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Filename
multiqc_general_stats.json
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23KMKGLT4/nfcore_rnafusion_100M__5f1fa79--20260304-094520/QC/multiqc/multiqc_data/multiqc_general_stats.json
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1.2 MB
Workflow Run
dev_rna_exp0001R_5f1fa79
Published
Mar 09, 2026 12:41 PM

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{
  "source_file": "multiqc_general_stats.txt",
  "total_samples": 240,
  "metrics": [
    "Sample",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-reads",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-unique_reads",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_dupes",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_on_target",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_off_target",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-n_q30",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-mean_depth",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-q50_depth",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt30x",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt100x",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-gc_bias",
    "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads",
    "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct",
    "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated",
    "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct",
    "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean",
    "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm",
    "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median",
    "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean",
    "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION",
    "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES",
    "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES",
    "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent",
    "STAR_mqc-generalstats-star-uniquely_mapped_percent",
    "STAR_mqc-generalstats-star-uniquely_mapped",
    "fastp_mqc-generalstats-fastp-pct_duplication",
    "fastp_mqc-generalstats-fastp-after_filtering_q30_rate",
    "fastp_mqc-generalstats-fastp-after_filtering_q30_bases",
    "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads",
    "fastp_mqc-generalstats-fastp-after_filtering_gc_content",
    "fastp_mqc-generalstats-fastp-pct_surviving",
    "fastp_mqc-generalstats-fastp-pct_adapter",
    "Kallisto_mqc-generalstats-kallisto-fragment_length",
    "Kallisto_mqc-generalstats-kallisto-percent_aligned",
    "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences"
  ],
  "samples": [
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_on_target": 0.913468,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_off_target": 0.072378,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-n_q30": 0.967618,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt30x": 0.527725,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt100x": 0.406842,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-gc_bias": 0,
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      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 196393625,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 144.5,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.48,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.79,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.9,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.06,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 157,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 311.447525,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.366073,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.1255,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.83126738750597,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.45,
      "STAR_mqc-generalstats-star-uniquely_mapped": 93033916,
      "fastp_mqc-generalstats-fastp-pct_duplication": 17.7261,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.96624,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 24361943847,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 196998046,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.584687,
      "fastp_mqc-generalstats-fastp-pct_surviving": 98.499023,
      "fastp_mqc-generalstats-fastp-pct_adapter": 57.7292015,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
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      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
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      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-reads": 196422056,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": 0.005815,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-unique_reads": 140882228,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_on_target": 0.918199,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_off_target": 0.073694,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-n_q30": 0.968279,
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      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 313886078,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 146,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.05,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.32,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.69,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.1,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.63,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.91,
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      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 166,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 373.672654,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.284411,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.5329,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.7013371750789,
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      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.96734,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 24514471419,
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      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
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      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
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      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null
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      "Sample": "FFPE_V4_0001_RNA_0005_23KMKGLT4_10_1",
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-reads": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_on_target": null,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-n_q30": null,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-gc_bias": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
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      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": 146,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": 95.75399923519791,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 94040987,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 71.01088935761341,
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      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 100000000,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null
    },
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-reads": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_on_target": null,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-n_q30": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-mean_depth": null,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-gc_bias": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
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      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
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      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null,
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      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 71.61396980173242,
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      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 146,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.05,
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      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 164,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
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      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
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      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 71.49358765059621,
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      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 141.2,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.05,
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      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
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      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null,
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      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
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      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 70.98429139790358,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
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      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 71.27448094026477,
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      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.8,
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      "Kallisto_mqc-generalstats-kallisto-fragment_length": 133.3,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
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      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null,
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      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
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      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
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      "fastp_mqc-generalstats-fastp-pct_surviving": null,
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      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
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      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 70.85521138788839,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
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      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
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      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.06,
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      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
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      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 147.2,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.05,
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      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 138,
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      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.05,
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