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Filename
FFPE_V4_0001_RNA_0005_23KMKGLT4_12.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23KMKGLT4/nfcore_rnafusion_100M__5f1fa79--20260304-094520/fusioninspector/FFPE_V4_0001_RNA_0005_23KMKGLT4_12.FusionInspector.fusions.abridged.tsv
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5.1 KB
Workflow Run
dev_rna_exp0001R_5f1fa79
Published
Mar 09, 2026 12:00 PM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 482 1 482.00 0.98 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 16 1494 28.47 0.32 GT 1.8892 AG 1.7819 4.9206 627 0
FGFR3--TACC3 6 1 6.00 0.01 FGFR3^ENSG00000068078.20 9865 chr4:1806921:+ TACC3^ENSG00000013810.20 27601 chr4:1739713:+ INCL_NON_REF_SPLICE YES 57 1563 0.14 0.01 GA 1.7819 AC 1.5219 0.0612 624 0
FGFR3--TACC3 3 1 3.00 0.01 FGFR3^ENSG00000068078.20 9872 chr4:1806928:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 43 1446 0.11 0.00 AC 1.8892 AG 1.7819 0.0307 633 0
TMPRSS2--ERG 283 0 283.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 1 11 142.00 23.67 GT 1.6895 AG 1.9219 2.8832 1104 0
LMNA--NTRK1 145 4 145.00 4.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 1280 54 0.12 2.73 GT 1.7465 AG 1.5058 1.518 947 0
ETV6--NTRK3 142 0 142.00 0.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 1311 3 0.11 35.75 GT 1.7819 AG 1.9656 1.4467 1252 0
FGFR3--BAIAP2L1 142 0 142.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 17 20 7.94 6.81 GT 1.8892 AG 1.8062 1.4467 1171 0
TPM3--NTRK1 136 1 136.00 1.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 3774 3 0.04 34.50 GT 1.9329 AG 1.6895 1.3958 355 0
NCOA4--RET 100 1 100.00 1.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 1181 58 0.09 1.73 GT 1.9086 AG 1.8323 1.029 5144 0
KIF5B--RET 100 0 100.00 0.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 666 3 0.15 25.25 GT 1.9656 AG 1.9656 1.0188 3178 0
SLC34A2--ROS1 92 2 92.00 2.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 6 95.00 13.57 GT 1.8892 AG 1.7465 0.9577 999 0
CCDC6--RET 88 0 88.00 0.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 896 58 0.10 1.51 GT 1.8892 AG 1.8323 0.8965 2092 0
EML4--ALK 83 0 83.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 309 14 0.27 5.60 GT 1.6895 AG 1.9086 0.8456 1550 0
CD74--ROS1 70 1 70.00 1.00 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 11405 6 0.01 10.29 GT 1.7819 AG 1.7465 0.7234 2407 0
PAX8--PPARG 51 0 51.00 0.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 30 1 1.68 26.00 GT 1.8295 AG 1.9329 0.5196 1923 0
EGFR--SEPTIN14 49 0 49.00 0.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 2 5 16.67 8.33 GT 1.8892 AG 1.9899 0.4992 658 0
SLC45A3--BRAF 30 0 30.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 764 31.00 0.04 GT 1.5628 AG 1.7465 0.3056 2599 0
TFG--NTRK1 22 0 22.00 0.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 779 3 0.03 5.75 GT 1.9329 AG 1.6895 0.2241 883 0
NSF--LRRC37A2 9 0 9.00 0.00 NSF^ENSG00000073969.18 15332 chr17:46704854:+ LRRC37A2^ENSG00000238083.8 33686 chr17:46517362:+ ONLY_REF_SPLICE YES 152 73 0.07 0.14 GT 1.6729 AG 1.7232 0.0917 2175 0
NSF--LRRC37A2 1 0 1.00 0.00 NSF^ENSG00000073969.18 15332 chr17:46704854:+ LRRC37A2^ENSG00000238083.8 28875 chr17:46511511:+ ONLY_REF_SPLICE YES 152 0 0.01 2.00 GT 1.6729 AG 1.9329 0.0102 911 0
NSF--LRRC37A2 1 0 1.00 0.00 NSF^ENSG00000073969.18 15332 chr17:46704854:+ LRRC37A2^ENSG00000238083.8 34758 chr17:46520212:+ ONLY_REF_SPLICE YES 152 145 0.01 0.01 GT 1.6729 AG 1.7232 0.0102 3247 0
E2F4--MBD5 3 0 3.00 0.00 E2F4^ENSG00000205250.9 4728 chr16:67195882:+ MBD5^ENSG00000204406.14 10669 chr2:148021505:+ INCL_NON_REF_SPLICE YES 884 271 0.00 0.01 CT 1.7819 TG 1.8256 0.0306 386 0
NLRC5--BCL2L12 3 0 3.00 0.00 NLRC5^ENSG00000140853.16 42620 chr16:57070618:+ BCL2L12^ENSG00000126453.10 62223 chr19:49673698:+ ONLY_REF_SPLICE YES 466 962 0.01 0.00 GT 1.8323 AG 1.8892 0.0306 1248 0
PRPSAP1--RNPEP 2 0 2.00 0.00 PRPSAP1^ENSG00000161542.17 5598 chr17:76348529:- RNPEP^ENSG00000176393.11 26403 chr1:201999902:+ ONLY_REF_SPLICE YES 146 185 0.02 0.02 GT 1.6895 AG 1.8892 0.0204 1240 0
MGLL--LARP4B 1 0 1.00 0.00 MGLL^ENSG00000074416.14 9068 chr3:127821694:- LARP4B^ENSG00000107929.15 39696 chr10:864270:- ONLY_REF_SPLICE YES 582 468 0.00 0.00 GT 1.4295 AG 1.8892 0.0102 1008 0
26 rows