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Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume c073ade5-5014-46d7-8f91-7def6537ee03 -name daq-umi-smoke-test4
Error Report
Error executing process > 'DAQ_UMI:BAM_POSTDEDUP_QC:SENTIEON_MULTIPLE_METRICS (fetal_AF_5)'
Caused by:
Process `DAQ_UMI:BAM_POSTDEDUP_QC:SENTIEON_MULTIPLE_METRICS (fetal_AF_5)` terminated with an error exit status (1)
Command executed:
sentieon driver \
-t 31 \
-r Homo_sapiens_assembly38.fasta \
-i fetal_AF_5.dedup.bam \
\
--algo AlignmentStat fetal_AF_5.sentieon.alignment_summary_metrics \
--algo InsertSizeMetricAlgo fetal_AF_5.sentieon.insert_size_metrics \
--algo QualDistribution fetal_AF_5.sentieon.quality_distribution_metrics \
--algo BaseDistributionByCycle fetal_AF_5.sentieon.base_distribution_by_cycle_metrics \
--algo MeanQualityByCycle fetal_AF_5.sentieon.quality_by_cycle_metrics
sentieon plot InsertSizeMetricAlgo \
-o fetal_AF_5.sentieon.insert_size_histogram.pdf \
fetal_AF_5.sentieon.insert_size_metrics
cat <<-END_VERSIONS > versions.yml
"DAQ_UMI:BAM_POSTDEDUP_QC:SENTIEON_MULTIPLE_METRICS":
sentieon: $(echo $(sentieon driver --version 2>&1) | sed -e "s/sentieon-genomics-//g")
END_VERSIONS
Command exit status:
1
Command output:
(empty)
Command error:
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i fetal_AF_5.dedup.bam --algo AlignmentStat fetal_AF_5.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo fetal_AF_5.sentieon.insert_size_metrics --algo QualDistribution fetal_AF_5.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle fetal_AF_5.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle fetal_AF_5.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
Error: There is no readgroup (@RG) in BAM file fetal_AF_5.dedup.bam
Error: Invalid input BAM files
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/caec938b5954af6665675b1f664de2
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/markduplicates_sentieon:202308.03-1
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- c073ade5-5014-46d7-8f91-7def6537ee03
- Source
- /code/main.nf
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Submitted By
- pgrauman
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $8.07
- Outputs
- 16.7 GB
- Started
- Feb 05, 2026 9:37 AM
- Completed
- Feb 05, 2026 9:53 AM
- Duration
- 15m 48s
- Post-workflow Transfer
- 1s
- Exit Status
- 1
- Peak Tasks / CPU / Mem
- 64 / 1,984 / 7.8 TB