File Info

Filename
FFPE_V4_0001_RNA_0001_23KMKGLT4_1.starfusion.starfusion.fusion_predictions.filter_summary.txt
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/starfusion/FFPE_V4_0001_RNA_0001_23KMKGLT4_1.starfusion.starfusion.fusion_predictions.filter_summary.txt
Size
1.3 KB
Workflow Run
dev_rna_exp0001R_2cae617
Published
May 16, 2026 6:08 AM

Content

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STAR-FUSION FILTERING SUMMARY
================================================================================

Input file: FFPE_V4_0001_RNA_0001_23KMKGLT4_1.starfusion.starfusion.fusion_predictions.tsv
Blacklist: blacklist_hg38_GRCh38_v2.4.0.tsv.gz
Filter config: starfusion_filter_config.yaml
Output file: FFPE_V4_0001_RNA_0001_23KMKGLT4_1.starfusion.starfusion.fusion_predictions.filter_summary.tsv

Total fusions: 2042
Pass (CALL=1): 18 (0.9%)
Fail (CALL=0): 2024 (99.1%)

Blacklist Flagging:
  Total blacklisted: 215
  All blacklisted fusions have CALL=0

Failure Reasons:
  Read count too low: 1 < 8: 1173
  Excluded SpliceType: INCL_NON_REF_SPLICE: 541
  Blacklisted: 133
  Blacklisted; aih_curated_blacklist score(3): 51
  Read count too low: 2 < 8: 44
  Excluded annotation pattern: HGNC_GENEFAM: 29
  aih_curated_blacklist score(3): 28
  Excluded annotation pattern: DGD_PARALOGS: 6
  Read count too low: 3 < 8: 5
  Does not meet inclusion criteria: 3
  Read count too low: 5 < 8: 3
  Read count too low: 4 < 8: 3
  Excluded annotation pattern: GTEx_recurrent_StarF2019: 1
  aih_curated_blacklist score(4): 1
  aih_curated_blacklist score(6): 1
  aih_curated_blacklist score(5): 1
  Excluded annotation pattern: ConjoinG: 1

Breakdown by SpliceType:
  INCL_NON_REF_SPLICE: 0 pass, 883 fail (total: 883)
  ONLY_REF_SPLICE: 18 pass, 1141 fail (total: 1159)