#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	3293	4	3293.00	3.99	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	28	1834	113.72	1.80	GT	1.8892	AG	1.7819	11.2099	627	0
FGFR3--TACC3	5	4	5.00	0.01	FGFR3^ENSG00000068078.20	9882	chr4:1806938:+	TACC3^ENSG00000013810.20	27596	chr4:1739708:+	INCL_NON_REF_SPLICE	YES	9	1936	1.00	0.01	GT	1.8892	AG	1.5058	0.017	620	0
TMPRSS2--ERG	2415	0	2415.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	0	31	2416.00	75.50	GT	1.6895	AG	1.9219	8.211	1104	0
TPM3--NTRK1	863	0	863.00	0.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	5344	15	0.16	54.00	GT	1.9329	AG	1.6895	2.9342	355	0
LMNA--NTRK1	854	4	854.00	4.00	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	2538	175	0.34	4.88	GT	1.7465	AG	1.5058	2.9172	947	0
FGFR3--BAIAP2L1	832	0	832.00	0.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	32	27	25.24	29.75	GT	1.8892	AG	1.8062	2.8288	1171	0
FGFR3--BAIAP2L1	4	0	4.00	0.00	FGFR3^ENSG00000068078.20	9095	chr4:1806151:+	BAIAP2L1^ENSG00000006453.14	18323	chr7:98355106:-	INCL_NON_REF_SPLICE	YES	253	40	0.02	0.12	CT	1.8892	GC	1.9899	0.0136	541	0
ETV6--NTRK3	831	1	831.00	1.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	1570	7	0.53	104.12	GT	1.7819	AG	1.9656	2.8288	1252	0
NCOA4--RET	698	4	698.00	3.93	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	1668	177	0.42	3.95	GT	1.9086	AG	1.8323	2.3866	5144	0
NCOA4--RET	12	4	12.00	0.07	NCOA4^ENSG00000266412.6	9076	chr10:46012882:-	RET^ENSG00000165731.20	30129	chr10:43116586:+	INCL_NON_REF_SPLICE	YES	1661	192	0.01	0.09	TC	1.8323	GA	1.8323	0.041	5142	0
EML4--ALK	595	0	595.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	394	60	1.51	9.77	GT	1.6895	AG	1.9086	2.023	1550	0
CCDC6--RET	579	0	579.00	0.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	1260	177	0.46	3.26	GT	1.8892	AG	1.8323	1.9686	2092	0
SLC34A2--ROS1	566	6	566.00	5.98	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	27	573.00	20.46	GT	1.8892	AG	1.7465	1.9447	999	0
SLC34A2--ROS1	4	2	4.00	0.01	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58030	chr6:117324410:-	INCL_NON_REF_SPLICE	YES	0	44	7.00	0.16	GA	1.7465	AT	1.9086	0.0136	1004	0
SLC34A2--ROS1	3	2	3.00	0.01	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58028	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	0	39	6.00	0.15	GA	1.7465	TG	1.8892	0.0102	1002	0
KIF5B--RET	518	3	518.00	2.95	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	990	8	0.53	58.00	GT	1.9656	AG	1.9656	1.7712	3178	0
KIF5B--RET	7	0	7.00	0.00	KIF5B^ENSG00000170759.11	19876	chr10:32017244:-	RET^ENSG00000165731.20	38956	chr10:43114604:+	INCL_NON_REF_SPLICE	YES	1321	127	0.01	0.06	TG	1.3753	CC	1.8892	0.0238	3222	0
KIF5B--RET	6	3	6.00	0.03	KIF5B^ENSG00000170759.11	19970	chr10:32017150:-	RET^ENSG00000165731.20	38827	chr10:43114475:+	INCL_NON_REF_SPLICE	YES	1032	1	0.01	5.00	CA	1.9656	CC	1.9656	0.0205	3187	0
KIF5B--RET	3	3	3.00	0.02	KIF5B^ENSG00000170759.11	19975	chr10:32017145:-	RET^ENSG00000165731.20	38862	chr10:43114510:+	INCL_NON_REF_SPLICE	NO	1013	49	0.01	0.14	TG	1.9899	GG	1.9086	0.0103	3168	0
CD74--ROS1	499	0	499.00	0.00	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	18733	28	0.03	17.24	GT	1.7819	AG	1.7465	1.6966	2407	0
CD74--ROS1	7	0	7.00	0.00	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48732	chr6:117324414:-	INCL_NON_REF_SPLICE	YES	18742	29	0.00	0.27	AC	1.9329	GA	1.8295	0.0238	2408	0
TFG--NTRK1	289	1	289.00	1.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	1257	15	0.23	18.19	GT	1.9329	AG	1.6895	0.986	883	0
PAX8--PPARG	266	0	266.00	0.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	37	9	7.03	26.70	GT	1.8295	AG	1.9329	0.9044	1923	0
SLC45A3--BRAF	240	0	240.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	3	937	60.25	0.26	GT	1.5628	AG	1.7465	0.816	2599	0
EGFR--SEPTIN14	239	1	239.00	1.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	9	24	24.10	9.64	GT	1.8892	AG	1.9899	0.816	658	0
STX16--NPEPL1	161	0	161.00	0.00	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	916	148	0.18	1.09	GT	1.7968	AG	1.8256	0.5474	1940	0
STX16--NPEPL1	5	0	5.00	0.00	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	983	148	0.01	0.04	GT	1.8062	AG	1.8256	0.017	2729	0
STX16--NPEPL1	1	0	1.00	0.00	STX16^ENSG00000124222.22	1835	chr20:58652087:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1459	148	0.00	0.01	GT	1.9899	AG	1.8256	0.0034	1258	0
STX16--NPEPL1	1	0	1.00	0.00	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	21146	chr20:58698684:+	ONLY_REF_SPLICE	YES	916	481	0.00	0.00	GT	1.7968	AG	1.9899	0.0034	2583	0
TLK2--AC240565.1	65	0	65.00	0.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	AC240565.1^ENSG00000280136.2	41242	chr17:106864:-	ONLY_REF_SPLICE	YES	399	39	0.17	1.65	GT	1.8892	AG	1.8892	0.221	1734	0