File Info

Filename
tih_rna_sample_00153_23KMKGLT4_1.fastp.log
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/fastp/tih_rna_sample_00153_23KMKGLT4_1.fastp.log
Size
1.6 KB
Workflow Run
dev_rna_exp0001R_2cae617
Published
May 16, 2026 1:22 AM

Content

View in new tab 
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 159603286
total bases: 24100096186
Q20 bases: 23380991275(97.0162%)
Q30 bases: 22162077521(91.9585%)

Read2 before filtering:
total reads: 159603286
total bases: 24100096186
Q20 bases: 23541681848(97.6829%)
Q30 bases: 22403424035(92.9599%)

Read1 after filtering:
total reads: 157258913
total bases: 16675900154
Q20 bases: 16601627989(99.5546%)
Q30 bases: 16262510168(97.521%)

Read2 after filtering:
total reads: 157258913
total bases: 16696751825
Q20 bases: 16581197117(99.3079%)
Q30 bases: 16191685111(96.9751%)

Filtering result:
reads passed filter: 314517826
reads failed due to low quality: 3491286
reads failed due to too many N: 46242
reads failed due to too short: 1151218
reads with adapter trimmed: 281858217
bases trimmed due to adapters: 14238011864

Duplication rate: 42.9587%

Insert size peak (evaluated by paired-end reads): 98

JSON report: tih_rna_sample_00153_23KMKGLT4_1.fastp.json
HTML report: tih_rna_sample_00153_23KMKGLT4_1.fastp.html

fastp --in1 tih_rna_sample_00153_23KMKGLT4_1_1.fastq.gz --in2 tih_rna_sample_00153_23KMKGLT4_1_2.fastq.gz --out1 tih_rna_sample_00153_23KMKGLT4_1_1.fastp.fastq.gz --out2 tih_rna_sample_00153_23KMKGLT4_1_2.fastp.fastq.gz --json tih_rna_sample_00153_23KMKGLT4_1.fastp.json --html tih_rna_sample_00153_23KMKGLT4_1.fastp.html --thread 12 --detect_adapter_for_pe --reads_to_process 300000000 
fastp v0.23.4, time used: 388 seconds