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Filename
NTC_0001_0001_23KMKGLT4_1_collectinsertsize.txt
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/picard/NTC_0001_0001_23KMKGLT4_1_collectinsertsize.txt
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1.9 KB
Published
May 16, 2026 1:22 AM
## htsjdk.samtools.metrics.StringHeader
# CollectInsertSizeMetrics --Histogram_FILE NTC_0001_0001_23KMKGLT4_1_collectinsertsize.pdf --INPUT NTC_0001_0001_23KMKGLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT NTC_0001_0001_23KMKGLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sat May 16 08:21:07 GMT 2026

## METRICS CLASS	picard.analysis.InsertSizeMetrics
MEDIAN_INSERT_SIZE	MODE_INSERT_SIZE	MEDIAN_ABSOLUTE_DEVIATION	MIN_INSERT_SIZE	MAX_INSERT_SIZE	MEAN_INSERT_SIZE	STANDARD_DEVIATION	READ_PAIRS	PAIR_ORIENTATION	WIDTH_OF_10_PERCENT	WIDTH_OF_20_PERCENT	WIDTH_OF_30_PERCENT	WIDTH_OF_40_PERCENT	WIDTH_OF_50_PERCENT	WIDTH_OF_60_PERCENT	WIDTH_OF_70_PERCENT	WIDTH_OF_80_PERCENT	WIDTH_OF_90_PERCENT	WIDTH_OF_95_PERCENT	WIDTH_OF_99_PERCENT	SAMPLE	LIBRARY	READ_GROUP
26	32	6	9	159188	26.371839	9.821218	414629	FR	5	7	9	11	13	15	17	19	23	67	183			

## HISTOGRAM	java.lang.Integer
insert_size	All_Reads.fr_count
9	1
12	29
13	18
14	2632
15	10948
16	26325
17	23650
18	21923
19	22330
20	18368
21	22454
22	20071
23	13811
24	13454
25	9672
26	10592
27	13308
28	12680
29	15595
30	17655
31	16583
32	30102
33	26361
34	22678
35	9472
36	1942
37	1294
38	844
39	424
40	682
41	304
42	575
43	322
44	201
45	743
46	183
47	996
48	251
49	211
50	316
51	615
52	456
53	235
54	368
55	349
56	564
57	352
58	628
59	908
60	491
61	174
62	378
63	379
64	219
65	279
66	442
67	120
68	378
69	337
70	229
71	181
72	338
73	154
74	430
75	150
76	317
77	197
78	279
79	186
80	226
81	234
82	414
83	231
84	299
85	263
86	226