#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	3074	5	3074.00	4.99	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	112	1870	27.26	1.65	GT	1.8892	AG	1.7819	31.2591	627	0
FGFR3--TACC3	6	5	6.00	0.01	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27593	chr4:1739705:+	INCL_NON_REF_SPLICE	YES	10	1933	1.09	0.01	GA	1.8892	TA	1.5219	0.061	623	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	9555	chr4:1806611:+	TACC3^ENSG00000013810.20	27632	chr4:1739744:+	INCL_NON_REF_SPLICE	YES	1234	2218	0.00	0.00	TG	1.7232	GG	1.9656	0.0305	493	0
TMPRSS2--ERG	1596	0	1596.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	26	54	59.15	29.04	GT	1.6895	AG	1.9219	16.2032	1104	0
LMNA--NTRK1	1068	4	1068.00	4.00	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	2689	203	0.40	5.26	GT	1.7465	AG	1.5058	10.8833	947	0
FGFR3--BAIAP2L1	803	0	803.00	0.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	114	29	6.99	26.80	GT	1.8892	AG	1.8062	8.1524	1171	0
ETV6--NTRK3	568	1	568.00	1.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	1443	5	0.39	95.00	GT	1.7819	AG	1.9656	5.7768	1252	0
NCOA4--RET	536	0	536.00	0.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	1325	324	0.40	1.65	GT	1.9086	AG	1.8323	5.4417	5144	0
NCOA4--RET	3	0	3.00	0.00	NCOA4^ENSG00000266412.6	7500	chr10:46014458:-	RET^ENSG00000165731.20	30123	chr10:43116580:+	INCL_NON_REF_SPLICE	YES	937	309	0.00	0.01	CT	1.9656	AC	1.7968	0.0305	5486	0
CCDC6--RET	508	1	508.00	1.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	1080	324	0.47	1.57	GT	1.8892	AG	1.8323	5.1676	2092	0
TPM3--NTRK1	499	2	499.00	2.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	3406	22	0.15	21.83	GT	1.9329	AG	1.6895	5.0863	355	0
SLC45A3--BRAF	271	0	271.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	1	551	136.00	0.49	GT	1.5628	AG	1.7465	2.7513	2599	0
KIF5B--RET	255	2	255.00	2.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	555	13	0.46	18.43	GT	1.9656	AG	1.9656	2.6092	3178	0
PAX8--PPARG	255	0	255.00	0.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	52	6	4.83	36.57	GT	1.8295	AG	1.9329	2.5889	1923	0
CD74--ROS1	213	1	213.00	0.98	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	17580	8	0.01	23.89	GT	1.7819	AG	1.7465	2.1724	2407	0
CD74--ROS1	4	1	4.00	0.02	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48729	chr6:117324417:-	INCL_NON_REF_SPLICE	YES	17580	0	0.00	6.00	GT	1.7819	TT	1.5301	0.0408	2408	0
EML4--ALK	206	0	206.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	169	33	1.22	6.09	GT	1.6895	AG	1.9086	2.0914	1550	0
SLC34A2--ROS1	175	2	175.00	2.00	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	9	178.00	17.80	GT	1.8892	AG	1.7465	1.797	999	0
SLC34A2--ROS1	3	0	3.00	0.00	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58030	chr6:117324410:-	INCL_NON_REF_SPLICE	YES	0	18	4.00	0.21	GA	1.7465	AT	1.9086	0.0305	1004	0
EGFR--SEPTIN14	113	1	113.00	1.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	4	4	23.00	23.00	GT	1.8892	AG	1.9899	1.1574	658	0
TFG--NTRK1	105	1	105.00	1.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	460	22	0.23	4.65	GT	1.9329	AG	1.6895	1.0762	883	0
MRPS18A--ESCO1	15	0	15.00	0.00	MRPS18A^ENSG00000096080.12	1124	chr6:43687668:-	ESCO1^ENSG00000141446.11	11695	chr18:21593488:-	ONLY_REF_SPLICE	YES	554	9	0.03	1.60	GT	1.7232	AG	1.7819	0.1523	1001	0
AGAP3--HOXD11	4	0	4.00	0.00	AGAP3^ENSG00000133612.19	1978	chr7:151086808:+	HOXD11^ENSG00000128713.14	32027	chr2:176107582:+	INCL_NON_REF_SPLICE	YES	9	0	0.50	5.00	GC	1.2310	CC	0.9183	0.0406	4	37
CTNNB1--ULK4	2	0	2.00	0.00	CTNNB1^ENSG00000168036.18	3992	chr3:41199670:+	ULK4^ENSG00000168038.11	48796	chr3:41835971:-	ONLY_REF_SPLICE	YES	1318	20	0.00	0.14	GT	1.8062	AG	1.8295	0.0203	2283	0
PRRT3-AS1--CRELD1	2	0	2.00	0.00	PRRT3-AS1^ENSG00000230082.1	2066	chr3:9948469:+	CRELD1^ENSG00000163703.19	6855	chr3:9934420:+	ONLY_REF_SPLICE	YES	0	128	3.00	0.02	GT	1.9656	AG	1.7819	0.0203	68	1
SLC12A6--PTBP3	1	0	1.00	0.00	SLC12A6^ENSG00000140199.13	2651	chr15:34336410:-	PTBP3^ENSG00000119314.16	36618	chr9:112297916:-	ONLY_REF_SPLICE	YES	211	1539	0.01	0.00	GT	1.8892	AG	1.8295	0.0102	2931	0