File Info

Filename
NTC_0001_0001_23KMKGLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/star_alignment/NTC_0001_0001_23KMKGLT4_1.Log.final.out
Size
2.0 KB
Published
May 16, 2026 1:20 AM
                                 Started job on |	May 16 08:17:07
                             Started mapping on |	May 16 08:19:16
                                    Finished on |	May 16 08:20:02
       Mapping speed, Million of reads per hour |	39.30

                          Number of input reads |	502222
                      Average input read length |	90
                                    UNIQUE READS:
                   Uniquely mapped reads number |	56983
                        Uniquely mapped reads % |	11.35%
                          Average mapped length |	67.76
                       Number of splices: Total |	459
            Number of splices: Annotated (sjdb) |	10
                       Number of splices: GT/AG |	365
                       Number of splices: GC/AG |	94
                       Number of splices: AT/AC |	0
               Number of splices: Non-canonical |	0
                      Mismatch rate per base, % |	2.10%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.25
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	294678
             % of reads mapped to multiple loci |	58.67%
        Number of reads mapped to too many loci |	10622
             % of reads mapped to too many loci |	2.12%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	4317
       % of reads unmapped: too many mismatches |	0.86%
            Number of reads unmapped: too short |	105008
                 % of reads unmapped: too short |	20.91%
                Number of reads unmapped: other |	1236
                     % of reads unmapped: other |	0.25%
                                  CHIMERIC READS:
                       Number of chimeric reads |	68520
                            % of chimeric reads |	13.64%