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Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume 6e324e98-0437-431d-8075-f4d8c2695e52 -name daq-wgs24-benchmark-1
Error Report
Error executing process > 'DAQ:CAT_FASTQ (1060_BM-T1-GTDNA-1_WGS)'
Caused by:
Process `DAQ:CAT_FASTQ (1060_BM-T1-GTDNA-1_WGS)` terminated with an error exit status (143)
Command executed:
cat 1060_BM-T1-GTDNA-1_WGS_S3_L001_R1_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L002_R1_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L006_R1_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L005_R1_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L007_R1_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L004_R1_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L003_R1_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L008_R1_001.fastq.gz > 1060_BM-T1-GTDNA-1_WGS_R1.fastq.gz
cat 1060_BM-T1-GTDNA-1_WGS_S3_L001_R2_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L002_R2_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L006_R2_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L005_R2_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L007_R2_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L004_R2_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L003_R2_001.fastq.gz 1060_BM-T1-GTDNA-1_WGS_S3_L008_R2_001.fastq.gz > 1060_BM-T1-GTDNA-1_WGS_R2.fastq.gz
cat <<-END_VERSIONS > versions.yml
"DAQ:CAT_FASTQ":
cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS
Command exit status:
143
Command output:
(empty)
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/6e2033d2ff3e5676c4d238200029ae
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/cat_fastq:1.2
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- 6e324e98-0437-431d-8075-f4d8c2695e52
- Source
- /app/main.nf
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Output Dir
- Deleted on 2026-05-29 12:04 PM. List of old outputs
- Submitted By
- abshah
- Resumed
- No
Cost and Runtime
- Status
- failed
- Outputs
- Deleted
- Started
- Jan 08, 2026 1:16 PM
- Completed
- Jan 08, 2026 2:01 PM
- Duration
- 44m 33s
- Post-workflow Transfer
- 10s
- Exit Status
- 143
- Peak Tasks / CPU / Mem
- 216 / 954 / 3.5 TB