File Info

Filename
FFPE_V4_0001_RNA_0001_23KMKGLT4_1.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_V4_0001_RNA_0001_23KMKGLT4_1.FusionInspector.fusions.abridged.tsv
Size
7.8 KB
Workflow Run
dev_rna_exp0001R_2cae617
Published
May 16, 2026 7:29 AM

Content

View in new tab
#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 5661 15 5661.00 14.94 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 92 3292 61.04 1.72 GT 1.8892 AG 1.7819 19.1984 627 0
FGFR3--TACC3 8 15 8.00 0.02 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 8 3405 2.67 0.01 GA 1.8892 TA 1.5219 0.0272 623 0
FGFR3--TACC3 5 14 5.00 0.01 FGFR3^ENSG00000068078.20 9872 chr4:1806928:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 335 3201 0.06 0.01 AC 1.8892 AG 1.7819 0.0169 633 0
FGFR3--TACC3 4 13 4.00 0.01 FGFR3^ENSG00000068078.20 9882 chr4:1806938:+ TACC3^ENSG00000013810.20 27596 chr4:1739708:+ INCL_NON_REF_SPLICE YES 8 3578 2.00 0.01 GT 1.8892 AG 1.5058 0.0135 620 0
FGFR3--TACC3 3 15 3.00 0.01 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27591 chr4:1739703:+ INCL_NON_REF_SPLICE YES 8 3385 2.11 0.01 GA 1.8892 GG 1.7819 0.0101 625 0
FGFR3--TACC3 3 12 3.00 0.01 FGFR3^ENSG00000068078.20 9859 chr4:1806915:+ TACC3^ENSG00000013810.20 27591 chr4:1739703:+ INCL_NON_REF_SPLICE NO 496 3385 0.03 0.00 TA 1.8062 GG 1.7819 0.0101 636 0
FGFR3--TACC3 3 0 3.00 0.00 FGFR3^ENSG00000068078.20 9533 chr4:1806589:+ TACC3^ENSG00000013810.20 27620 chr4:1739732:+ INCL_NON_REF_SPLICE YES 1923 3886 0.00 0.00 GC 1.8062 AG 1.8295 0.0101 469 0
TMPRSS2--ERG 4428 0 4428.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 22 133 192.57 33.05 GT 1.6895 AG 1.9219 14.9774 1104 0
TMPRSS2--ERG 8 0 8.00 0.00 TMPRSS2^ENSG00000184012.14 4654 chr21:41508079:- ERG^ENSG00000157554.19 28759 chr21:38584937:- INCL_NON_REF_SPLICE YES 0 219 9.00 0.04 GA 1.7232 CC 1.9329 0.0271 1112 0
TMPRSS2--ERG 5 0 5.00 0.00 TMPRSS2^ENSG00000184012.14 4653 chr21:41508080:- ERG^ENSG00000157554.19 28753 chr21:38584943:- INCL_NON_REF_SPLICE YES 14 148 0.40 0.04 TG 1.6402 GT 1.8295 0.0169 1106 0
ETV6--NTRK3 1635 0 1635.00 0.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 3083 31 0.53 51.12 GT 1.7819 AG 1.9656 5.5303 1252 0
FGFR3--BAIAP2L1 1557 4 1557.00 4.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 96 60 16.10 25.61 GT 1.8892 AG 1.8062 5.2799 1171 0
LMNA--NTRK1 1536 11 1536.00 11.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 4719 403 0.33 3.83 GT 1.7465 AG 1.5058 5.2326 947 0
LMNA--NTRK1 3 0 3.00 0.00 LMNA^ENSG00000160789.23 17703 chr1:156130743:+ NTRK1^ENSG00000198400.13 40944 chr1:156875561:+ INCL_NON_REF_SPLICE YES 4996 1621 0.00 0.00 CT 1.6729 CC 1.9329 0.0101 1299 0
TPM3--NTRK1 1348 3 1348.00 3.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 9448 35 0.14 37.56 GT 1.9329 AG 1.6895 4.5696 355 0
NCOA4--RET 1152 4 1152.00 3.99 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 3021 667 0.38 1.73 GT 1.9086 AG 1.8323 3.9101 5144 0
NCOA4--RET 3 4 3.00 0.01 NCOA4^ENSG00000266412.6 9076 chr10:46012882:- RET^ENSG00000165731.20 30129 chr10:43116586:+ INCL_NON_REF_SPLICE YES 2992 699 0.00 0.01 TC 1.8323 GA 1.8323 0.0101 5142 0
CCDC6--RET 1082 1 1082.00 1.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 2475 667 0.44 1.62 GT 1.8892 AG 1.8323 3.6632 2092 0
KIF5B--RET 924 8 924.00 8.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 1685 24 0.55 37.32 GT 1.9656 AG 1.9656 3.1525 3178 0
KIF5B--RET 6 0 6.00 0.00 KIF5B^ENSG00000170759.11 19878 chr10:32017242:- RET^ENSG00000165731.20 38977 chr10:43114625:+ INCL_NON_REF_SPLICE YES 2315 440 0.00 0.02 CA 1.5546 AC 1.6895 0.0203 3213 0
CD74--ROS1 869 9 869.00 8.77 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 34846 38 0.03 22.54 GT 1.7819 AG 1.7465 2.969 2407 0
CD74--ROS1 6 9 6.00 0.06 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 12651 chr6:117425921:- INCL_NON_REF_SPLICE NO 37941 0 0.00 16.00 GG 1.7819 TT 1.9656 0.0205 3299 0
CD74--ROS1 4 9 4.00 0.04 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48733 chr6:117324413:- INCL_NON_REF_SPLICE YES 37941 59 0.00 0.23 GG 1.7819 AT 1.8892 0.0136 2405 0
CD74--ROS1 4 6 4.00 0.03 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48734 chr6:117324412:- INCL_NON_REF_SPLICE YES 34838 71 0.00 0.15 AC 1.9329 TG 1.8892 0.0136 2407 0
CD74--ROS1 3 9 3.00 0.03 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 34838 43 0.00 0.30 AC 1.9329 GA 1.8295 0.0102 2408 0
CD74--ROS1 3 9 3.00 0.03 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 12652 chr6:117425920:- INCL_NON_REF_SPLICE NO 34846 0 0.00 13.00 GT 1.7819 TT 1.9656 0.0102 3298 0
CD74--ROS1 3 9 3.00 0.03 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE YES 34846 0 0.00 13.00 GT 1.7819 TT 1.5301 0.0102 2408 0
CD74--ROS1 3 3 3.00 0.01 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48779 chr6:117324367:- INCL_NON_REF_SPLICE YES 37941 245 0.00 0.03 GG 1.7819 TG 1.7465 0.0101 2384 0
SLC34A2--ROS1 798 20 798.00 19.95 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 37 819.00 21.55 GT 1.8892 AG 1.7465 2.7667 999 0
SLC34A2--ROS1 3 14 3.00 0.05 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58028 chr6:117324412:- INCL_NON_REF_SPLICE YES 0 71 18.00 0.25 GA 1.7465 TG 1.8892 0.0103 1002 0
EML4--ALK 740 0 740.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 647 48 1.14 15.12 GT 1.6895 AG 1.9086 2.503 1550 0
SLC45A3--BRAF 556 0 556.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 1617 557.00 0.34 GT 1.5628 AG 1.7465 1.8806 2599 0
PAX8--PPARG 513 0 513.00 0.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 102 8 4.99 57.11 GT 1.8295 AG 1.9329 1.7352 1923 0
PAX8--PPARG 4 0 4.00 0.00 PAX8^ENSG00000125618.18 9666 chr2:113235442:- PPARG^ENSG00000132170.23 31395 chr3:12379695:+ INCL_NON_REF_SPLICE YES 142 4 0.03 1.00 AT 1.6895 TT 1.9086 0.0135 1971 0
TFG--NTRK1 467 0 467.00 0.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 2150 35 0.22 13.00 GT 1.9329 AG 1.6895 1.5796 883 0
EGFR--SEPTIN14 417 2 417.00 2.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 10 28 38.18 14.48 GT 1.8892 AG 1.9899 1.4173 658 0
STX16--NPEPL1 148 1 148.00 1.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1049 144 0.14 1.03 GT 1.7968 AG 1.8256 0.504 1940 0
STX16--NPEPL1 4 0 4.00 0.00 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1155 144 0.00 0.03 GT 1.8062 AG 1.8256 0.0135 2729 0
TLK2--AC240565.1 43 0 43.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 468 39 0.09 1.10 GT 1.8892 AG 1.8892 0.1454 1734 0
40 rows