SampleID,Lanes,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
FFPE_HD789_02_RNA_0011_23KMKGLT4_1,"5,6,7,8",TTAGTTGCTG-ATGGCGGATT,398309082,391464472,6844610,0,0.013,0.9828,0.0172,0.0
FFPE_V4_0001_RNA_0001_23KMKGLT4_1,"5,6,7,8",GAAGCAAGCG-TCACCGACTA,380414695,371927881,8486814,0,0.0124,0.9777,0.0223,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_1,"1,2,3,4",GCGCGGTTAA-AAGCTATAGC,316554234,303880738,12673496,0,0.0103,0.96,0.04,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_10,"1,2,3,4",ACTAGTAGTC-ACGTACACTC,346266906,334479335,11787571,0,0.0113,0.966,0.034,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_11,"1,2,3,4",AATAGACTGC-TCAAGGTCGC,328267241,316117477,12149764,0,0.0107,0.963,0.037,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_12,"1,2,3,4",ATGATCAACG-GTATAGCGTC,298479405,287271423,11207982,0,0.0097,0.9624,0.0376,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_13,"1,2,3,4",TAGGAAGCGG-CCAATCCAGG,309596152,298700692,10895460,0,0.0101,0.9648,0.0352,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_14,"1,2,3,4",GCATCCTACT-GACATCGCGA,287648589,276126670,11521919,0,0.0094,0.9599,0.0401,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_15,"1,2,3,4",AGTCCAGCGT-TGTCGTATTG,309267916,297559784,11708132,0,0.0101,0.9621,0.0379,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_16,"1,2,3,4",AGGCAGCCAT-GAGTGTCTAG,296333419,285576584,10756835,0,0.0097,0.9637,0.0363,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_17,"1,2,3,4",GCGACTCGTA-CAGGCCATGT,342161508,323167089,18994419,0,0.0112,0.9445,0.0555,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_18,"1,2,3,4",GTATCTGAGG-ACGTATCTTG,361431251,349227502,12203749,0,0.0118,0.9662,0.0338,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_19,"1,2,3,4",CATCACCTAA-TGGTGGTATT,312149982,297417102,14732880,0,0.0102,0.9528,0.0472,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_2,"1,2,3,4",TTCCTTGAGG-TAAGACAGCA,313298390,301302737,11995653,0,0.0102,0.9617,0.0383,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_20,"1,2,3,4",CGGCATATAC-ATGAGCTGGA,316833634,305270310,11563324,0,0.0103,0.9635,0.0365,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_21,"1,2,3,4",CACGAGTGTC-TAGGCTAGAG,282818424,273498190,9320234,0,0.0092,0.967,0.033,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_22,"1,2,3,4",CGGAGACTAT-ATGCTTCTAC,286654986,274995595,11659391,0,0.0093,0.9593,0.0407,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_23,"1,2,3,4",AAGGTGTTAG-TGTGCTGGTG,346762453,333045207,13717246,0,0.0113,0.9604,0.0396,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_24,"1,2,3,4",GCGATGGAAG-GCCGCAAGAT,323010094,310154932,12855162,0,0.0105,0.9602,0.0398,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_25,"1,2,3,4",ACGGTCGCAT-GTACTCTCTA,359070196,346430606,12639590,0,0.0117,0.9648,0.0352,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_26,"1,2,3,4",TTACACACGG-AACTCCGAGA,334665710,323198168,11467542,0,0.0109,0.9657,0.0343,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_27,"1,2,3,4",CGAGATTAGA-CTAATCGCGG,208625835,199166507,9459328,0,0.0068,0.9547,0.0453,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_28,"1,2,3,4",CAAGGATCGA-GCAGACACAA,290074347,279868256,10206091,0,0.0095,0.9648,0.0352,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_29,"1,2,3,4",ACAACACACA-CATCGGCACT,265700909,256251091,9449818,0,0.0087,0.9644,0.0356,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_3,"1,2,3,4",GAGTCGCTTC-AGCGAAGATT,315988524,303412259,12576265,0,0.0103,0.9602,0.0398,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_30,"1,2,3,4",AAGAGCTCGC-CCAATAGATC,267350151,257767211,9582940,0,0.0087,0.9642,0.0358,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_31,"1,2,3,4",ACAGAGGCGT-GACATATCGG,265427923,255761466,9666457,0,0.0087,0.9636,0.0364,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_32,"1,2,3,4",AACTGTACGG-CTCCAATATG,280974122,270559396,10414726,0,0.0092,0.9629,0.0371,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_33,"1,2,3,4",GCGAAGTAGG-ACCATTGTGT,386115309,372689848,13425461,0,0.0126,0.9652,0.0348,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_34,"1,2,3,4",GTGAAGACAC-TGGCTTGATC,313550696,302647358,10903338,0,0.0102,0.9652,0.0348,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_35,"1,2,3,4",GACTTAGGTC-CTATGGACTT,296805850,286886800,9919050,0,0.0097,0.9666,0.0334,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_36,"1,2,3,4",AGGACGGACA-GAAGTCGTGG,241738036,232251373,9486663,0,0.0079,0.9608,0.0392,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_37,"1,2,3,4",CCTATGTGTA-TAGTGAGTCG,344780174,331929240,12850934,0,0.0112,0.9627,0.0373,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_38,"1,2,3,4",CAACGTTGAC-TTGGACGGAA,241324667,232194279,9130388,0,0.0079,0.9622,0.0378,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_39,"1,2,3,4",TGACATAGGT-TACCAGAGAT,310395985,299377975,11018010,0,0.0101,0.9645,0.0355,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_4,"1,2,3,4",GTACGCTCAA-ATTGATGGCG,307972916,296862115,11110801,0,0.01,0.9639,0.0361,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_40,"1,2,3,4",TTACACCAAC-ATGAGTTAGG,229817167,221654254,8162913,0,0.0075,0.9645,0.0355,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_41,"1,2,3,4",CCTGGAATTA-CGTCATCGAA,345503110,329779329,15723781,0,0.0113,0.9545,0.0455,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_42,"1,2,3,4",GCAACATCAA-TGACCTAGTT,272022885,261373991,10648894,0,0.0089,0.9609,0.0391,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_43,"1,2,3,4",ACAGCCAGGT-TCATGGTACT,274792258,264992082,9800176,0,0.009,0.9643,0.0357,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_44,"1,2,3,4",TAGTCCATCT-GACAGGACAG,279511881,269213006,10298875,0,0.0091,0.9632,0.0368,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_45,"1,2,3,4",GCCTCTCAGA-CGTGACGACT,243167121,233944090,9223031,0,0.0079,0.9621,0.0379,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_46,"1,2,3,4",TAGGTTCAAG-ACTTACCGGC,320543061,309673281,10869780,0,0.0105,0.9661,0.0339,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_47,"1,2,3,4",AAGACTCTCG-GCTCTCCTTC,256513508,246045302,10468206,0,0.0084,0.9592,0.0408,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_48,"1,2,3,4",GAAGATCGAC-AGTGACCACG,244482262,235392743,9089519,0,0.008,0.9628,0.0372,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_5,"1,2,3,4",TAGAAGATCG-CGACCAGTGT,324681009,309016423,15664586,0,0.0106,0.9518,0.0482,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_6,"1,2,3,4",AACCTAGTGC-TACAGGTCCT,339049112,327147816,11901296,0,0.0111,0.9649,0.0351,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_7,"1,2,3,4",CGTGTATGTC-GCATCTCTAT,312680031,301951438,10728593,0,0.0102,0.9657,0.0343,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_8,"1,2,3,4",TTCAGATCCA-TGGCATTGGA,266970922,257540009,9430913,0,0.0087,0.9647,0.0353,0.0
FFPE_V4_0001_RNA_0005_23KMKGLT4_9,"1,2,3,4",CTCACCAGTT-TTGGTGTGTC,376509783,361513470,14996313,0,0.0123,0.9602,0.0398,0.0
NTC_0001_0001_23KMKGLT4_1,"5,6,7,8",GATCTGTATG-ATCGAAGAGC,3096639,3031627,65012,0,0.0001,0.979,0.021,0.0
Undetermined,"1,2,3,4,5,6,7,8",,1595731550,1595731550,0,0,0.052,1.0,0.0,0.0
tih_rna_sample_00129_23KMKGLT4_1,"5,6,7,8",AGGCAATCGC-ATGAGTCTGT,314468772,309644823,4823949,0,0.0103,0.9847,0.0153,0.0
tih_rna_sample_00134_23KMKGLT4_1,"5,6,7,8",ATTCTCCACG-TCGATGATCG,141679553,138863887,2815666,0,0.0046,0.9801,0.0199,0.0
tih_rna_sample_00136_23KMKGLT4_1,"5,6,7,8",CCAATGTTGA-CTTGAATGTC,322985408,318364796,4620612,0,0.0105,0.9857,0.0143,0.0
tih_rna_sample_00141_23KMKGLT4_1,"5,6,7,8",TTCGCGGACT-AGAGAGTGGT,383296044,376412574,6883470,0,0.0125,0.982,0.018,0.0
tih_rna_sample_00145_23KMKGLT4_1,"5,6,7,8",GATGCTAGAA-TGGATGCCAG,321969734,316630089,5339645,0,0.0105,0.9834,0.0166,0.0
tih_rna_sample_00146_23KMKGLT4_1,"5,6,7,8",ACGATGGTTA-AATTGCTAGG,419344106,410684647,8659459,0,0.0137,0.9793,0.0207,0.0
tih_rna_sample_00149_23KMKGLT4_1,"5,6,7,8",AGTCAGATGC-CTCACACACT,256339470,251231363,5108107,0,0.0084,0.9801,0.0199,0.0
tih_rna_sample_00150_23KMKGLT4_1,"5,6,7,8",AGTACAACTG-CATTGAGTTC,459126156,452250665,6875491,0,0.015,0.985,0.015,0.0
tih_rna_sample_00151_23KMKGLT4_1,"5,6,7,8",CTTAGTACGC-GCTACAACGA,340297590,334221968,6075622,0,0.0111,0.9821,0.0179,0.0
tih_rna_sample_00153_23KMKGLT4_1,"5,6,7,8",ACTTCCGTTC-CAATTCCGTG,159603286,156943960,2659326,0,0.0052,0.9833,0.0167,0.0
tih_rna_sample_00154_23KMKGLT4_1,"5,6,7,8",CCACCTGCTT-TGTTACCGTC,281813152,275654224,6158928,0,0.0092,0.9781,0.0219,0.0
tih_rna_sample_00156_23KMKGLT4_1,"5,6,7,8",ACGCAACACA-CATTCAGGAG,28063786,27451942,611844,0,0.0009,0.9782,0.0218,0.0
tih_rna_sample_00157_23KMKGLT4_1,"5,6,7,8",CCAGTGCACT-CCTCCGTATC,396925622,386052495,10873127,0,0.0129,0.9726,0.0274,0.0
tih_rna_sample_00158_23KMKGLT4_1,"5,6,7,8",CATCAGGCGT-CGTGTTACCG,384767440,376628949,8138491,0,0.0125,0.9788,0.0212,0.0
tih_rna_sample_00161_23KMKGLT4_1,"5,6,7,8",CTTACTCTCT-CTGCTTAAGG,327692197,320846456,6845741,0,0.0107,0.9791,0.0209,0.0
tih_rna_sample_00164_23KMKGLT4_1,"5,6,7,8",ATAGGCAGTG-CAGAACTTAG,172680235,169872148,2808087,0,0.0056,0.9837,0.0163,0.0
tih_rna_sample_00166_23KMKGLT4_1,"5,6,7,8",ATGGTTGTTG-AGTTATGAGG,392689827,385431591,7258236,0,0.0128,0.9815,0.0185,0.0
tih_rna_sample_00168_23KMKGLT4_1,"5,6,7,8",CTACAAGTTC-GCACCATGAA,289581088,284775170,4805918,0,0.0094,0.9834,0.0166,0.0
tih_rna_sample_00300_23KMKGLT4_1,"5,6,7,8",CCGACAACCT-TTCTACCTGT,148051492,144602806,3448686,0,0.0048,0.9767,0.0233,0.0
tih_rna_sample_00334_23KMKGLT4_1,"5,6,7,8",GAATAGAGTG-CACAGCGTCT,421894590,415004565,6890025,0,0.0138,0.9837,0.0163,0.0
tih_rna_sample_00338_23KMKGLT4_1,"5,6,7,8",GTAACAGGAA-TGTCTTCAGA,113617216,111415951,2201265,0,0.0037,0.9806,0.0194,0.0
tih_rna_sample_00339_23KMKGLT4_1,"5,6,7,8",ACAATAGCAC-GTATGCCTAT,367268702,361180658,6088044,0,0.012,0.9834,0.0166,0.0
tih_rna_sample_00361_23KMKGLT4_1,"5,6,7,8",AACCTGATCT-ATTCCGTCCG,329128952,322509864,6619088,0,0.0107,0.9799,0.0201,0.0
tih_rna_sample_00427_23KMKGLT4_1,"5,6,7,8",TTGGATTGTC-CGGCTGTTAG,296015237,290219166,5796071,0,0.0097,0.9804,0.0196,0.0
tih_rna_sample_00430_23KMKGLT4_1,"5,6,7,8",AATTGGCACA-CAGTCGGAGT,213076026,209300414,3775612,0,0.0069,0.9823,0.0177,0.0
tih_rna_sample_00434_23KMKGLT4_1,"5,6,7,8",TGCAACACTA-CGTTCTGGTA,298726269,293334007,5392262,0,0.0097,0.9819,0.0181,0.0
tih_rna_sample_00437_23KMKGLT4_1,"5,6,7,8",GAATCGCCTG-CATTGACGGC,392691073,384363595,8327478,0,0.0128,0.9788,0.0212,0.0
tih_rna_sample_00440_23KMKGLT4_1,"5,6,7,8",TCGCATGACA-TTGGCCAATG,171782233,168449936,3332297,0,0.0056,0.9806,0.0194,0.0
tih_rna_sample_00441_23KMKGLT4_1,"5,6,7,8",TCAATACGTG-GCTGCTAATA,340809187,334144658,6664529,0,0.0111,0.9804,0.0196,0.0
tih_rna_sample_00450_23KMKGLT4_1,"5,6,7,8",TGTTACAGAG-TGTGTACCAG,281257814,270508992,10748822,0,0.0092,0.9618,0.0382,0.0
tih_rna_sample_00451_23KMKGLT4_1,"5,6,7,8",TTACGGACGC-ATTGGCCAGC,284973341,279700589,5272752,0,0.0093,0.9815,0.0185,0.0
tih_rna_sample_00453_23KMKGLT4_1,"5,6,7,8",CGTACTTAGA-CCGATGTTCA,224877944,221151818,3726126,0,0.0073,0.9834,0.0166,0.0
tih_rna_sample_00457_23KMKGLT4_1,"5,6,7,8",GCCGTGAACA-GCACCACCAT,381162042,372386099,8775943,0,0.0124,0.977,0.023,0.0
tih_rna_sample_00460_23KMKGLT4_1,"5,6,7,8",AACGCGACTG-GACCTACGAG,211739062,207516678,4222384,0,0.0069,0.9801,0.0199,0.0
tih_rna_sample_00461_23KMKGLT4_1,"5,6,7,8",AGAGCAGTAT-CAAGAGGAGG,539397523,530200798,9196725,0,0.0176,0.983,0.017,0.0
tih_rna_sample_00462_23KMKGLT4_1,"5,6,7,8",AGGAGACCAC-TACCACGTAG,477634127,468784869,8849258,0,0.0156,0.9815,0.0185,0.0
tih_rna_sample_00464_23KMKGLT4_1,"5,6,7,8",TCGTGACGAC-GTGACTAACT,302357247,297446029,4911218,0,0.0099,0.9838,0.0162,0.0
tih_rna_sample_00467_23KMKGLT4_1,"5,6,7,8",TCAATCTAGC-TCCGAATAAG,298344512,293312600,5031912,0,0.0097,0.9831,0.0169,0.0
tih_rna_sample_00473_23KMKGLT4_1,"5,6,7,8",GCGGAGTCAA-CTCTATAGCT,441481647,432789557,8692090,0,0.0144,0.9803,0.0197,0.0
tih_rna_sample_00475_23KMKGLT4_1,"5,6,7,8",TTGTGATCCT-ATGAAGGCAT,290590318,286243843,4346475,0,0.0095,0.985,0.015,0.0
tih_rna_sample_00476_23KMKGLT4_1,"5,6,7,8",TAAGATCGGA-TTCATCCGTG,274202638,270248566,3954072,0,0.0089,0.9856,0.0144,0.0
tih_rna_sample_00479_23KMKGLT4_1,"5,6,7,8",GTACGCATCG-GAGTTGTTCA,361174115,353002998,8171117,0,0.0118,0.9774,0.0226,0.0
tih_rna_sample_00480_23KMKGLT4_1,"5,6,7,8",TGGTGGTTGT-TACCTGTCAA,444416468,437280061,7136407,0,0.0145,0.9839,0.0161,0.0
tih_rna_sample_00481_23KMKGLT4_1,"5,6,7,8",ATCCTAGAAC-TGAAGTCTGC,399675410,393471219,6204191,0,0.013,0.9845,0.0155,0.0
tih_rna_sample_00482_23KMKGLT4_1,"5,6,7,8",GCCTAGAGTC-ATGGTTCTCT,98313547,96773150,1540397,0,0.0032,0.9843,0.0157,0.0