2.3M	2.3M	41.0	5.2	3.4	3.0	0.7	34149253.0	4.5%
filler-D0001021	1.1	0.8	42301960.0	2.9	50.6	1.4	5.0	0.7	71.2Mb	20.0Mb	181.5Mb	97.4Mb	66.5%	35.7%	273.0Mb	272.7Mb	1.9M	92.7%	1.9M	272.7Mb	1.9M	1.9M	44.0	4.3	2.9	3.0	0.7	34149253.0	6.0%
filler-D0001310	1.6	0.8	42301960.0	1.8	50.7	1.0	5.0	0.7	87.3Mb	25.0Mb	225.2Mb	120.0Mb	66.6%	35.5%	337.9Mb	337.5Mb	2.4M	92.6%	2.4M	337.5Mb	2.4M	2.4M	49.0	5.3	3.5	3.0	0.7	34149253.0	4.2%
filler-D0001324	1.2	0.8	42301960.0	3.1	50.7	1.2	5.0	0.7	76.0Mb	21.9Mb	196.2Mb	104.6Mb	66.6%	35.5%	294.5Mb	294.1Mb	2.1M	92.5%	2.1M	294.1Mb	2.1M	2.1M	42.0	4.6	3.1	3.0	0.7	34149253.0	5.3%
filler-D0001376	1.9	0.8	42301960.0	2.1	51.4	0.8	4.0	0.6	50.2Mb	14.8Mb	135.5Mb	70.9Mb	67.5%	35.4%	200.6Mb	200.4Mb	1.4M	92.6%	1.4M	200.4Mb	1.4M	1.4M	34.0	3.2	2.1	2.0	0.7	34149253.0	10.3%
filler-D0001776	1.3	0.8	42301960.0	2.6	50.5	1.4	4.0	0.6	64.0Mb	18.7Mb	163.0Mb	87.5Mb	66.3%	35.6%	246.0Mb	245.7Mb	1.8M	92.4%	1.8M	245.7Mb	1.8M	1.8M	30.0	3.9	2.6	2.0	0.7	34149253.0	7.2%
filler-D0002199	2.9	0.8	42301960.0	1.9	51.5	0.7	6.0	0.7	89.5Mb	25.9Mb	242.2Mb	126.4Mb	67.6%	35.3%	358.1Mb	357.6Mb	2.5M	92.8%	2.5M	357.6Mb	2.5M	2.5M	49.0	5.7	3.7	3.0	0.7	34149253.0	3.8%
filler-D0002285	0.6	0.8	42301960.0	2.0	50.0	1.6	4.0	0.6	49.9Mb	14.1Mb	122.6Mb	66.9Mb	65.6%	35.8%	186.9Mb	186.6Mb	1.3M	92.4%	1.3M	186.6Mb	1.3M	1.3M	26.0	2.9	2.0	2.0	0.7	34149253.0	11.5%
filler-D0002463	1.0	0.8	42301960.0	3.3	51.6	1.2	5.0	0.7	80.4Mb	23.7Mb	219.4Mb	113.5Mb	67.8%	35.1%	323.9Mb	323.5Mb	2.3M	92.7%	2.3M	323.5Mb	2.3M	2.3M	75.0	5.2	3.3	3.0	0.7	34149253.0	4.5%
filler-D0002606	0.3	0.8	42301960.0	3.0	50.8	2.0	5.0	0.7	74.4Mb	21.3Mb	192.3Mb	102.4Mb	66.7%	35.5%	288.4Mb	288.0Mb	2.0M	92.6%	2.0M	288.0Mb	2.0M	2.0M	37.0	4.5	3.0	3.0	0.7	34149253.0	5.5%
filler-D0002607	1.0	0.8	42301960.0	2.7	50.2	1.3	4.0	0.6	67.9Mb	19.1Mb	169.0Mb	92.1Mb	65.9%	35.9%	256.4Mb	256.0Mb	1.8M	92.5%	1.8M	256.0Mb	1.8M	1.8M	39.0	4.0	2.7	2.0	0.7	34149253.0	6.7%
filler-D0002686	0.6	0.8	42301960.0	2.6	51.3	1.7	4.0	0.6	63.7Mb	18.9Mb	171.5Mb	89.6Mb	67.4%	35.2%	254.4Mb	254.1Mb	1.8M	92.6%	1.8M	254.1Mb	1.8M	1.8M	38.0	4.1	2.6	2.0	0.7	34149253.0	6.9%
filler-D0002735	0.9	0.8	42301960.0	2.2	49.3	1.4	6.0	0.8	115.9Mb	32.1Mb	272.9Mb	152.5Mb	64.8%	36.2%	421.5Mb	421.0Mb	3.0M	92.4%	3.0M	421.0Mb	3.0M	3.0M	65.0	6.5	4.5	4.0	0.7	34149253.0	2.9%

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: picard_hsmetrics_table_table

Sort	Column	Description	ID	Scale
\|\|	At dropout	A measure of how undercovered <= 50% GC regions are relative to the mean.	`hsmetrics-AT_DROPOUT`
\|\|	Bait design efficiency	Target territory / bait territory. 1 == perfectly efficient, 0.5 = half of baited bases are not target.	`hsmetrics-BAIT_DESIGN_EFFICIENCY`
\|\|	Bait territory	The number of bases which have one or more baits on top of them.	`hsmetrics-BAIT_TERRITORY`
\|\|	Fold 80 base penalty	The fold over-coverage necessary to raise 80% of bases in "non-zero-cvg" targets to the mean coverage level in those targets.	`hsmetrics-FOLD_80_BASE_PENALTY`
\|\|	Fold enrichment	The fold by which the baited region has been amplified above genomic background.	`hsmetrics-FOLD_ENRICHMENT`
\|\|	Gc dropout	A measure of how undercovered >= 50% GC regions are relative to the mean.	`hsmetrics-GC_DROPOUT`
\|\|	Het SNP q	The Phred Scaled Q Score of the theoretical HET SNP sensitivity.	`hsmetrics-HET_SNP_Q`
\|\|	Het SNP sensitivity	The theoretical HET SNP sensitivity.	`hsmetrics-HET_SNP_SENSITIVITY`
\|\|	Near-bait bases	The number of PF aligned bases that mapped to within a fixed interval of a baited region, but not on a baited region.	`hsmetrics-NEAR_BAIT_BASES`	base_count
\|\|	Off-bait bases	The number of PF aligned bases that mapped to neither on or near a bait.	`hsmetrics-OFF_BAIT_BASES`	base_count
\|\|	On-bait bases	The number of PF aligned bases that mapped to a baited region of the genome.	`hsmetrics-ON_BAIT_BASES`	base_count
\|\|	On-target bases	The number of PF aligned bases that mapped to a targeted region of the genome.	`hsmetrics-ON_TARGET_BASES`	base_count
\|\|	Usable bases on-bait	The number of aligned, de-duped, on-bait bases out of the PF bases available.	`hsmetrics-PCT_USABLE_BASES_ON_BAIT`
\|\|	Usable bases on-target	The number of aligned, de-duped, on-target bases out of the PF bases available.	`hsmetrics-PCT_USABLE_BASES_ON_TARGET`
\|\|	PF bases	The number of bases in the PF reads.	`hsmetrics-PF_BASES`	base_count
\|\|	PF bases aligned	The number of PF unique bases that are aligned with mapping score > 0 to the reference genome.	`hsmetrics-PF_BASES_ALIGNED`	base_count
\|\|	PF reads	The number of reads that pass the vendor's filter.	`hsmetrics-PF_READS`	read_count
\|\|	Selected bases	On+Near Bait Bases / PF Bases Aligned.	`hsmetrics-PCT_SELECTED_BASES`
\|\|	PF unique reads	The number of PF reads that are not marked as duplicates.	`hsmetrics-PF_UNIQUE_READS`	read_count
\|\|	PF unique bases aligned	The number of bases in the PF aligned reads that are mapped to a reference base. Accounts for clipping and gaps.	`hsmetrics-PF_UQ_BASES_ALIGNED`	base_count
\|\|	PF unique reads aligned	The number of PF unique reads that are aligned with mapping score > 0 to the reference genome.	`hsmetrics-PF_UQ_READS_ALIGNED`	read_count
\|\|	Total reads	The total number of reads in the SAM or BAM file examine.	`hsmetrics-TOTAL_READS`	read_count
\|\|	Max target coverage	The maximum coverage of reads that mapped to target regions of an experiment.	`hsmetrics-MAX_TARGET_COVERAGE`
\|\|	Mean bait coverage	The mean coverage of all baits in the experiment.	`hsmetrics-MEAN_BAIT_COVERAGE`
\|\|	Mean target coverage	The mean coverage of targets.	`hsmetrics-MEAN_TARGET_COVERAGE`
\|\|	Median target coverage	The median coverage of targets.	`hsmetrics-MEDIAN_TARGET_COVERAGE`
\|\|	On-bait vs selected	The percentage of on+near bait bases that are on as opposed to near.	`hsmetrics-ON_BAIT_VS_SELECTED`
\|\|	Target territory	The unique number of target bases in the experiment where target is usually exons etc.	`hsmetrics-TARGET_TERRITORY`
\|\|	Zero coverage targets	The fraction of targets that did not reach coverage=1 over any base.	`hsmetrics-ZERO_CVG_TARGETS_PCT`

Hybrid-selection target coverage

The percentage of all target bases with at least x fold coverage.

Created with MultiQC

Insert Size

Plot shows the number of reads at a given insert size. Reads with different orientations are summed.

Created with MultiQC

Samtools

Version:


                      
                        1.21

HTSlib:


                      
                        1.23

Toolkit for interacting with BAM/CRAM files.http://www.htslib.orgDOI: 10.1093/bioinformatics/btp352

Percent mapped

Alignment metrics from samtools stats; mapped vs. unmapped reads vs. reads mapped with MQ0.

For a set of samples that have come from the same multiplexed library, similar numbers of reads for each sample are expected. Large differences in numbers might indicate issues during the library preparation process. Whilst large differences in read numbers may be controlled for in downstream processings (e.g. read count normalisation), you may wish to consider whether the read depths achieved have fallen below recommended levels depending on the applications.

Low alignment rates could indicate contamination of samples (e.g. adapter sequences), low sequencing quality or other artefacts. These can be further investigated in the sequence level QC (e.g. from FastQC).

Reads mapped with MQ0 often indicate that the reads are ambiguously mapped to multiple locations in the reference sequence. This can be due to repetitive regions in the genome, the presence of alternative contigs in the reference, or due to reads that are too short to be uniquely mapped. These reads are often filtered out in downstream analyses.

Created with MultiQC

Alignment stats

This module parses the output from samtools stats. All numbers in millions.

Created with MultiQC

Showing ²⁹/₂₉ rows and ¹³/₁₃ columns.

Sample Name	Total sequences	Mapped & paired	Properly paired	Duplicated	QC Failed	Reads MQ0	Mapped bases (CIGAR)	Bases Trimmed	Duplicated bases	Diff chromosomes	Other orientation	Inward pairs	Outward pairs
NTC-D0002235	2.1M	2.1M	1.8M	0.0M	0.0M	0.1M	298.7Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.0M	0.1M
T13-D0003273	2.2M	2.2M	2.0M	0.0M	0.0M	0.1M	319.2Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.1M	0.0M
T13-D0003573	3.5M	3.5M	3.0M	0.0M	0.0M	0.2M	488.3Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.6M	0.1M
T18-D0003095	2.5M	2.5M	2.2M	0.0M	0.0M	0.1M	354.9Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.2M	0.1M
T18-D0003137	1.7M	1.7M	1.6M	0.0M	0.0M	0.1M	236.2Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.8M	0.1M
T21-D0002837	2.4M	2.4M	2.3M	0.0M	0.0M	0.1M	335.4Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.1M	0.1M
T21-D0002994	2.3M	2.3M	2.0M	0.0M	0.0M	0.1M	317.6Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.0M	0.1M
T21-D0003169	3.7M	3.7M	3.5M	0.0M	0.0M	0.2M	522.7Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.8M	0.1M
filler-D0000114	1.9M	1.9M	1.8M	0.0M	0.0M	0.1M	274.5Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.9M	0.1M
filler-D0000192	2.5M	2.5M	2.1M	0.0M	0.0M	0.1M	349.1Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.2M	0.1M
filler-D0000329	1.9M	1.9M	1.8M	0.0M	0.0M	0.1M	274.3Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.9M	0.1M
filler-D0000548	1.8M	1.8M	1.8M	0.0M	0.0M	0.1M	255.8Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.9M	0.0M
filler-D0000555	1.3M	1.3M	1.2M	0.0M	0.0M	0.1M	179.3Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.6M	0.0M
filler-D0000644	2.0M	2.0M	1.8M	0.0M	0.0M	0.1M	277.9Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.9M	0.1M
filler-D0000668	1.5M	1.5M	1.4M	0.0M	0.0M	0.1M	204.1Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.7M	0.1M
filler-D0000674	1.7M	1.7M	1.6M	0.0M	0.0M	0.1M	235.8Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.8M	0.0M
filler-D0000822	2.3M	2.3M	2.0M	0.0M	0.0M	0.1M	327.8Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.1M	0.1M
filler-D0001021	1.9M	1.9M	1.8M	0.0M	0.0M	0.1M	272.7Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.9M	0.1M
filler-D0001310	2.4M	2.4M	2.2M	0.0M	0.0M	0.1M	337.5Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.1M	0.1M
filler-D0001324	2.1M	2.1M	1.9M	0.0M	0.0M	0.1M	294.1Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.0M	0.1M
filler-D0001376	1.4M	1.4M	1.3M	0.0M	0.0M	0.1M	200.4Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.7M	0.1M
filler-D0001776	1.8M	1.8M	1.6M	0.0M	0.0M	0.1M	245.7Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.8M	0.1M
filler-D0002199	2.5M	2.5M	2.2M	0.0M	0.0M	0.1M	357.7Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.2M	0.1M
filler-D0002285	1.3M	1.3M	1.3M	0.0M	0.0M	0.1M	186.6Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.6M	0.0M
filler-D0002463	2.3M	2.3M	2.0M	0.0M	0.0M	0.1M	323.5Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.1M	0.1M
filler-D0002606	2.0M	2.0M	1.8M	0.0M	0.0M	0.1M	288.1Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.0M	0.1M
filler-D0002607	1.8M	1.8M	1.7M	0.0M	0.0M	0.1M	256.0Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.9M	0.1M
filler-D0002686	1.8M	1.8M	1.6M	0.0M	0.0M	0.1M	254.1Mb	0.0Mb	0.0Mb	0.0M	0.0M	0.8M	0.1M
filler-D0002735	3.0M	3.0M	2.9M	0.0M	0.0M	0.1M	421.0Mb	0.0Mb	0.0Mb	0.0M	0.0M	1.4M	0.0M

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: samtools-stats-dp_table

Sort	Column	Description	ID	Scale
\|\|	Total sequences	Total sequences	`raw_total_sequences`	read_count
\|\|	Mapped & paired	Paired-end technology bit set + both mates mapped	`reads_mapped_and_paired`	read_count
\|\|	Properly paired	Proper-pair bit set	`reads_properly_paired`	read_count
\|\|	Duplicated	PCR or optical duplicate bit set	`reads_duplicated`	read_count
\|\|	QC Failed	QC Failed	`reads_QC_failed`	read_count
\|\|	Reads MQ0	Reads mapped and MQ=0	`reads_MQ0`	read_count
\|\|	Mapped bases (CIGAR)	Mapped bases (CIGAR)	`bases_mapped__cigar`	base_count
\|\|	Bases Trimmed	Bases Trimmed	`bases_trimmed`	base_count
\|\|	Duplicated bases	Duplicated bases	`bases_duplicated`	base_count
\|\|	Diff chromosomes	Pairs on different chromosomes	`pairs_on_different_chromosomes`	read_count
\|\|	Other orientation	Pairs with other orientation	`pairs_with_other_orientation`	read_count
\|\|	Inward pairs	Inward oriented pairs	`inward_oriented_pairs`	read_count
\|\|	Outward pairs	Outward oriented pairs	`outward_oriented_pairs`	read_count

Sambamba

Version:


                      
                        1.0.1

Toolkit for interacting with BAM/CRAM files.https://lomereiter.github.io/sambambaDOI: 10.1093/bioinformatics/btv098

It is functionally similar to Samtools, but the source code is written in the D Language. It allows for faster performance while still being easy to use.

Sambamba Markdup

Number of reads, categorised by duplication state. Pair counts are doubled - see help text for details.

The table in the Picard metrics file contains some columns referring read pairs and some referring to single reads.

To make the numbers in this plot sum correctly, values referring to pairs are doubled according to the scheme below:

Total Sorted Paired End Reads = (Sorted End Pairs * 2) - Duplicate Reads
Total Single End Reads = Single Ends - (2 * Single Unmatched Pairs)
Total Single Unmatched Reads = 2 * Single Unmatched Pairs

Created with MultiQC

UMI-tools

Version:


                      
                        1.1.5

Tools for dealing with Unique Molecular Identifiers (UMIs)/(RMTs) and scRNA-Seq barcodes.https://github.com/CGATOxford/UMI-toolsDOI: 10.1101/gr.209601.116

UMI-tools was run in parallel by chromosome. Report represents only stats from chr1

Deduplicated Reads

Created with MultiQC

UMI Stats

Statistics from running umi_tools dedup or umi_tools extract

Positions Dedup: Total number of positions deduplicated
Total UMIs: Total UMIs found in sample
Unique UMIs: Unique UMIs found in sample
Mean #UMI: Mean number of unique UMIs per position
Max #UMI: Max number of unique UMIs per position

Created with MultiQC

Sample Name	Positions Dedup	Total UMIs	Unique UMIs	Mean #UMI	Max #UMI
NTC-D0002235	111877	115272	2797	1.00	3
T13-D0003273	117924	122123	2923	1.00	3
T13-D0003573	185115	190576	3660	1.00	2
T18-D0003095	132494	136988	3189	1.00	3
T18-D0003137	89544	92942	2563	1.00	3
T21-D0002837	126670	132105	3252	1.00	3
T21-D0002994	119159	122716	2928	1.00	3
T21-D0003169	194104	201835	4155	1.00	3
filler-D0000114	101826	105723	2740	1.00	3
filler-D0000192	131324	135422	3007	1.00	2
filler-D0000329	102155	105343	2442	1.00	3
filler-D0000548	94668	98666	2666	1.00	3
filler-D0000555	67267	69866	2142	1.00	2
filler-D0000644	104415	108299	2695	1.00	2
filler-D0000668	76945	79559	2318	1.00	3
filler-D0000674	87916	91307	2515	1.00	2
filler-D0000822	121591	125411	2959	1.00	2
filler-D0001021	101151	104367	2593	1.00	3
filler-D0001310	124613	129436	3068	1.00	2
filler-D0001324	109446	113662	2824	1.00	3
filler-D0001376	75694	78054	2205	1.00	3
filler-D0001776	92244	96000	2633	1.00	3
filler-D0002199	135717	140072	3179	1.00	3
filler-D0002285	69715	72343	2174	1.00	3
filler-D0002463	120260	123884	2870	1.00	2
filler-D0002606	107193	111334	2685	1.00	2
filler-D0002607	95609	99368	2741	1.00	3
filler-D0002686	95180	98397	2696	1.00	2
filler-D0002735	156526	163170	3524	1.00	3

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: umitools_stats_violin_table

Sort	Column	Description	ID
\|\|	Positions Dedup	Total number of positions deduplicated	`positions_deduplicated`
\|\|	Total UMIs	Total UMIs found in sample	`total_umis`
\|\|	Unique UMIs	Unique UMIs found in sample	`unique_umis`
\|\|	Mean #UMI	Mean number of unique UMIs per position	`mean_umi_per_pos`
\|\|	Max #UMI	Max number of unique UMIs per position	`max_umi_per_pos`

fastp

Version:


                      
                        1.0.1

All-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).https://github.com/OpenGene/fastpDOI: 10.1093/bioinformatics/bty560

Fastp goes through fastq files in a folder and perform a series of quality control and filtering. Quality control and reporting are displayed both before and after filtering, allowing for a clear depiction of the consequences of the filtering process. Notably, the latter can be conducted on a variety of parameters including quality scores, length, as well as the presence of adapters, polyG, or polyX tailing.

Fastp was run on each flowcell lane independently. Only the last lane is represented in this section

Filtered Reads

Filtering statistics of sampled reads.

Created with MultiQC

Insert Sizes

Insert size estimation of sampled reads.

Created with MultiQC

Sequence Quality

Average sequencing quality over each base of all reads.

Created with MultiQC

GC Content

Average GC content over each base of all reads.

Created with MultiQC

N content

Average N content over each base of all reads.

Created with MultiQC

BCL Convert

Demultiplexes data and converts BCL files to FASTQ file formats for downstream analysis.https://support.illumina.com/sequencing/sequencing_software/bcl-convert.html

Warning: Detected multiple bclconvert files from the same sequencer run. Files were merged and undetermined stats were recalculated.

Sample Statistics

Statistics about each sample for each flowcell

Showing ³²/₃₂ rows and ⁹/₁₁ columns.

Sample Name	Clusters	Yield	Clusters/run	Yield/run	Bases ≥ Q30 (PF)	Bases ≥ Q30 (PF)	Perfect index	One mismatch index	Mean quality score	Index
LOW_FF-D0001384	3.8M	1152.9Mb	10.6%	10.5%	1091.0Mb	94.6%	98.0%	2.0%	38.9	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L2	0.5M	146.6Mb	1.3%	1.3%	138.8Mb	94.7%	98.1%	1.9%	38.9	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L4	0.5M	142.9Mb	1.3%	1.3%	134.8Mb	94.3%	97.9%	2.1%	38.9	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L1	0.5M	140.8Mb	1.3%	1.3%	132.6Mb	94.2%	97.5%	2.5%	38.8	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L3	0.5M	141.4Mb	1.3%	1.3%	133.1Mb	94.1%	97.9%	2.1%	38.8	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L6	0.5M	143.2Mb	1.3%	1.3%	135.4Mb	94.5%	98.0%	2.0%	38.9	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L5	0.5M	145.7Mb	1.3%	1.3%	138.2Mb	94.8%	98.2%	1.8%	39.0	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L8	0.5M	147.4Mb	1.4%	1.3%	140.6Mb	95.4%	98.1%	1.9%	39.1	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L7	0.5M	145.0Mb	1.3%	1.3%	137.7Mb	95.0%	98.1%	1.9%	39.0	AGATTAGC-CGCCTTAT
NTC-D0002235	1.1M	333.2Mb	3.1%	3.0%	315.3Mb	94.6%	97.9%	2.1%	38.9	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L2	0.1M	42.5Mb	0.4%	0.4%	40.2Mb	94.7%	98.0%	2.0%	38.9	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L4	0.1M	40.6Mb	0.4%	0.4%	38.3Mb	94.3%	97.8%	2.2%	38.9	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L1	0.1M	41.2Mb	0.4%	0.4%	38.8Mb	94.1%	97.4%	2.6%	38.8	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L3	0.1M	40.7Mb	0.4%	0.4%	38.3Mb	94.1%	97.7%	2.3%	38.8	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L6	0.1M	41.5Mb	0.4%	0.4%	39.2Mb	94.5%	98.0%	2.0%	38.9	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L5	0.1M	40.6Mb	0.4%	0.4%	38.5Mb	94.8%	98.0%	2.0%	39.0	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L8	0.1M	43.5Mb	0.4%	0.4%	41.5Mb	95.4%	98.2%	1.8%	39.1	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L7	0.1M	42.7Mb	0.4%	0.4%	40.5Mb	95.0%	98.1%	1.9%	39.0	CAAGACTC-CACCGTCA
T13-D0003273	1.2M	354.2Mb	3.3%	3.2%	335.5Mb	94.7%	98.2%	1.8%	38.9	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L2	0.2M	45.1Mb	0.4%	0.4%	42.8Mb	94.7%	98.3%	1.7%	38.9	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L4	0.1M	43.2Mb	0.4%	0.4%	40.8Mb	94.5%	98.2%	1.8%	38.9	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L1	0.1M	43.6Mb	0.4%	0.4%	41.1Mb	94.3%	97.9%	2.1%	38.8	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L3	0.1M	43.3Mb	0.4%	0.4%	40.7Mb	94.2%	98.1%	1.9%	38.8	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L6	0.1M	44.0Mb	0.4%	0.4%	41.6Mb	94.6%	98.3%	1.7%	38.9	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L5	0.1M	44.0Mb	0.4%	0.4%	41.8Mb	94.9%	98.3%	1.7%	39.0	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L8	0.2M	46.2Mb	0.4%	0.4%	44.1Mb	95.5%	98.4%	1.6%	39.1	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L7	0.1M	44.9Mb	0.4%	0.4%	42.6Mb	95.1%	98.4%	1.6%	39.0	ATGTTGCC-TAGAAGCC
T13-D0003573	1.8M	545.2Mb	5.0%	5.0%	516.9Mb	94.8%	98.2%	1.8%	39.0	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L2	0.2M	69.1Mb	0.6%	0.6%	65.6Mb	94.9%	98.4%	1.6%	39.0	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L4	0.2M	67.6Mb	0.6%	0.6%	63.9Mb	94.5%	98.0%	2.0%	38.9	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L1	0.2M	68.4Mb	0.6%	0.6%	64.5Mb	94.3%	97.8%	2.2%	38.8	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L3	0.2M	66.6Mb	0.6%	0.6%	62.9Mb	94.3%	98.1%	1.9%	38.9	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L6	0.2M	67.6Mb	0.6%	0.6%	64.0Mb	94.6%	98.3%	1.7%	38.9	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L5	0.2M	67.2Mb	0.6%	0.6%	63.9Mb	95.1%	98.4%	1.6%	39.0	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L8	0.2M	70.0Mb	0.6%	0.6%	66.9Mb	95.6%	98.4%	1.6%	39.1	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L7	0.2M	68.6Mb	0.6%	0.6%	65.2Mb	95.1%	98.3%	1.7%	39.0	CGACCTTA-GCTCTTAG
T18-D0003095	1.3M	395.8Mb	3.6%	3.6%	374.6Mb	94.7%	98.5%	1.5%	38.9	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L2	0.2M	50.4Mb	0.5%	0.5%	47.7Mb	94.7%	98.6%	1.4%	38.9	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L4	0.2M	48.6Mb	0.4%	0.4%	45.9Mb	94.4%	98.4%	1.6%	38.9	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L1	0.2M	48.6Mb	0.4%	0.4%	45.8Mb	94.2%	98.2%	1.8%	38.8	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L3	0.2M	48.2Mb	0.4%	0.4%	45.4Mb	94.2%	98.5%	1.5%	38.8	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L6	0.2M	48.9Mb	0.4%	0.4%	46.3Mb	94.6%	98.6%	1.4%	38.9	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L5	0.2M	49.9Mb	0.5%	0.5%	47.3Mb	94.8%	98.7%	1.3%	39.0	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L8	0.2M	51.2Mb	0.5%	0.5%	48.8Mb	95.4%	98.7%	1.3%	39.1	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L7	0.2M	49.9Mb	0.5%	0.5%	47.4Mb	95.0%	98.6%	1.4%	39.0	CAGCAGGT-CACTTAGG
T18-D0003137	0.9M	267.1Mb	2.5%	2.4%	251.9Mb	94.3%	98.2%	1.8%	38.9	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L2	0.1M	34.7Mb	0.3%	0.3%	32.8Mb	94.3%	98.3%	1.7%	38.9	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L4	0.1M	32.0Mb	0.3%	0.3%	30.1Mb	94.0%	98.1%	1.9%	38.8	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L1	0.1M	32.4Mb	0.3%	0.3%	30.4Mb	93.8%	97.8%	2.2%	38.7	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L3	0.1M	32.5Mb	0.3%	0.3%	30.5Mb	93.8%	98.2%	1.8%	38.8	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L6	0.1M	32.7Mb	0.3%	0.3%	30.8Mb	94.3%	98.3%	1.7%	38.8	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L5	0.1M	33.4Mb	0.3%	0.3%	31.6Mb	94.6%	98.4%	1.6%	38.9	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L8	0.1M	35.5Mb	0.3%	0.3%	33.7Mb	95.1%	98.4%	1.6%	39.0	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L7	0.1M	33.8Mb	0.3%	0.3%	32.0Mb	94.7%	98.4%	1.6%	38.9	TCTAGCTG-ATAGGTAA
T21-D0002837	1.3M	378.4Mb	3.5%	3.5%	357.0Mb	94.3%	98.5%	1.5%	38.9	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L2	0.2M	48.6Mb	0.4%	0.4%	45.8Mb	94.3%	98.7%	1.3%	38.9	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L4	0.2M	46.3Mb	0.4%	0.4%	43.6Mb	94.1%	98.4%	1.6%	38.8	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L1	0.2M	46.6Mb	0.4%	0.4%	43.7Mb	93.8%	98.2%	1.8%	38.7	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L3	0.2M	46.2Mb	0.4%	0.4%	43.3Mb	93.8%	98.5%	1.5%	38.8	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L6	0.2M	46.5Mb	0.4%	0.4%	43.8Mb	94.3%	98.6%	1.4%	38.8	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L5	0.2M	47.1Mb	0.4%	0.4%	44.5Mb	94.5%	98.7%	1.3%	38.9	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L8	0.2M	49.3Mb	0.5%	0.4%	46.8Mb	95.1%	98.7%	1.3%	39.0	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L7	0.2M	47.9Mb	0.4%	0.4%	45.4Mb	94.7%	98.6%	1.4%	38.9	ATTCGGCT-TTAACGTC
T21-D0002994	1.2M	355.2Mb	3.3%	3.2%	336.7Mb	94.8%	95.7%	4.3%	38.9	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L2	0.2M	45.1Mb	0.4%	0.4%	42.8Mb	94.8%	95.5%	4.5%	39.0	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L4	0.1M	43.4Mb	0.4%	0.4%	41.0Mb	94.5%	95.4%	4.6%	38.9	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L1	0.1M	43.6Mb	0.4%	0.4%	41.1Mb	94.2%	95.1%	4.9%	38.8	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L3	0.1M	43.7Mb	0.4%	0.4%	41.2Mb	94.3%	95.3%	4.7%	38.9	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L6	0.1M	43.9Mb	0.4%	0.4%	41.5Mb	94.6%	95.6%	4.4%	38.9	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L5	0.1M	44.6Mb	0.4%	0.4%	42.4Mb	95.0%	95.7%	4.3%	39.0	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L8	0.2M	45.9Mb	0.4%	0.4%	43.8Mb	95.5%	96.5%	3.5%	39.1	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L7	0.2M	45.0Mb	0.4%	0.4%	42.8Mb	95.1%	96.4%	3.6%	39.0	ATAAGCGG-CTGTTCTA
T21-D0003169	2.0M	586.6Mb	5.4%	5.4%	554.2Mb	94.5%	98.3%	1.7%	38.9	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L2	0.3M	75.2Mb	0.7%	0.7%	71.0Mb	94.5%	98.4%	1.6%	38.9	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L4	0.2M	70.8Mb	0.7%	0.6%	66.7Mb	94.2%	98.1%	1.9%	38.8	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L1	0.2M	71.5Mb	0.7%	0.7%	67.2Mb	94.0%	97.8%	2.2%	38.8	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L3	0.2M	72.6Mb	0.7%	0.7%	68.3Mb	94.0%	98.2%	1.8%	38.8	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L6	0.2M	72.9Mb	0.7%	0.7%	68.8Mb	94.4%	98.3%	1.7%	38.9	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L5	0.2M	73.4Mb	0.7%	0.7%	69.5Mb	94.7%	98.4%	1.6%	38.9	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L8	0.3M	75.8Mb	0.7%	0.7%	72.2Mb	95.2%	98.3%	1.7%	39.0	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L7	0.2M	74.4Mb	0.7%	0.7%	70.6Mb	94.9%	98.4%	1.6%	39.0	TAACTTGG-GTCGTGAA
filler-D0000114	1.0M	307.8Mb	2.8%	2.8%	291.2Mb	94.6%	97.8%	2.2%	38.9	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L2	0.1M	38.7Mb	0.4%	0.4%	36.6Mb	94.6%	97.9%	2.1%	38.9	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L4	0.1M	37.7Mb	0.3%	0.3%	35.5Mb	94.3%	97.6%	2.4%	38.8	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L1	0.1M	38.3Mb	0.4%	0.3%	36.1Mb	94.1%	97.3%	2.7%	38.8	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L3	0.1M	38.0Mb	0.3%	0.3%	35.7Mb	94.1%	97.8%	2.2%	38.8	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L6	0.1M	38.3Mb	0.4%	0.3%	36.2Mb	94.5%	98.0%	2.0%	38.9	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L5	0.1M	38.2Mb	0.4%	0.3%	36.2Mb	94.8%	98.1%	1.9%	38.9	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L8	0.1M	39.4Mb	0.4%	0.4%	37.6Mb	95.3%	98.0%	2.0%	39.1	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L7	0.1M	39.2Mb	0.4%	0.4%	37.3Mb	95.0%	98.1%	1.9%	39.0	CTTACGAA-ACGGACTG
filler-D0000192	1.3M	388.9Mb	3.6%	3.5%	368.5Mb	94.8%	98.5%	1.5%	38.9	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L2	0.2M	49.8Mb	0.5%	0.5%	47.2Mb	94.8%	98.6%	1.4%	39.0	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L4	0.2M	48.0Mb	0.4%	0.4%	45.3Mb	94.5%	98.4%	1.6%	38.9	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L1	0.2M	48.5Mb	0.4%	0.4%	45.8Mb	94.3%	98.1%	1.9%	38.8	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L3	0.2M	47.0Mb	0.4%	0.4%	44.3Mb	94.3%	98.5%	1.5%	38.8	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L6	0.2M	47.8Mb	0.4%	0.4%	45.2Mb	94.6%	98.6%	1.4%	38.9	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L5	0.2M	48.2Mb	0.4%	0.4%	45.7Mb	95.0%	98.6%	1.4%	39.0	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L8	0.2M	50.8Mb	0.5%	0.5%	48.5Mb	95.4%	98.6%	1.4%	39.1	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L7	0.2M	48.9Mb	0.4%	0.4%	46.5Mb	95.1%	98.5%	1.5%	39.0	CGCGGTAT-ATTACCGA
filler-D0000329	1.0M	305.4Mb	2.8%	2.8%	289.4Mb	94.7%	98.2%	1.8%	38.9	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L2	0.1M	39.1Mb	0.4%	0.4%	37.1Mb	94.8%	98.4%	1.6%	38.9	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L4	0.1M	38.2Mb	0.4%	0.3%	36.1Mb	94.5%	98.2%	1.8%	38.9	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L1	0.1M	37.2Mb	0.3%	0.3%	35.1Mb	94.3%	97.8%	2.2%	38.8	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L3	0.1M	37.1Mb	0.3%	0.3%	35.0Mb	94.2%	98.1%	1.9%	38.8	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L6	0.1M	37.3Mb	0.3%	0.3%	35.3Mb	94.6%	98.3%	1.7%	38.9	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L5	0.1M	38.7Mb	0.4%	0.4%	36.8Mb	95.0%	98.4%	1.6%	39.0	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L8	0.1M	39.5Mb	0.4%	0.4%	37.7Mb	95.5%	98.2%	1.8%	39.1	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L7	0.1M	38.3Mb	0.4%	0.3%	36.4Mb	95.1%	98.3%	1.7%	39.0	TATCCGCG-GTTGCATC
filler-D0000548	1.0M	288.5Mb	2.7%	2.6%	272.3Mb	94.4%	98.1%	1.9%	38.9	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L2	0.1M	37.0Mb	0.3%	0.3%	34.9Mb	94.4%	98.2%	1.8%	38.9	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L4	0.1M	34.8Mb	0.3%	0.3%	32.8Mb	94.2%	97.9%	2.1%	38.8	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L1	0.1M	35.1Mb	0.3%	0.3%	33.0Mb	93.8%	97.5%	2.5%	38.8	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L3	0.1M	35.3Mb	0.3%	0.3%	33.2Mb	93.9%	98.0%	2.0%	38.8	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L6	0.1M	35.6Mb	0.3%	0.3%	33.6Mb	94.3%	98.2%	1.8%	38.8	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L5	0.1M	36.0Mb	0.3%	0.3%	34.1Mb	94.6%	98.2%	1.8%	38.9	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L8	0.1M	37.9Mb	0.3%	0.3%	36.1Mb	95.0%	98.2%	1.8%	39.0	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L7	0.1M	36.7Mb	0.3%	0.3%	34.8Mb	94.7%	98.2%	1.8%	38.9	TCTCACCA-TTAACAGG
filler-D0000555	0.7M	201.8Mb	1.9%	1.8%	190.8Mb	94.5%	98.3%	1.7%	38.9	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L2	0.1M	26.3Mb	0.2%	0.2%	24.8Mb	94.5%	98.3%	1.7%	38.9	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L4	0.1M	24.7Mb	0.2%	0.2%	23.3Mb	94.3%	98.1%	1.9%	38.8	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L1	0.1M	25.2Mb	0.2%	0.2%	23.7Mb	94.1%	97.9%	2.1%	38.8	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L3	0.1M	24.2Mb	0.2%	0.2%	22.7Mb	94.1%	98.2%	1.8%	38.8	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L6	0.1M	24.9Mb	0.2%	0.2%	23.5Mb	94.4%	98.3%	1.7%	38.9	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L5	0.1M	24.5Mb	0.2%	0.2%	23.2Mb	94.7%	98.4%	1.6%	38.9	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L8	0.1M	26.7Mb	0.2%	0.2%	25.4Mb	95.2%	98.4%	1.6%	39.0	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L7	0.1M	25.3Mb	0.2%	0.2%	24.0Mb	94.9%	98.4%	1.6%	39.0	GCCAGCTA-TTGTTCGT
filler-D0000644	1.0M	311.7Mb	2.9%	2.8%	294.9Mb	94.6%	98.2%	1.8%	38.9	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L2	0.1M	40.0Mb	0.4%	0.4%	37.9Mb	94.7%	98.3%	1.7%	38.9	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L4	0.1M	38.1Mb	0.4%	0.3%	35.9Mb	94.3%	98.0%	2.0%	38.8	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L1	0.1M	38.8Mb	0.4%	0.4%	36.5Mb	94.1%	97.7%	2.3%	38.8	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L3	0.1M	38.2Mb	0.4%	0.3%	35.9Mb	94.1%	98.1%	1.9%	38.8	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L6	0.1M	38.3Mb	0.4%	0.3%	36.2Mb	94.5%	98.3%	1.7%	38.9	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L5	0.1M	38.2Mb	0.4%	0.3%	36.2Mb	94.8%	98.2%	1.8%	38.9	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L8	0.1M	40.7Mb	0.4%	0.4%	38.9Mb	95.4%	98.4%	1.6%	39.1	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L7	0.1M	39.3Mb	0.4%	0.4%	37.4Mb	95.0%	98.3%	1.7%	39.0	TCGCGACA-CGAGTAAT
filler-D0000668	0.8M	231.2Mb	2.1%	2.1%	217.7Mb	94.1%	98.2%	1.8%	38.8	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L2	0.1M	30.0Mb	0.3%	0.3%	28.2Mb	94.1%	98.3%	1.7%	38.8	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L4	0.1M	27.8Mb	0.3%	0.3%	26.1Mb	93.9%	98.1%	1.9%	38.8	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L1	0.1M	28.6Mb	0.3%	0.3%	26.8Mb	93.6%	97.9%	2.1%	38.7	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L3	0.1M	28.1Mb	0.3%	0.3%	26.3Mb	93.6%	98.1%	1.9%	38.7	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L6	0.1M	28.8Mb	0.3%	0.3%	27.1Mb	94.1%	98.3%	1.7%	38.8	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L5	0.1M	28.3Mb	0.3%	0.3%	26.7Mb	94.3%	98.4%	1.6%	38.8	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L8	0.1M	30.4Mb	0.3%	0.3%	28.8Mb	94.9%	98.4%	1.6%	39.0	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L7	0.1M	29.3Mb	0.3%	0.3%	27.7Mb	94.5%	98.4%	1.6%	38.9	TCGAACAC-GCGAGGTT
filler-D0000674	0.9M	265.2Mb	2.4%	2.4%	250.4Mb	94.4%	98.4%	1.6%	38.9	AGGTAACA-GCACGATG
↳ filler-D0000674 - L2	0.1M	34.4Mb	0.3%	0.3%	32.5Mb	94.5%	98.4%	1.6%	38.9	AGGTAACA-GCACGATG
↳ filler-D0000674 - L4	0.1M	31.8Mb	0.3%	0.3%	29.9Mb	94.2%	98.2%	1.8%	38.8	AGGTAACA-GCACGATG
↳ filler-D0000674 - L1	0.1M	32.9Mb	0.3%	0.3%	30.9Mb	93.9%	98.1%	1.9%	38.8	AGGTAACA-GCACGATG
↳ filler-D0000674 - L3	0.1M	32.5Mb	0.3%	0.3%	30.6Mb	94.0%	98.3%	1.7%	38.8	AGGTAACA-GCACGATG
↳ filler-D0000674 - L6	0.1M	32.6Mb	0.3%	0.3%	30.7Mb	94.3%	98.4%	1.6%	38.9	AGGTAACA-GCACGATG
↳ filler-D0000674 - L5	0.1M	32.7Mb	0.3%	0.3%	31.0Mb	94.6%	98.5%	1.5%	38.9	AGGTAACA-GCACGATG
↳ filler-D0000674 - L8	0.1M	34.8Mb	0.3%	0.3%	33.1Mb	95.2%	98.4%	1.6%	39.0	AGGTAACA-GCACGATG
↳ filler-D0000674 - L7	0.1M	33.6Mb	0.3%	0.3%	31.8Mb	94.8%	98.5%	1.5%	38.9	AGGTAACA-GCACGATG
filler-D0000822	1.2M	364.6Mb	3.3%	3.3%	345.3Mb	94.7%	98.4%	1.6%	38.9	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L2	0.2M	46.5Mb	0.4%	0.4%	44.0Mb	94.7%	98.4%	1.6%	38.9	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L4	0.2M	45.5Mb	0.4%	0.4%	43.0Mb	94.5%	98.3%	1.7%	38.9	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L1	0.2M	45.0Mb	0.4%	0.4%	42.4Mb	94.2%	98.0%	2.0%	38.8	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L3	0.1M	44.1Mb	0.4%	0.4%	41.6Mb	94.2%	98.3%	1.7%	38.8	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L6	0.1M	44.4Mb	0.4%	0.4%	42.1Mb	94.7%	98.5%	1.5%	38.9	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L5	0.2M	45.9Mb	0.4%	0.4%	43.6Mb	94.9%	98.6%	1.4%	39.0	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L8	0.2M	47.4Mb	0.4%	0.4%	45.2Mb	95.4%	98.5%	1.5%	39.1	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L7	0.2M	45.7Mb	0.4%	0.4%	43.4Mb	95.1%	98.5%	1.5%	39.0	CGGACGAT-TAGGTGGT
filler-D0001021	1.0M	303.1Mb	2.8%	2.8%	286.4Mb	94.5%	97.7%	2.3%	38.9	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L2	0.1M	38.8Mb	0.4%	0.4%	36.7Mb	94.5%	97.8%	2.2%	38.9	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L4	0.1M	36.7Mb	0.3%	0.3%	34.6Mb	94.2%	97.6%	2.4%	38.8	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L1	0.1M	37.2Mb	0.3%	0.3%	35.0Mb	94.0%	97.1%	2.9%	38.8	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L3	0.1M	36.8Mb	0.3%	0.3%	34.6Mb	94.0%	97.5%	2.5%	38.8	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L6	0.1M	37.3Mb	0.3%	0.3%	35.2Mb	94.4%	97.7%	2.3%	38.9	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L5	0.1M	37.9Mb	0.3%	0.3%	35.9Mb	94.7%	97.9%	2.1%	38.9	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L8	0.1M	39.8Mb	0.4%	0.4%	38.0Mb	95.3%	97.9%	2.1%	39.1	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L7	0.1M	38.5Mb	0.4%	0.4%	36.5Mb	94.9%	97.8%	2.2%	39.0	TGGAGATC-CAGCGGTA
filler-D0001217	0.0M	0.0Mb	0.0%		0.0Mb					CGCACTTC-AATATGCC
↳ filler-D0001217 - L2	0.0M	0.0Mb	0.0%		0.0Mb					CGCACTTC-AATATGCC
↳ filler-D0001217 - L4	0.0M	0.0Mb	0.0%		0.0Mb					CGCACTTC-AATATGCC
↳ filler-D0001217 - L1	0.0M	0.0Mb	0.0%		0.0Mb					CGCACTTC-AATATGCC
↳ filler-D0001217 - L3	0.0M	0.0Mb	0.0%		0.0Mb					CGCACTTC-AATATGCC
↳ filler-D0001217 - L6	0.0M	0.0Mb	0.0%		0.0Mb					CGCACTTC-AATATGCC
↳ filler-D0001217 - L5	0.0M	0.0Mb	0.0%		0.0Mb					CGCACTTC-AATATGCC
↳ filler-D0001217 - L8	0.0M	0.0Mb	0.0%		0.0Mb					CGCACTTC-AATATGCC
↳ filler-D0001217 - L7	0.0M	0.0Mb	0.0%		0.0Mb					CGCACTTC-AATATGCC
filler-D0001310	1.3M	377.8Mb	3.5%	3.4%	357.8Mb	94.7%	98.0%	2.0%	38.9	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L2	0.2M	48.1Mb	0.4%	0.4%	45.6Mb	94.7%	98.1%	1.9%	38.9	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L4	0.2M	46.2Mb	0.4%	0.4%	43.6Mb	94.4%	97.9%	2.1%	38.9	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L1	0.2M	46.7Mb	0.4%	0.4%	44.0Mb	94.2%	97.5%	2.5%	38.8	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L3	0.2M	46.2Mb	0.4%	0.4%	43.5Mb	94.3%	97.9%	2.1%	38.8	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L6	0.2M	47.1Mb	0.4%	0.4%	44.6Mb	94.6%	98.1%	1.9%	38.9	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L5	0.2M	46.9Mb	0.4%	0.4%	44.5Mb	94.9%	98.1%	1.9%	39.0	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L8	0.2M	48.9Mb	0.4%	0.4%	46.7Mb	95.4%	98.2%	1.8%	39.1	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L7	0.2M	47.8Mb	0.4%	0.4%	45.4Mb	95.0%	98.1%	1.9%	39.0	CCACAGCC-GCTATTGA
filler-D0001324	1.1M	330.5Mb	3.0%	3.0%	312.8Mb	94.7%	98.6%	1.4%	38.9	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L2	0.1M	42.6Mb	0.4%	0.4%	40.3Mb	94.7%	98.6%	1.4%	38.9	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L4	0.1M	40.7Mb	0.4%	0.4%	38.3Mb	94.3%	98.4%	1.6%	38.8	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L1	0.1M	41.7Mb	0.4%	0.4%	39.3Mb	94.2%	98.3%	1.7%	38.8	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L3	0.1M	40.4Mb	0.4%	0.4%	38.1Mb	94.2%	98.6%	1.4%	38.8	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L6	0.1M	40.7Mb	0.4%	0.4%	38.5Mb	94.6%	98.7%	1.3%	38.9	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L5	0.1M	40.0Mb	0.4%	0.4%	37.9Mb	94.8%	98.8%	1.2%	39.0	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L8	0.1M	42.8Mb	0.4%	0.4%	40.8Mb	95.4%	98.7%	1.3%	39.1	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L7	0.1M	41.7Mb	0.4%	0.4%	39.6Mb	95.0%	98.7%	1.3%	39.0	TTACGCGC-CTTAACGA
filler-D0001376	0.8M	225.6Mb	2.1%	2.1%	213.3Mb	94.6%	98.0%	2.0%	38.9	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L2	0.1M	29.1Mb	0.3%	0.3%	27.5Mb	94.6%	98.1%	1.9%	38.9	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L4	0.1M	27.6Mb	0.3%	0.3%	26.0Mb	94.3%	98.0%	2.0%	38.8	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L1	0.1M	27.8Mb	0.3%	0.3%	26.1Mb	94.0%	97.6%	2.4%	38.8	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L3	0.1M	27.3Mb	0.3%	0.2%	25.7Mb	94.1%	97.8%	2.2%	38.8	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L6	0.1M	27.8Mb	0.3%	0.3%	26.3Mb	94.4%	98.1%	1.9%	38.9	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L5	0.1M	28.3Mb	0.3%	0.3%	26.8Mb	94.7%	98.2%	1.8%	38.9	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L8	0.1M	29.3Mb	0.3%	0.3%	27.9Mb	95.3%	98.2%	1.8%	39.1	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L7	0.1M	28.4Mb	0.3%	0.3%	27.0Mb	95.0%	98.2%	1.8%	39.0	TCCAACTG-TGTCCGTA
filler-D0001664	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L2	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L4	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L1	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L3	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L6	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L5	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L8	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L7	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
filler-D0001776	0.9M	278.0Mb	2.6%	2.5%	262.7Mb	94.5%	98.5%	1.5%	38.9	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L2	0.1M	35.9Mb	0.3%	0.3%	33.9Mb	94.6%	98.6%	1.4%	38.9	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L4	0.1M	34.0Mb	0.3%	0.3%	32.0Mb	94.2%	98.3%	1.7%	38.8	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L1	0.1M	34.6Mb	0.3%	0.3%	32.5Mb	93.9%	98.1%	1.9%	38.8	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L3	0.1M	33.9Mb	0.3%	0.3%	31.9Mb	94.1%	98.5%	1.5%	38.8	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L6	0.1M	34.1Mb	0.3%	0.3%	32.2Mb	94.4%	98.6%	1.4%	38.9	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L5	0.1M	33.9Mb	0.3%	0.3%	32.1Mb	94.7%	98.6%	1.4%	38.9	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L8	0.1M	36.4Mb	0.3%	0.3%	34.6Mb	95.2%	98.5%	1.5%	39.0	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L7	0.1M	35.2Mb	0.3%	0.3%	33.4Mb	94.8%	98.6%	1.4%	39.0	ACAACAGG-TCCACTGT
filler-D0002199	1.3M	400.1Mb	3.7%	3.7%	378.9Mb	94.7%	98.0%	2.0%	38.9	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L2	0.2M	50.8Mb	0.5%	0.5%	48.2Mb	94.8%	98.1%	1.9%	38.9	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L4	0.2M	49.4Mb	0.5%	0.5%	46.6Mb	94.4%	97.7%	2.3%	38.9	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L1	0.2M	50.2Mb	0.5%	0.5%	47.3Mb	94.2%	97.5%	2.5%	38.8	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L3	0.2M	48.8Mb	0.4%	0.4%	46.0Mb	94.2%	97.9%	2.1%	38.8	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L6	0.2M	49.7Mb	0.5%	0.5%	47.0Mb	94.5%	98.0%	2.0%	38.9	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L5	0.2M	49.2Mb	0.5%	0.4%	46.7Mb	94.9%	98.1%	1.9%	39.0	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L8	0.2M	51.3Mb	0.5%	0.5%	49.0Mb	95.4%	98.2%	1.8%	39.1	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L7	0.2M	50.7Mb	0.5%	0.5%	48.2Mb	95.0%	98.1%	1.9%	39.0	CCAGACCG-GCTACTTG
filler-D0002285	0.7M	210.3Mb	1.9%	1.9%	198.6Mb	94.5%	97.9%	2.1%	38.9	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L2	0.1M	27.1Mb	0.2%	0.2%	25.5Mb	94.4%	98.0%	2.0%	38.9	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L4	0.1M	25.7Mb	0.2%	0.2%	24.2Mb	94.2%	97.8%	2.2%	38.8	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L1	0.1M	25.7Mb	0.2%	0.2%	24.1Mb	93.9%	97.4%	2.6%	38.8	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L3	0.1M	25.4Mb	0.2%	0.2%	23.9Mb	93.9%	97.8%	2.2%	38.8	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L6	0.1M	25.9Mb	0.2%	0.2%	24.5Mb	94.4%	98.0%	2.0%	38.9	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L5	0.1M	26.2Mb	0.2%	0.2%	24.8Mb	94.7%	98.0%	2.0%	38.9	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L8	0.1M	27.6Mb	0.3%	0.3%	26.3Mb	95.2%	98.0%	2.0%	39.0	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L7	0.1M	26.6Mb	0.2%	0.2%	25.2Mb	94.9%	98.1%	1.9%	39.0	ACCGAATA-TCAGCATC
filler-D0002463	1.2M	360.5Mb	3.3%	3.3%	341.4Mb	94.7%	98.1%	1.9%	38.9	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L2	0.2M	46.1Mb	0.4%	0.4%	43.7Mb	94.7%	98.1%	1.9%	38.9	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L4	0.1M	43.5Mb	0.4%	0.4%	41.0Mb	94.4%	98.0%	2.0%	38.9	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L1	0.1M	44.5Mb	0.4%	0.4%	41.9Mb	94.2%	97.7%	2.3%	38.8	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L3	0.1M	44.3Mb	0.4%	0.4%	41.8Mb	94.2%	97.9%	2.1%	38.8	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L6	0.1M	44.8Mb	0.4%	0.4%	42.3Mb	94.6%	98.2%	1.8%	38.9	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L5	0.1M	44.5Mb	0.4%	0.4%	42.2Mb	94.9%	98.3%	1.7%	39.0	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L8	0.2M	46.8Mb	0.4%	0.4%	44.6Mb	95.5%	98.2%	1.8%	39.1	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L7	0.2M	46.1Mb	0.4%	0.4%	43.8Mb	95.0%	98.2%	1.8%	39.0	AGGATGTC-ACTGGACG
filler-D0002606	1.1M	323.2Mb	3.0%	2.9%	305.5Mb	94.6%	98.3%	1.7%	38.9	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L2	0.1M	41.3Mb	0.4%	0.4%	39.0Mb	94.6%	98.4%	1.6%	38.9	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L4	0.1M	39.1Mb	0.4%	0.4%	36.8Mb	94.3%	98.2%	1.8%	38.8	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L1	0.1M	40.1Mb	0.4%	0.4%	37.7Mb	94.1%	97.9%	2.1%	38.8	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L3	0.1M	39.5Mb	0.4%	0.4%	37.1Mb	94.0%	98.1%	1.9%	38.8	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L6	0.1M	40.4Mb	0.4%	0.4%	38.2Mb	94.5%	98.4%	1.6%	38.9	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L5	0.1M	40.0Mb	0.4%	0.4%	37.8Mb	94.7%	98.3%	1.7%	38.9	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L8	0.1M	42.0Mb	0.4%	0.4%	40.0Mb	95.3%	98.5%	1.5%	39.0	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L7	0.1M	41.0Mb	0.4%	0.4%	38.9Mb	94.9%	98.4%	1.6%	39.0	TTCCTCAC-ACATGAGC
filler-D0002607	1.0M	289.3Mb	2.7%	2.6%	273.2Mb	94.4%	98.4%	1.6%	38.9	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L2	0.1M	37.3Mb	0.3%	0.3%	35.2Mb	94.4%	98.5%	1.5%	38.9	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L4	0.1M	35.2Mb	0.3%	0.3%	33.2Mb	94.2%	98.3%	1.7%	38.8	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L1	0.1M	35.4Mb	0.3%	0.3%	33.3Mb	93.9%	98.0%	2.0%	38.8	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L3	0.1M	35.4Mb	0.3%	0.3%	33.2Mb	93.9%	98.3%	1.7%	38.8	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L6	0.1M	35.8Mb	0.3%	0.3%	33.8Mb	94.4%	98.5%	1.5%	38.9	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L5	0.1M	35.8Mb	0.3%	0.3%	33.9Mb	94.6%	98.5%	1.5%	38.9	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L8	0.1M	37.7Mb	0.3%	0.3%	35.9Mb	95.2%	98.5%	1.5%	39.0	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L7	0.1M	36.6Mb	0.3%	0.3%	34.7Mb	94.8%	98.5%	1.5%	38.9	CTTGCTAT-TAGAGTCA
filler-D0002686	1.0M	285.6Mb	2.6%	2.6%	269.9Mb	94.5%	98.7%	1.3%	38.9	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L2	0.1M	37.0Mb	0.3%	0.3%	34.9Mb	94.5%	98.8%	1.2%	38.9	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L4	0.1M	34.7Mb	0.3%	0.3%	32.7Mb	94.2%	98.6%	1.4%	38.8	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L1	0.1M	35.5Mb	0.3%	0.3%	33.4Mb	94.0%	98.4%	1.6%	38.8	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L3	0.1M	34.9Mb	0.3%	0.3%	32.8Mb	94.0%	98.7%	1.3%	38.8	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L6	0.1M	35.3Mb	0.3%	0.3%	33.3Mb	94.3%	98.8%	1.2%	38.8	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L5	0.1M	34.9Mb	0.3%	0.3%	33.1Mb	94.8%	98.9%	1.1%	38.9	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L8	0.1M	37.2Mb	0.3%	0.3%	35.4Mb	95.3%	98.8%	1.2%	39.0	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L7	0.1M	36.2Mb	0.3%	0.3%	34.3Mb	94.9%	98.9%	1.1%	39.0	TTCTCTTA-TCCTCGAG
filler-D0002735	1.6M	469.0Mb	4.3%	4.3%	443.9Mb	94.6%	98.3%	1.7%	38.9	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L2	0.2M	60.4Mb	0.6%	0.6%	57.1Mb	94.6%	98.4%	1.6%	38.9	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L4	0.2M	56.2Mb	0.5%	0.5%	53.0Mb	94.4%	98.2%	1.8%	38.9	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L1	0.2M	57.6Mb	0.5%	0.5%	54.2Mb	94.2%	97.9%	2.1%	38.8	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L3	0.2M	57.2Mb	0.5%	0.5%	53.9Mb	94.2%	98.1%	1.9%	38.8	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L6	0.2M	58.3Mb	0.5%	0.5%	55.1Mb	94.5%	98.4%	1.6%	38.9	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L5	0.2M	57.8Mb	0.5%	0.5%	54.8Mb	94.8%	98.4%	1.6%	38.9	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L8	0.2M	62.0Mb	0.6%	0.6%	59.1Mb	95.4%	98.5%	1.5%	39.1	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L7	0.2M	59.6Mb	0.5%	0.5%	56.6Mb	95.0%	98.4%	1.6%	39.0	TTACTTCG-AAGATCGG

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: bclconvert-sample-stats-table_table

Sort	Column	Description	ID	Scale
\|\|	Clusters	Total number of clusters (read pairs) for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert-clusters`	read_count
\|\|	Yield	Total number of bases for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert-yield`	base_count
\|\|	Clusters/run	Percentage of clusters (read pairs) for this sample in this run, as determined by bclconvert demultiplexing	`bclconvert-percent_clusters`
\|\|	Yield/run	Percentage of sequenced bases for this sample in this run	`bclconvert-percent_yield`
\|\|	Bases ≥ Q30 (PF)	Number of bases with a Phred score of 30 or higher, passing filter (millions)	`bclconvert-yield_q30`	base_count
\|\|	Bases ≥ Q30 (PF)	Percent of bases with a Phred score of 30 or higher, passing filter (millions)	`bclconvert-percent_yield_q30`
\|\|	Perfect index	Percent of reads with perfect index (0 mismatches)	`bclconvert-percent_perfect_index_reads`
\|\|	One mismatch index	Percent of reads with one mismatch index	`bclconvert-percent_one_mismatch_index_reads`
\|\|	Mean quality score	Mean quality score of bases	`bclconvert-mean_quality`
\|\|	Index	Sample index	`bclconvert-index`
\|\|	Project	Sample project	`bclconvert-sample_project`

Lane Statistics

Statistics about each lane for each flowcell

Showing ⁸/₈ rows and ⁸/₈ columns.

Run ID - Lane	Clusters	Yield	Bases ≥ Q30 (PF)	Perfect index	One mismatch	Perfect index	One mismatch	Mean quality score
L1	4.5M	1343.3Mb	94.1%	4.4M	0.1M	97.7%	2.3%	38.8
↳ L1 - T21-D0003169	0.2M	71.5Mb	94.0%	0.2M	0.0M	97.8%	2.2%	38.8
↳ L1 - T21-D0002994	0.1M	43.6Mb	94.2%	0.1M	0.0M	95.1%	4.9%	38.8
↳ L1 - T13-D0003573	0.2M	68.4Mb	94.3%	0.2M	0.0M	97.8%	2.2%	38.8
↳ L1 - T13-D0003273	0.1M	43.6Mb	94.3%	0.1M	0.0M	97.9%	2.1%	38.8
↳ L1 - T18-D0003095	0.2M	48.6Mb	94.2%	0.2M	0.0M	98.2%	1.8%	38.8
↳ L1 - T18-D0003137	0.1M	32.4Mb	93.8%	0.1M	0.0M	97.8%	2.2%	38.7
↳ L1 - LOW_FF-D0001384	0.5M	140.8Mb	94.2%	0.5M	0.0M	97.5%	2.5%	38.8
↳ L1 - filler-D0000674	0.1M	32.9Mb	93.9%	0.1M	0.0M	98.1%	1.9%	38.8
↳ L1 - filler-D0001217	0.0M	0.0Mb		0.0M	0.0M
↳ L1 - filler-D0002607	0.1M	35.4Mb	93.9%	0.1M	0.0M	98.0%	2.0%	38.8
↳ L1 - filler-D0000548	0.1M	35.1Mb	93.8%	0.1M	0.0M	97.5%	2.5%	38.8
↳ L1 - filler-D0002606	0.1M	40.1Mb	94.1%	0.1M	0.0M	97.9%	2.1%	38.8
↳ L1 - filler-D0000668	0.1M	28.6Mb	93.6%	0.1M	0.0M	97.9%	2.1%	38.7
↳ L1 - filler-D0001376	0.1M	27.8Mb	94.0%	0.1M	0.0M	97.6%	2.4%	38.8
↳ L1 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L1 - filler-D0001776	0.1M	34.6Mb	93.9%	0.1M	0.0M	98.1%	1.9%	38.8
↳ L1 - filler-D0001324	0.1M	41.7Mb	94.2%	0.1M	0.0M	98.3%	1.7%	38.8
↳ L1 - filler-D0002686	0.1M	35.5Mb	94.0%	0.1M	0.0M	98.4%	1.6%	38.8
↳ L1 - filler-D0000644	0.1M	38.8Mb	94.1%	0.1M	0.0M	97.7%	2.3%	38.8
↳ L1 - filler-D0001021	0.1M	37.2Mb	94.0%	0.1M	0.0M	97.1%	2.9%	38.8
↳ L1 - filler-D0002199	0.2M	50.2Mb	94.2%	0.2M	0.0M	97.5%	2.5%	38.8
↳ L1 - filler-D0001310	0.2M	46.7Mb	94.2%	0.2M	0.0M	97.5%	2.5%	38.8
↳ L1 - filler-D0002285	0.1M	25.7Mb	93.9%	0.1M	0.0M	97.4%	2.6%	38.8
↳ L1 - filler-D0000822	0.2M	45.0Mb	94.2%	0.1M	0.0M	98.0%	2.0%	38.8
↳ L1 - filler-D0002735	0.2M	57.6Mb	94.2%	0.2M	0.0M	97.9%	2.1%	38.8
↳ L1 - T21-D0002837	0.2M	46.6Mb	93.8%	0.2M	0.0M	98.2%	1.8%	38.7
↳ L1 - filler-D0000192	0.2M	48.5Mb	94.3%	0.2M	0.0M	98.1%	1.9%	38.8
↳ L1 - filler-D0000329	0.1M	37.2Mb	94.3%	0.1M	0.0M	97.8%	2.2%	38.8
↳ L1 - filler-D0002463	0.1M	44.5Mb	94.2%	0.1M	0.0M	97.7%	2.3%	38.8
↳ L1 - filler-D0000555	0.1M	25.2Mb	94.1%	0.1M	0.0M	97.9%	2.1%	38.8
↳ L1 - filler-D0000114	0.1M	38.3Mb	94.1%	0.1M	0.0M	97.3%	2.7%	38.8
↳ L1 - NTC-D0002235	0.1M	41.2Mb	94.1%	0.1M	0.0M	97.4%	2.6%	38.8
L2	4.6M	1393.5Mb	94.6%	4.6M	0.1M	98.2%	1.8%	38.9
↳ L2 - T21-D0003169	0.3M	75.2Mb	94.5%	0.2M	0.0M	98.4%	1.6%	38.9
↳ L2 - T21-D0002994	0.2M	45.1Mb	94.8%	0.1M	0.0M	95.5%	4.5%	39.0
↳ L2 - T13-D0003573	0.2M	69.1Mb	94.9%	0.2M	0.0M	98.4%	1.6%	39.0
↳ L2 - T13-D0003273	0.2M	45.1Mb	94.7%	0.1M	0.0M	98.3%	1.7%	38.9
↳ L2 - T18-D0003095	0.2M	50.4Mb	94.7%	0.2M	0.0M	98.6%	1.4%	38.9
↳ L2 - T18-D0003137	0.1M	34.7Mb	94.3%	0.1M	0.0M	98.3%	1.7%	38.9
↳ L2 - LOW_FF-D0001384	0.5M	146.6Mb	94.7%	0.5M	0.0M	98.1%	1.9%	38.9
↳ L2 - filler-D0000674	0.1M	34.4Mb	94.5%	0.1M	0.0M	98.4%	1.6%	38.9
↳ L2 - filler-D0001217	0.0M	0.0Mb		0.0M	0.0M
↳ L2 - filler-D0002607	0.1M	37.3Mb	94.4%	0.1M	0.0M	98.5%	1.5%	38.9
↳ L2 - filler-D0000548	0.1M	37.0Mb	94.4%	0.1M	0.0M	98.2%	1.8%	38.9
↳ L2 - filler-D0002606	0.1M	41.3Mb	94.6%	0.1M	0.0M	98.4%	1.6%	38.9
↳ L2 - filler-D0000668	0.1M	30.0Mb	94.1%	0.1M	0.0M	98.3%	1.7%	38.8
↳ L2 - filler-D0001376	0.1M	29.1Mb	94.6%	0.1M	0.0M	98.1%	1.9%	38.9
↳ L2 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L2 - filler-D0001776	0.1M	35.9Mb	94.6%	0.1M	0.0M	98.6%	1.4%	38.9
↳ L2 - filler-D0001324	0.1M	42.6Mb	94.7%	0.1M	0.0M	98.6%	1.4%	38.9
↳ L2 - filler-D0002686	0.1M	37.0Mb	94.5%	0.1M	0.0M	98.8%	1.2%	38.9
↳ L2 - filler-D0000644	0.1M	40.0Mb	94.7%	0.1M	0.0M	98.3%	1.7%	38.9
↳ L2 - filler-D0001021	0.1M	38.8Mb	94.5%	0.1M	0.0M	97.8%	2.2%	38.9
↳ L2 - filler-D0002199	0.2M	50.8Mb	94.8%	0.2M	0.0M	98.1%	1.9%	38.9
↳ L2 - filler-D0001310	0.2M	48.1Mb	94.7%	0.2M	0.0M	98.1%	1.9%	38.9
↳ L2 - filler-D0002285	0.1M	27.1Mb	94.4%	0.1M	0.0M	98.0%	2.0%	38.9
↳ L2 - filler-D0000822	0.2M	46.5Mb	94.7%	0.2M	0.0M	98.4%	1.6%	38.9
↳ L2 - filler-D0002735	0.2M	60.4Mb	94.6%	0.2M	0.0M	98.4%	1.6%	38.9
↳ L2 - T21-D0002837	0.2M	48.6Mb	94.3%	0.2M	0.0M	98.7%	1.3%	38.9
↳ L2 - filler-D0000192	0.2M	49.8Mb	94.8%	0.2M	0.0M	98.6%	1.4%	39.0
↳ L2 - filler-D0000329	0.1M	39.1Mb	94.8%	0.1M	0.0M	98.4%	1.6%	38.9
↳ L2 - filler-D0002463	0.2M	46.1Mb	94.7%	0.2M	0.0M	98.1%	1.9%	38.9
↳ L2 - filler-D0000555	0.1M	26.3Mb	94.5%	0.1M	0.0M	98.3%	1.7%	38.9
↳ L2 - filler-D0000114	0.1M	38.7Mb	94.6%	0.1M	0.0M	97.9%	2.1%	38.9
↳ L2 - NTC-D0002235	0.1M	42.5Mb	94.7%	0.1M	0.0M	98.0%	2.0%	38.9
L3	4.4M	1329.9Mb	94.1%	4.3M	0.1M	98.0%	2.0%	38.8
↳ L3 - T21-D0003169	0.2M	72.6Mb	94.0%	0.2M	0.0M	98.2%	1.8%	38.8
↳ L3 - T21-D0002994	0.1M	43.7Mb	94.3%	0.1M	0.0M	95.3%	4.7%	38.9
↳ L3 - T13-D0003573	0.2M	66.6Mb	94.3%	0.2M	0.0M	98.1%	1.9%	38.9
↳ L3 - T13-D0003273	0.1M	43.3Mb	94.2%	0.1M	0.0M	98.1%	1.9%	38.8
↳ L3 - T18-D0003095	0.2M	48.2Mb	94.2%	0.2M	0.0M	98.5%	1.5%	38.8
↳ L3 - T18-D0003137	0.1M	32.5Mb	93.8%	0.1M	0.0M	98.2%	1.8%	38.8
↳ L3 - LOW_FF-D0001384	0.5M	141.4Mb	94.1%	0.5M	0.0M	97.9%	2.1%	38.8
↳ L3 - filler-D0000674	0.1M	32.5Mb	94.0%	0.1M	0.0M	98.3%	1.7%	38.8
↳ L3 - filler-D0001217	0.0M	0.0Mb		0.0M	0.0M
↳ L3 - filler-D0002607	0.1M	35.4Mb	93.9%	0.1M	0.0M	98.3%	1.7%	38.8
↳ L3 - filler-D0000548	0.1M	35.3Mb	93.9%	0.1M	0.0M	98.0%	2.0%	38.8
↳ L3 - filler-D0002606	0.1M	39.5Mb	94.0%	0.1M	0.0M	98.1%	1.9%	38.8
↳ L3 - filler-D0000668	0.1M	28.1Mb	93.6%	0.1M	0.0M	98.1%	1.9%	38.7
↳ L3 - filler-D0001376	0.1M	27.3Mb	94.1%	0.1M	0.0M	97.8%	2.2%	38.8
↳ L3 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L3 - filler-D0001776	0.1M	33.9Mb	94.1%	0.1M	0.0M	98.5%	1.5%	38.8
↳ L3 - filler-D0001324	0.1M	40.4Mb	94.2%	0.1M	0.0M	98.6%	1.4%	38.8
↳ L3 - filler-D0002686	0.1M	34.9Mb	94.0%	0.1M	0.0M	98.7%	1.3%	38.8
↳ L3 - filler-D0000644	0.1M	38.2Mb	94.1%	0.1M	0.0M	98.1%	1.9%	38.8
↳ L3 - filler-D0001021	0.1M	36.8Mb	94.0%	0.1M	0.0M	97.5%	2.5%	38.8
↳ L3 - filler-D0002199	0.2M	48.8Mb	94.2%	0.2M	0.0M	97.9%	2.1%	38.8
↳ L3 - filler-D0001310	0.2M	46.2Mb	94.3%	0.2M	0.0M	97.9%	2.1%	38.8
↳ L3 - filler-D0002285	0.1M	25.4Mb	93.9%	0.1M	0.0M	97.8%	2.2%	38.8
↳ L3 - filler-D0000822	0.1M	44.1Mb	94.2%	0.1M	0.0M	98.3%	1.7%	38.8
↳ L3 - filler-D0002735	0.2M	57.2Mb	94.2%	0.2M	0.0M	98.1%	1.9%	38.8
↳ L3 - T21-D0002837	0.2M	46.2Mb	93.8%	0.2M	0.0M	98.5%	1.5%	38.8
↳ L3 - filler-D0000192	0.2M	47.0Mb	94.3%	0.2M	0.0M	98.5%	1.5%	38.8
↳ L3 - filler-D0000329	0.1M	37.1Mb	94.2%	0.1M	0.0M	98.1%	1.9%	38.8
↳ L3 - filler-D0002463	0.1M	44.3Mb	94.2%	0.1M	0.0M	97.9%	2.1%	38.8
↳ L3 - filler-D0000555	0.1M	24.2Mb	94.1%	0.1M	0.0M	98.2%	1.8%	38.8
↳ L3 - filler-D0000114	0.1M	38.0Mb	94.1%	0.1M	0.0M	97.8%	2.2%	38.8
↳ L3 - NTC-D0002235	0.1M	40.7Mb	94.1%	0.1M	0.0M	97.7%	2.3%	38.8
L4	4.4M	1331.0Mb	94.3%	4.3M	0.1M	98.0%	2.0%	38.8
↳ L4 - T21-D0003169	0.2M	70.8Mb	94.2%	0.2M	0.0M	98.1%	1.9%	38.8
↳ L4 - T21-D0002994	0.1M	43.4Mb	94.5%	0.1M	0.0M	95.4%	4.6%	38.9
↳ L4 - T13-D0003573	0.2M	67.6Mb	94.5%	0.2M	0.0M	98.0%	2.0%	38.9
↳ L4 - T13-D0003273	0.1M	43.2Mb	94.5%	0.1M	0.0M	98.2%	1.8%	38.9
↳ L4 - T18-D0003095	0.2M	48.6Mb	94.4%	0.2M	0.0M	98.4%	1.6%	38.9
↳ L4 - T18-D0003137	0.1M	32.0Mb	94.0%	0.1M	0.0M	98.1%	1.9%	38.8
↳ L4 - LOW_FF-D0001384	0.5M	142.9Mb	94.3%	0.5M	0.0M	97.9%	2.1%	38.9
↳ L4 - filler-D0000674	0.1M	31.8Mb	94.2%	0.1M	0.0M	98.2%	1.8%	38.8
↳ L4 - filler-D0001217	0.0M	0.0Mb		0.0M	0.0M
↳ L4 - filler-D0002607	0.1M	35.2Mb	94.2%	0.1M	0.0M	98.3%	1.7%	38.8
↳ L4 - filler-D0000548	0.1M	34.8Mb	94.2%	0.1M	0.0M	97.9%	2.1%	38.8
↳ L4 - filler-D0002606	0.1M	39.1Mb	94.3%	0.1M	0.0M	98.2%	1.8%	38.8
↳ L4 - filler-D0000668	0.1M	27.8Mb	93.9%	0.1M	0.0M	98.1%	1.9%	38.8
↳ L4 - filler-D0001376	0.1M	27.6Mb	94.3%	0.1M	0.0M	98.0%	2.0%	38.8
↳ L4 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L4 - filler-D0001776	0.1M	34.0Mb	94.2%	0.1M	0.0M	98.3%	1.7%	38.8
↳ L4 - filler-D0001324	0.1M	40.7Mb	94.3%	0.1M	0.0M	98.4%	1.6%	38.8
↳ L4 - filler-D0002686	0.1M	34.7Mb	94.2%	0.1M	0.0M	98.6%	1.4%	38.8
↳ L4 - filler-D0000644	0.1M	38.1Mb	94.3%	0.1M	0.0M	98.0%	2.0%	38.8
↳ L4 - filler-D0001021	0.1M	36.7Mb	94.2%	0.1M	0.0M	97.6%	2.4%	38.8
↳ L4 - filler-D0002199	0.2M	49.4Mb	94.4%	0.2M	0.0M	97.7%	2.3%	38.9
↳ L4 - filler-D0001310	0.2M	46.2Mb	94.4%	0.2M	0.0M	97.9%	2.1%	38.9
↳ L4 - filler-D0002285	0.1M	25.7Mb	94.2%	0.1M	0.0M	97.8%	2.2%	38.8
↳ L4 - filler-D0000822	0.2M	45.5Mb	94.5%	0.1M	0.0M	98.3%	1.7%	38.9
↳ L4 - filler-D0002735	0.2M	56.2Mb	94.4%	0.2M	0.0M	98.2%	1.8%	38.9
↳ L4 - T21-D0002837	0.2M	46.3Mb	94.1%	0.2M	0.0M	98.4%	1.6%	38.8
↳ L4 - filler-D0000192	0.2M	48.0Mb	94.5%	0.2M	0.0M	98.4%	1.6%	38.9
↳ L4 - filler-D0000329	0.1M	38.2Mb	94.5%	0.1M	0.0M	98.2%	1.8%	38.9
↳ L4 - filler-D0002463	0.1M	43.5Mb	94.4%	0.1M	0.0M	98.0%	2.0%	38.9
↳ L4 - filler-D0000555	0.1M	24.7Mb	94.3%	0.1M	0.0M	98.1%	1.9%	38.8
↳ L4 - filler-D0000114	0.1M	37.7Mb	94.3%	0.1M	0.0M	97.6%	2.4%	38.8
↳ L4 - NTC-D0002235	0.1M	40.6Mb	94.3%	0.1M	0.0M	97.8%	2.2%	38.9
L5	4.5M	1352.0Mb	94.8%	4.4M	0.1M	98.3%	1.7%	38.9
↳ L5 - T21-D0003169	0.2M	73.4Mb	94.7%	0.2M	0.0M	98.4%	1.6%	38.9
↳ L5 - T21-D0002994	0.1M	44.6Mb	95.0%	0.1M	0.0M	95.7%	4.3%	39.0
↳ L5 - T13-D0003573	0.2M	67.2Mb	95.1%	0.2M	0.0M	98.4%	1.6%	39.0
↳ L5 - T13-D0003273	0.1M	44.0Mb	94.9%	0.1M	0.0M	98.3%	1.7%	39.0
↳ L5 - T18-D0003095	0.2M	49.9Mb	94.8%	0.2M	0.0M	98.7%	1.3%	39.0
↳ L5 - T18-D0003137	0.1M	33.4Mb	94.6%	0.1M	0.0M	98.4%	1.6%	38.9
↳ L5 - LOW_FF-D0001384	0.5M	145.7Mb	94.8%	0.5M	0.0M	98.2%	1.8%	39.0
↳ L5 - filler-D0000674	0.1M	32.7Mb	94.6%	0.1M	0.0M	98.5%	1.5%	38.9
↳ L5 - filler-D0001217	0.0M	0.0Mb		0.0M	0.0M
↳ L5 - filler-D0002607	0.1M	35.8Mb	94.6%	0.1M	0.0M	98.5%	1.5%	38.9
↳ L5 - filler-D0000548	0.1M	36.0Mb	94.6%	0.1M	0.0M	98.2%	1.8%	38.9
↳ L5 - filler-D0002606	0.1M	40.0Mb	94.7%	0.1M	0.0M	98.3%	1.7%	38.9
↳ L5 - filler-D0000668	0.1M	28.3Mb	94.3%	0.1M	0.0M	98.4%	1.6%	38.8
↳ L5 - filler-D0001376	0.1M	28.3Mb	94.7%	0.1M	0.0M	98.2%	1.8%	38.9
↳ L5 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L5 - filler-D0001776	0.1M	33.9Mb	94.7%	0.1M	0.0M	98.6%	1.4%	38.9
↳ L5 - filler-D0001324	0.1M	40.0Mb	94.8%	0.1M	0.0M	98.8%	1.2%	39.0
↳ L5 - filler-D0002686	0.1M	34.9Mb	94.8%	0.1M	0.0M	98.9%	1.1%	38.9
↳ L5 - filler-D0000644	0.1M	38.2Mb	94.8%	0.1M	0.0M	98.2%	1.8%	38.9
↳ L5 - filler-D0001021	0.1M	37.9Mb	94.7%	0.1M	0.0M	97.9%	2.1%	38.9
↳ L5 - filler-D0002199	0.2M	49.2Mb	94.9%	0.2M	0.0M	98.1%	1.9%	39.0
↳ L5 - filler-D0001310	0.2M	46.9Mb	94.9%	0.2M	0.0M	98.1%	1.9%	39.0
↳ L5 - filler-D0002285	0.1M	26.2Mb	94.7%	0.1M	0.0M	98.0%	2.0%	38.9
↳ L5 - filler-D0000822	0.2M	45.9Mb	94.9%	0.2M	0.0M	98.6%	1.4%	39.0
↳ L5 - filler-D0002735	0.2M	57.8Mb	94.8%	0.2M	0.0M	98.4%	1.6%	38.9
↳ L5 - T21-D0002837	0.2M	47.1Mb	94.5%	0.2M	0.0M	98.7%	1.3%	38.9
↳ L5 - filler-D0000192	0.2M	48.2Mb	95.0%	0.2M	0.0M	98.6%	1.4%	39.0
↳ L5 - filler-D0000329	0.1M	38.7Mb	95.0%	0.1M	0.0M	98.4%	1.6%	39.0
↳ L5 - filler-D0002463	0.1M	44.5Mb	94.9%	0.1M	0.0M	98.3%	1.7%	39.0
↳ L5 - filler-D0000555	0.1M	24.5Mb	94.7%	0.1M	0.0M	98.4%	1.6%	38.9
↳ L5 - filler-D0000114	0.1M	38.2Mb	94.8%	0.1M	0.0M	98.1%	1.9%	38.9
↳ L5 - NTC-D0002235	0.1M	40.6Mb	94.8%	0.1M	0.0M	98.0%	2.0%	39.0
L6	4.5M	1346.2Mb	94.5%	4.4M	0.1M	98.2%	1.8%	38.9
↳ L6 - T21-D0003169	0.2M	72.9Mb	94.4%	0.2M	0.0M	98.3%	1.7%	38.9
↳ L6 - T21-D0002994	0.1M	43.9Mb	94.6%	0.1M	0.0M	95.6%	4.4%	38.9
↳ L6 - T13-D0003573	0.2M	67.6Mb	94.6%	0.2M	0.0M	98.3%	1.7%	38.9
↳ L6 - T13-D0003273	0.1M	44.0Mb	94.6%	0.1M	0.0M	98.3%	1.7%	38.9
↳ L6 - T18-D0003095	0.2M	48.9Mb	94.6%	0.2M	0.0M	98.6%	1.4%	38.9
↳ L6 - T18-D0003137	0.1M	32.7Mb	94.3%	0.1M	0.0M	98.3%	1.7%	38.8
↳ L6 - LOW_FF-D0001384	0.5M	143.2Mb	94.5%	0.5M	0.0M	98.0%	2.0%	38.9
↳ L6 - filler-D0000674	0.1M	32.6Mb	94.3%	0.1M	0.0M	98.4%	1.6%	38.9
↳ L6 - filler-D0001217	0.0M	0.0Mb		0.0M	0.0M
↳ L6 - filler-D0002607	0.1M	35.8Mb	94.4%	0.1M	0.0M	98.5%	1.5%	38.9
↳ L6 - filler-D0000548	0.1M	35.6Mb	94.3%	0.1M	0.0M	98.2%	1.8%	38.8
↳ L6 - filler-D0002606	0.1M	40.4Mb	94.5%	0.1M	0.0M	98.4%	1.6%	38.9
↳ L6 - filler-D0000668	0.1M	28.8Mb	94.1%	0.1M	0.0M	98.3%	1.7%	38.8
↳ L6 - filler-D0001376	0.1M	27.8Mb	94.4%	0.1M	0.0M	98.1%	1.9%	38.9
↳ L6 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L6 - filler-D0001776	0.1M	34.1Mb	94.4%	0.1M	0.0M	98.6%	1.4%	38.9
↳ L6 - filler-D0001324	0.1M	40.7Mb	94.6%	0.1M	0.0M	98.7%	1.3%	38.9
↳ L6 - filler-D0002686	0.1M	35.3Mb	94.3%	0.1M	0.0M	98.8%	1.2%	38.8
↳ L6 - filler-D0000644	0.1M	38.3Mb	94.5%	0.1M	0.0M	98.3%	1.7%	38.9
↳ L6 - filler-D0001021	0.1M	37.3Mb	94.4%	0.1M	0.0M	97.7%	2.3%	38.9
↳ L6 - filler-D0002199	0.2M	49.7Mb	94.5%	0.2M	0.0M	98.0%	2.0%	38.9
↳ L6 - filler-D0001310	0.2M	47.1Mb	94.6%	0.2M	0.0M	98.1%	1.9%	38.9
↳ L6 - filler-D0002285	0.1M	25.9Mb	94.4%	0.1M	0.0M	98.0%	2.0%	38.9
↳ L6 - filler-D0000822	0.1M	44.4Mb	94.7%	0.1M	0.0M	98.5%	1.5%	38.9
↳ L6 - filler-D0002735	0.2M	58.3Mb	94.5%	0.2M	0.0M	98.4%	1.6%	38.9
↳ L6 - T21-D0002837	0.2M	46.5Mb	94.3%	0.2M	0.0M	98.6%	1.4%	38.8
↳ L6 - filler-D0000192	0.2M	47.8Mb	94.6%	0.2M	0.0M	98.6%	1.4%	38.9
↳ L6 - filler-D0000329	0.1M	37.3Mb	94.6%	0.1M	0.0M	98.3%	1.7%	38.9
↳ L6 - filler-D0002463	0.1M	44.8Mb	94.6%	0.1M	0.0M	98.2%	1.8%	38.9
↳ L6 - filler-D0000555	0.1M	24.9Mb	94.4%	0.1M	0.0M	98.3%	1.7%	38.9
↳ L6 - filler-D0000114	0.1M	38.3Mb	94.5%	0.1M	0.0M	98.0%	2.0%	38.9
↳ L6 - NTC-D0002235	0.1M	41.5Mb	94.5%	0.1M	0.0M	98.0%	2.0%	38.9
L7	4.6M	1376.8Mb	94.9%	4.5M	0.1M	98.3%	1.7%	39.0
↳ L7 - T21-D0003169	0.2M	74.4Mb	94.9%	0.2M	0.0M	98.4%	1.6%	39.0
↳ L7 - T21-D0002994	0.2M	45.0Mb	95.1%	0.1M	0.0M	96.4%	3.6%	39.0
↳ L7 - T13-D0003573	0.2M	68.6Mb	95.1%	0.2M	0.0M	98.3%	1.7%	39.0
↳ L7 - T13-D0003273	0.1M	44.9Mb	95.1%	0.1M	0.0M	98.4%	1.6%	39.0
↳ L7 - T18-D0003095	0.2M	49.9Mb	95.0%	0.2M	0.0M	98.6%	1.4%	39.0
↳ L7 - T18-D0003137	0.1M	33.8Mb	94.7%	0.1M	0.0M	98.4%	1.6%	38.9
↳ L7 - LOW_FF-D0001384	0.5M	145.0Mb	95.0%	0.5M	0.0M	98.1%	1.9%	39.0
↳ L7 - filler-D0000674	0.1M	33.6Mb	94.8%	0.1M	0.0M	98.5%	1.5%	38.9
↳ L7 - filler-D0001217	0.0M	0.0Mb		0.0M	0.0M
↳ L7 - filler-D0002607	0.1M	36.6Mb	94.8%	0.1M	0.0M	98.5%	1.5%	38.9
↳ L7 - filler-D0000548	0.1M	36.7Mb	94.7%	0.1M	0.0M	98.2%	1.8%	38.9
↳ L7 - filler-D0002606	0.1M	41.0Mb	94.9%	0.1M	0.0M	98.4%	1.6%	39.0
↳ L7 - filler-D0000668	0.1M	29.3Mb	94.5%	0.1M	0.0M	98.4%	1.6%	38.9
↳ L7 - filler-D0001376	0.1M	28.4Mb	95.0%	0.1M	0.0M	98.2%	1.8%	39.0
↳ L7 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L7 - filler-D0001776	0.1M	35.2Mb	94.8%	0.1M	0.0M	98.6%	1.4%	39.0
↳ L7 - filler-D0001324	0.1M	41.7Mb	95.0%	0.1M	0.0M	98.7%	1.3%	39.0
↳ L7 - filler-D0002686	0.1M	36.2Mb	94.9%	0.1M	0.0M	98.9%	1.1%	39.0
↳ L7 - filler-D0000644	0.1M	39.3Mb	95.0%	0.1M	0.0M	98.3%	1.7%	39.0
↳ L7 - filler-D0001021	0.1M	38.5Mb	94.9%	0.1M	0.0M	97.8%	2.2%	39.0
↳ L7 - filler-D0002199	0.2M	50.7Mb	95.0%	0.2M	0.0M	98.1%	1.9%	39.0
↳ L7 - filler-D0001310	0.2M	47.8Mb	95.0%	0.2M	0.0M	98.1%	1.9%	39.0
↳ L7 - filler-D0002285	0.1M	26.6Mb	94.9%	0.1M	0.0M	98.1%	1.9%	39.0
↳ L7 - filler-D0000822	0.2M	45.7Mb	95.1%	0.1M	0.0M	98.5%	1.5%	39.0
↳ L7 - filler-D0002735	0.2M	59.6Mb	95.0%	0.2M	0.0M	98.4%	1.6%	39.0
↳ L7 - T21-D0002837	0.2M	47.9Mb	94.7%	0.2M	0.0M	98.6%	1.4%	38.9
↳ L7 - filler-D0000192	0.2M	48.9Mb	95.1%	0.2M	0.0M	98.5%	1.5%	39.0
↳ L7 - filler-D0000329	0.1M	38.3Mb	95.1%	0.1M	0.0M	98.3%	1.7%	39.0
↳ L7 - filler-D0002463	0.2M	46.1Mb	95.0%	0.2M	0.0M	98.2%	1.8%	39.0
↳ L7 - filler-D0000555	0.1M	25.3Mb	94.9%	0.1M	0.0M	98.4%	1.6%	39.0
↳ L7 - filler-D0000114	0.1M	39.2Mb	95.0%	0.1M	0.0M	98.1%	1.9%	39.0
↳ L7 - NTC-D0002235	0.1M	42.7Mb	95.0%	0.1M	0.0M	98.1%	1.9%	39.0
L8	4.7M	1413.9Mb	95.3%	4.6M	0.1M	98.3%	1.7%	39.1
↳ L8 - T21-D0003169	0.3M	75.8Mb	95.2%	0.2M	0.0M	98.3%	1.7%	39.0
↳ L8 - T21-D0002994	0.2M	45.9Mb	95.5%	0.1M	0.0M	96.5%	3.5%	39.1
↳ L8 - T13-D0003573	0.2M	70.0Mb	95.6%	0.2M	0.0M	98.4%	1.6%	39.1
↳ L8 - T13-D0003273	0.2M	46.2Mb	95.5%	0.2M	0.0M	98.4%	1.6%	39.1
↳ L8 - T18-D0003095	0.2M	51.2Mb	95.4%	0.2M	0.0M	98.7%	1.3%	39.1
↳ L8 - T18-D0003137	0.1M	35.5Mb	95.1%	0.1M	0.0M	98.4%	1.6%	39.0
↳ L8 - LOW_FF-D0001384	0.5M	147.4Mb	95.4%	0.5M	0.0M	98.1%	1.9%	39.1
↳ L8 - filler-D0000674	0.1M	34.8Mb	95.2%	0.1M	0.0M	98.4%	1.6%	39.0
↳ L8 - filler-D0001217	0.0M	0.0Mb		0.0M	0.0M
↳ L8 - filler-D0002607	0.1M	37.7Mb	95.2%	0.1M	0.0M	98.5%	1.5%	39.0
↳ L8 - filler-D0000548	0.1M	37.9Mb	95.0%	0.1M	0.0M	98.2%	1.8%	39.0
↳ L8 - filler-D0002606	0.1M	42.0Mb	95.3%	0.1M	0.0M	98.5%	1.5%	39.0
↳ L8 - filler-D0000668	0.1M	30.4Mb	94.9%	0.1M	0.0M	98.4%	1.6%	39.0
↳ L8 - filler-D0001376	0.1M	29.3Mb	95.3%	0.1M	0.0M	98.2%	1.8%	39.1
↳ L8 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L8 - filler-D0001776	0.1M	36.4Mb	95.2%	0.1M	0.0M	98.5%	1.5%	39.0
↳ L8 - filler-D0001324	0.1M	42.8Mb	95.4%	0.1M	0.0M	98.7%	1.3%	39.1
↳ L8 - filler-D0002686	0.1M	37.2Mb	95.3%	0.1M	0.0M	98.8%	1.2%	39.0
↳ L8 - filler-D0000644	0.1M	40.7Mb	95.4%	0.1M	0.0M	98.4%	1.6%	39.1
↳ L8 - filler-D0001021	0.1M	39.8Mb	95.3%	0.1M	0.0M	97.9%	2.1%	39.1
↳ L8 - filler-D0002199	0.2M	51.3Mb	95.4%	0.2M	0.0M	98.2%	1.8%	39.1
↳ L8 - filler-D0001310	0.2M	48.9Mb	95.4%	0.2M	0.0M	98.2%	1.8%	39.1
↳ L8 - filler-D0002285	0.1M	27.6Mb	95.2%	0.1M	0.0M	98.0%	2.0%	39.0
↳ L8 - filler-D0000822	0.2M	47.4Mb	95.4%	0.2M	0.0M	98.5%	1.5%	39.1
↳ L8 - filler-D0002735	0.2M	62.0Mb	95.4%	0.2M	0.0M	98.5%	1.5%	39.1
↳ L8 - T21-D0002837	0.2M	49.3Mb	95.1%	0.2M	0.0M	98.7%	1.3%	39.0
↳ L8 - filler-D0000192	0.2M	50.8Mb	95.4%	0.2M	0.0M	98.6%	1.4%	39.1
↳ L8 - filler-D0000329	0.1M	39.5Mb	95.5%	0.1M	0.0M	98.2%	1.8%	39.1
↳ L8 - filler-D0002463	0.2M	46.8Mb	95.5%	0.2M	0.0M	98.2%	1.8%	39.1
↳ L8 - filler-D0000555	0.1M	26.7Mb	95.2%	0.1M	0.0M	98.4%	1.6%	39.0
↳ L8 - filler-D0000114	0.1M	39.4Mb	95.3%	0.1M	0.0M	98.0%	2.0%	39.1
↳ L8 - NTC-D0002235	0.1M	43.5Mb	95.4%	0.1M	0.0M	98.2%	1.8%	39.1

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: bclconvert-lane-stats-table_table

Sort	Column	Description	ID	Scale
\|\|	Clusters	Total number of clusters (read pairs) for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert_lane-clusters`	read_count
\|\|	Yield	Total number of bases for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert_lane-yield`	base_count
\|\|	Bases ≥ Q30 (PF)	Percent of bases with a Phred score of 30 or higher, passing filter	`bclconvert_lane-percent_yield_q30`
\|\|	Perfect index	Reads with perfect index - 0 mismatches (millions)	`bclconvert_lane-perfect_index_reads`	read_count
\|\|	One mismatch	Reads with one mismatch index (millions)	`bclconvert_lane-one_mismatch_index_reads`	read_count
\|\|	Perfect index	Percent of reads with perfect index - 0 mismatches	`bclconvert_lane-percent_perfect_index_reads`
\|\|	One mismatch	Percent of reads with one mismatch	`bclconvert_lane-percent_one_mismatch_index_reads`
\|\|	Mean quality score	Mean quality score of bases	`bclconvert_lane-mean_quality`

Clusters by lane

Number of reads per lane (with number of perfect index reads).

Warning: Found multiple runs from the same sequencer output. Runs were merged and Undetermined Reads were recalculated.

Perfect index reads are those that do not have a single mismatch. All samples of a lane are combined. Undetermined reads are treated as a third category.

Created with MultiQC

Clusters by sample

Number of reads per sample.

Perfect index reads are those that do not have a single mismatch. All samples are aggregated across lanes combined. Undetermined reads are ignored. Undetermined reads are treated as a separate sample.

Created with MultiQC

Undetermined barcodes

Top 40 undetermined barcodes

Created with MultiQC

Software Versions

Software Versions lists versions of software tools extracted from file contents.

Group	Software	Version
Sambamba	Sambamba	`1.0.1`
Samtools	HTSlib	`1.23`
	Samtools	`1.21`
UMI-tools	UMI-tools	`1.1.5`
fastp	fastp	`1.0.1`

20250818_LH00166_0162_A233WJNLT3 DAQ-UMI Report

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20250818_LH00166_0162_A233WJNLT3 DAQ-UMI Report

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