#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	3431	4	3431.00	4.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	44	1821	76.36	1.89	GT	1.8892	AG	1.7819	11.6752	627	0
FGFR3--TACC3	6	2	6.00	0.00	FGFR3^ENSG00000068078.20	9874	chr4:1806930:+	TACC3^ENSG00000013810.20	27587	chr4:1739699:+	INCL_NON_REF_SPLICE	YES	94	1779	0.09	0.01	CG	1.9219	AG	1.7819	0.0204	632	0
TMPRSS2--ERG	2964	0	2964.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	2	37	988.33	78.03	GT	1.6895	AG	1.9219	10.0743	1104	0
TPM3--NTRK1	1023	5	1023.00	4.99	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	5473	13	0.19	73.50	GT	1.9329	AG	1.6895	3.4941	355	0
TPM3--NTRK1	3	5	3.00	0.01	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42079	chr1:156874580:+	INCL_NON_REF_SPLICE	YES	5473	26	0.00	0.33	GT	1.9329	CA	1.9329	0.0102	364	0
ETV6--NTRK3	978	1	978.00	1.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	1732	10	0.57	89.09	GT	1.7819	AG	1.9656	3.3275	1252	0
FGFR3--BAIAP2L1	906	1	906.00	1.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	45	32	19.74	27.52	GT	1.8892	AG	1.8062	3.0828	1171	0
FGFR3--BAIAP2L1	4	1	4.00	0.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16962	chr7:98362397:-	INCL_NON_REF_SPLICE	YES	45	55	0.13	0.11	GT	1.8892	AA	1.9086	0.0136	1137	0
LMNA--NTRK1	889	12	889.00	12.00	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	2591	192	0.35	4.67	GT	1.7465	AG	1.5058	3.0624	947	0
NCOA4--RET	781	0	781.00	0.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	1747	216	0.45	3.60	GT	1.9086	AG	1.8323	2.6545	5144	0
CCDC6--RET	685	1	685.00	0.99	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	1364	216	0.50	3.17	GT	1.8892	AG	1.8323	2.3316	2092	0
CCDC6--RET	6	1	6.00	0.01	CCDC6^ENSG00000108091.11	1441	chr10:59906116:-	RET^ENSG00000165731.20	31594	chr10:43116591:+	INCL_NON_REF_SPLICE	YES	1350	248	0.01	0.03	GC	1.9656	TC	1.9656	0.0204	2099	0
KIF5B--RET	640	5	640.00	5.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	1036	12	0.62	49.69	GT	1.9656	AG	1.9656	2.1923	3178	0
EML4--ALK	592	0	592.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	466	10	1.27	53.91	GT	1.6895	AG	1.9086	2.0121	1550	0
SLC34A2--ROS1	482	5	482.00	4.92	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	27	488.00	17.43	GT	1.8892	AG	1.7465	1.655	999	0
SLC34A2--ROS1	8	5	8.00	0.08	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58027	chr6:117324413:-	INCL_NON_REF_SPLICE	YES	0	36	14.00	0.38	GA	1.7465	AT	1.8892	0.0275	1001	0
CD74--ROS1	461	2	461.00	1.96	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	17825	27	0.03	16.57	GT	1.7819	AG	1.7465	1.5736	2407	0
CD74--ROS1	7	2	7.00	0.03	CD74^ENSG00000019582.16	4987	chr5:150404683:-	ROS1^ENSG00000047936.11	48729	chr6:117324417:-	INCL_NON_REF_SPLICE	NO	19237	0	0.00	10.00	AA	1.8295	TT	1.5301	0.0239	2405	0
CD74--ROS1	3	2	3.00	0.01	CD74^ENSG00000019582.16	4989	chr5:150404681:-	ROS1^ENSG00000047936.11	48779	chr6:117324367:-	INCL_NON_REF_SPLICE	YES	19163	144	0.00	0.04	GG	1.7819	TG	1.7465	0.0102	2384	0
PAX8--PPARG	370	1	370.00	1.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	53	12	6.89	28.62	GT	1.8295	AG	1.9329	1.261	1923	0
PAX8--PPARG	4	0	4.00	0.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31480	chr3:12379780:+	INCL_NON_REF_SPLICE	YES	53	27	0.09	0.18	GT	1.8295	AT	1.7819	0.0136	1923	0
TFG--NTRK1	346	4	346.00	4.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	1596	13	0.22	25.07	GT	1.9329	AG	1.6895	1.1896	883	0
EGFR--SEPTIN14	331	4	331.00	4.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	3	30	84.00	10.84	GT	1.8892	AG	1.9899	1.1386	658	0
SLC45A3--BRAF	294	0	294.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	0	925	295.00	0.32	GT	1.5628	AG	1.7465	0.9993	2599	0
TLK2--FAM157A	62	0	62.00	0.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	FAM157A^ENSG00000236438.7	45187	chr3:198180755:+	ONLY_REF_SPLICE	YES	477	41	0.13	1.50	GT	1.8892	AG	1.8892	0.2107	2733	0