================================================================================
BCL CONVERT QC REPORT - DETAILED
================================================================================
1. % UNDETERMINED PER LANE
--------------------------------------------------------------------------------
%_Undetermined Undetermined_Reads Total_Reads
Lane
1 5.52 221059769 4004297187
2 5.90 225513465 3822265332
3 5.35 200487374 3746919997
4 5.32 200329565 3768247701
5 4.74 171826374 3628757465
6 4.75 184145712 3874163237
7 4.94 190151678 3850667784
8 5.09 202217613 3974555505
2. SAMPLES WITH LOW READS (NON-NTC)
--------------------------------------------------------------------------------
No samples found with low reads
3. NTC SAMPLES WITH HIGH READS
--------------------------------------------------------------------------------
Found 1 NTC samples with high reads:
SampleID Index # Reads
0 NTC_0001_0001_23KMKGLT4_1 GATCTGTATG-ATCGAAGAGC 3096639
4. TOP UNKNOWN BARCODES
--------------------------------------------------------------------------------
Found 132 significant unknown barcodes:
Lane index index2 # Reads % of Unknown Barcodes % of All Reads Percentage_of_Lane Percentage_of_Total
0 1 CTCACCAGTT GGGGGGGGGG 8458630 0.038264 0.002112 0.211239 0.027580
1 1 TAGAAGATCG GGGGGGGGGG 7394299 0.033449 0.001847 0.184659 0.024109
2 1 AGTCCAGCGT GGGGGGGGGG 7306092 0.033050 0.001825 0.182456 0.023822
3 1 AATAGACTGC GGGGGGGGGG 5668678 0.025643 0.001416 0.141565 0.018483
4 1 AGGACGGACA GGGGGGGGGG 4620766 0.020903 0.001154 0.115395 0.015066
5 1 GCGAAGTAGG CAGGCCATGT 4572171 0.020683 0.001142 0.114182 0.014908
6 1 CATCACCTAA GGGGGGGGGG 4463209 0.020190 0.001115 0.111460 0.014552
7 1 ACGGTCGCAT CGTCATCGAA 4368466 0.019761 0.001091 0.109094 0.014244
8 1 CCTGGAATTA GGGGGGGGGG 3811715 0.017243 0.000952 0.095191 0.012428
9 1 CGGCATATAC GGGGGGGGGG 3713173 0.016797 0.000927 0.092730 0.012107
10 1 GCGACTCGTA ACCATTGTGT 3307477 0.014962 0.000826 0.082598 0.010784
11 1 GCGACTCGTA GGGGGGGGGG 3287995 0.014874 0.000821 0.082112 0.010721
12 1 CAACGTTGAC GGGGGGGGGG 3189964 0.014430 0.000797 0.079664 0.010401
13 1 ATGATCAACG GGGGGGGGGG 3151810 0.014258 0.000787 0.078711 0.010277
14 1 AGGCAGCCAT GGGGGGGGGG 3149692 0.014248 0.000787 0.078658 0.010270
15 1 TGTTACAGAG CGTCATCGAA 2979753 0.013479 0.000744 0.074414 0.009716
16 1 ACGGTCGCAT AAGCTATAGC 2870719 0.012986 0.000717 0.071691 0.009360
17 1 GCGCGGTTAA GGGGGGGGGG 2790916 0.012625 0.000697 0.069698 0.009100
18 1 TTCAGATCCA GGGGGGGGGG 2789274 0.012618 0.000697 0.069657 0.009095
19 1 GCGCGGTTAA GTACTCTCTA 2722580 0.012316 0.000680 0.067991 0.008877
20 1 CCTATGTGTA GGGGGGGGGG 2607642 0.011796 0.000651 0.065121 0.008502
21 1 CCTGGAATTA TGTGTACCAG 2290216 0.010360 0.000572 0.057194 0.007467
22 1 CCTGGAATTA GTACTCTCTA 2016250 0.009121 0.000504 0.050352 0.006574
23 2 CTCACCAGTT GGGGGGGGGG 6725259 0.029822 0.001759 0.175950 0.021928
24 2 AGTCCAGCGT GGGGGGGGGG 5750923 0.025501 0.001505 0.150458 0.018751
25 2 TAGAAGATCG GGGGGGGGGG 5489139 0.024341 0.001436 0.143610 0.017897
26 2 AATAGACTGC GGGGGGGGGG 4332307 0.019211 0.001133 0.113344 0.014126
27 2 GCGAAGTAGG CAGGCCATGT 4076991 0.018079 0.001067 0.106664 0.013293
28 2 ACGGTCGCAT CGTCATCGAA 3904348 0.017313 0.001021 0.102147 0.012730
29 2 CATCACCTAA GGGGGGGGGG 3517635 0.015598 0.000920 0.092030 0.011469
30 2 AGGACGGACA GGGGGGGGGG 3494155 0.015494 0.000914 0.091416 0.011393
31 2 CCTGGAATTA GGGGGGGGGG 3012663 0.013359 0.000788 0.078819 0.009823
32 2 CGGCATATAC GGGGGGGGGG 2945794 0.013063 0.000771 0.077069 0.009605
33 2 GCGACTCGTA ACCATTGTGT 2944708 0.013058 0.000770 0.077041 0.009601
34 2 TGTTACAGAG CGTCATCGAA 2654226 0.011770 0.000694 0.069441 0.008654
35 2 ACGGTCGCAT AAGCTATAGC 2577659 0.011430 0.000674 0.067438 0.008405
36 2 CAACGTTGAC GGGGGGGGGG 2488362 0.011034 0.000651 0.065102 0.008113
37 2 AGGCAGCCAT GGGGGGGGGG 2463579 0.010924 0.000645 0.064453 0.008033
38 2 GCGACTCGTA GGGGGGGGGG 2438677 0.010814 0.000638 0.063802 0.007951
39 2 GCGCGGTTAA GTACTCTCTA 2432896 0.010788 0.000637 0.063651 0.007933
40 2 ATGATCAACG GGGGGGGGGG 2432085 0.010785 0.000636 0.063629 0.007930
41 2 TTCAGATCCA GGGGGGGGGG 2168461 0.009616 0.000567 0.056732 0.007070
42 2 GCGCGGTTAA GGGGGGGGGG 2101575 0.009319 0.000550 0.054982 0.006852
43 2 CCTATGTGTA GGGGGGGGGG 2076137 0.009206 0.000543 0.054317 0.006769
44 2 CCTGGAATTA TGTGTACCAG 2056470 0.009119 0.000538 0.053802 0.006705
45 3 CTCACCAGTT GGGGGGGGGG 6353099 0.031688 0.001696 0.169555 0.020714
46 3 AGTCCAGCGT GGGGGGGGGG 5195636 0.025915 0.001387 0.138664 0.016941
47 3 TAGAAGATCG GGGGGGGGGG 4880808 0.024345 0.001303 0.130262 0.015914
48 3 GCGAAGTAGG CAGGCCATGT 4151455 0.020707 0.001108 0.110796 0.013536
49 3 AATAGACTGC GGGGGGGGGG 4031237 0.020107 0.001076 0.107588 0.013144
50 3 ACGGTCGCAT CGTCATCGAA 3987944 0.019891 0.001064 0.106433 0.013003
51 3 CATCACCTAA GGGGGGGGGG 3349193 0.016705 0.000894 0.089385 0.010920
52 3 AGGACGGACA GGGGGGGGGG 3196524 0.015944 0.000853 0.085311 0.010422
53 3 GCGACTCGTA ACCATTGTGT 3006908 0.014998 0.000803 0.080250 0.009804
54 3 CGGCATATAC GGGGGGGGGG 2881372 0.014372 0.000769 0.076900 0.009395
55 3 CCTGGAATTA GGGGGGGGGG 2827073 0.014101 0.000755 0.075451 0.009218
56 3 TGTTACAGAG CGTCATCGAA 2704405 0.013489 0.000722 0.072177 0.008818
57 3 ACGGTCGCAT AAGCTATAGC 2627111 0.013104 0.000701 0.070114 0.008566
58 3 GCGCGGTTAA GTACTCTCTA 2496230 0.012451 0.000666 0.066621 0.008139
59 3 AGGCAGCCAT GGGGGGGGGG 2457459 0.012257 0.000656 0.065586 0.008013
60 3 CAACGTTGAC GGGGGGGGGG 2412657 0.012034 0.000644 0.064390 0.007867
61 3 ATGATCAACG GGGGGGGGGG 2345782 0.011700 0.000626 0.062606 0.007648
62 3 GCGACTCGTA GGGGGGGGGG 2318844 0.011566 0.000619 0.061887 0.007561
63 3 CCTATGTGTA GGGGGGGGGG 2111070 0.010530 0.000563 0.056341 0.006883
64 3 TTCAGATCCA GGGGGGGGGG 2107300 0.010511 0.000562 0.056241 0.006871
65 3 CCTGGAATTA TGTGTACCAG 2081886 0.010384 0.000556 0.055563 0.006788
66 3 GCGCGGTTAA GGGGGGGGGG 2033531 0.010143 0.000543 0.054272 0.006630
67 4 CTCACCAGTT GGGGGGGGGG 6049099 0.030196 0.001605 0.160528 0.019723
68 4 AGTCCAGCGT GGGGGGGGGG 4946219 0.024690 0.001313 0.131260 0.016127
69 4 TAGAAGATCG GGGGGGGGGG 4612384 0.023024 0.001224 0.122401 0.015039
70 4 GCGAAGTAGG CAGGCCATGT 4281644 0.021373 0.001136 0.113624 0.013960
71 4 ACGGTCGCAT CGTCATCGAA 4068746 0.020310 0.001080 0.107974 0.013266
72 4 AATAGACTGC GGGGGGGGGG 3800972 0.018974 0.001009 0.100868 0.012393
73 4 CATCACCTAA GGGGGGGGGG 3251052 0.016229 0.000863 0.086275 0.010600
74 4 GCGACTCGTA ACCATTGTGT 3071285 0.015331 0.000815 0.081504 0.010014
75 4 AGGACGGACA GGGGGGGGGG 3021813 0.015084 0.000802 0.080191 0.009853
76 4 CGGCATATAC GGGGGGGGGG 2816660 0.014060 0.000747 0.074747 0.009184
77 4 TGTTACAGAG CGTCATCGAA 2757669 0.013766 0.000732 0.073182 0.008991
78 4 CCTGGAATTA GGGGGGGGGG 2725624 0.013606 0.000723 0.072331 0.008887
79 4 ACGGTCGCAT AAGCTATAGC 2687520 0.013415 0.000713 0.071320 0.008763
80 4 GCGCGGTTAA GTACTCTCTA 2562849 0.012793 0.000680 0.068012 0.008356
81 4 AGGCAGCCAT GGGGGGGGGG 2398519 0.011973 0.000637 0.063651 0.007820
82 4 CAACGTTGAC GGGGGGGGGG 2344071 0.011701 0.000622 0.062206 0.007643
83 4 ATGATCAACG GGGGGGGGGG 2256026 0.011262 0.000599 0.059869 0.007356
84 4 GCGACTCGTA GGGGGGGGGG 2234566 0.011154 0.000593 0.059300 0.007286
85 4 CCTGGAATTA TGTGTACCAG 2126765 0.010616 0.000564 0.056439 0.006934
86 4 CCTATGTGTA GGGGGGGGGG 2114862 0.010557 0.000561 0.056123 0.006896
87 4 TTCAGATCCA GGGGGGGGGG 2042821 0.010197 0.000542 0.054211 0.006661
88 4 GCGCGGTTAA GGGGGGGGGG 1980505 0.009886 0.000526 0.052558 0.006457
89 4 CCTGGAATTA GTACTCTCTA 1892375 0.009446 0.000502 0.050219 0.006170
90 5 CCAGTGCACT GGGGGGGGGG 8539896 0.049701 0.002353 0.235339 0.027845
91 5 TTGGATTGTC GGGGGGGGGG 4910547 0.028579 0.001353 0.135323 0.016011
92 5 CATCAGGCGT GGGGGGGGGG 4439230 0.025836 0.001223 0.122335 0.014474
93 5 ACAATAGCAC GGGGGGGGGG 3094884 0.018012 0.000853 0.085288 0.010091
94 5 AATTGGCACA GGGGGGGGGG 2733163 0.015907 0.000753 0.075320 0.008912
95 5 GTACGCATCG GGGGGGGGGG 2701236 0.015721 0.000744 0.074440 0.008807
96 5 TGCAACACTA GGGGGGGGGG 2660121 0.015481 0.000733 0.073307 0.008673
97 5 GAAGCAAGCG GGGGGGGGGG 1876059 0.010918 0.000517 0.051700 0.006117
98 5 CCACCTGCTT GGGGGGGGGG 1827986 0.010639 0.000504 0.050375 0.005960
99 6 CCAGTGCACT GGGGGGGGGG 11955380 0.064923 0.003086 0.308593 0.038981
100 6 TTGGATTGTC GGGGGGGGGG 6822504 0.037049 0.001761 0.176103 0.022245
101 6 CATCAGGCGT GGGGGGGGGG 6072888 0.032979 0.001568 0.156754 0.019801
102 6 ACAATAGCAC GGGGGGGGGG 4081883 0.022167 0.001054 0.105362 0.013309
103 6 AATTGGCACA GGGGGGGGGG 3718466 0.020193 0.000960 0.095981 0.012124
104 6 GTACGCATCG GGGGGGGGGG 3573840 0.019408 0.000922 0.092248 0.011653
105 6 TGCAACACTA GGGGGGGGGG 3383154 0.018372 0.000873 0.087326 0.011031
106 6 GAAGCAAGCG GGGGGGGGGG 2685584 0.014584 0.000693 0.069320 0.008756
107 6 CCACCTGCTT GGGGGGGGGG 2217437 0.012042 0.000572 0.057237 0.007230
108 6 TCGCATGACA GGGGGGGGGG 2075737 0.011272 0.000536 0.053579 0.006768
109 7 CCAGTGCACT GGGGGGGGGG 12520817 0.065846 0.003252 0.325160 0.040824
110 7 TTGGATTGTC GGGGGGGGGG 7190619 0.037815 0.001867 0.186737 0.023445
111 7 CATCAGGCGT GGGGGGGGGG 6398853 0.033651 0.001662 0.166175 0.020864
112 7 ACAATAGCAC GGGGGGGGGG 4262477 0.022416 0.001107 0.110694 0.013898
113 7 AATTGGCACA GGGGGGGGGG 3935036 0.020694 0.001022 0.102191 0.012830
114 7 GTACGCATCG GGGGGGGGGG 3781413 0.019886 0.000982 0.098201 0.012329
115 7 TGCAACACTA GGGGGGGGGG 3522018 0.018522 0.000915 0.091465 0.011484
116 7 GAAGCAAGCG GGGGGGGGGG 2870324 0.015095 0.000745 0.074541 0.009359
117 7 CCACCTGCTT GGGGGGGGGG 2310566 0.012151 0.000600 0.060004 0.007534
118 7 TCGCATGACA GGGGGGGGGG 2172931 0.011427 0.000564 0.056430 0.007085
119 7 AGTACAACTG GGGGGGGGGG 1973818 0.010380 0.000513 0.051259 0.006436
120 8 CCAGTGCACT GGGGGGGGGG 13808902 0.068287 0.003474 0.347433 0.045024
121 8 TTGGATTGTC GGGGGGGGGG 8055516 0.039836 0.002027 0.202677 0.026265
122 8 CATCAGGCGT GGGGGGGGGG 7292412 0.036062 0.001835 0.183477 0.023777
123 8 ACAATAGCAC GGGGGGGGGG 4755613 0.023517 0.001197 0.119651 0.015506
124 8 AATTGGCACA GGGGGGGGGG 4462422 0.022067 0.001123 0.112275 0.014550
125 8 GTACGCATCG GGGGGGGGGG 4370742 0.021614 0.001100 0.109968 0.014251
126 8 TGCAACACTA GGGGGGGGGG 3938302 0.019476 0.000991 0.099088 0.012841
127 8 GAAGCAAGCG GGGGGGGGGG 3465446 0.017137 0.000872 0.087191 0.011299
128 8 CCACCTGCTT GGGGGGGGGG 2611613 0.012915 0.000657 0.065708 0.008515
129 8 TCGCATGACA GGGGGGGGGG 2436248 0.012048 0.000613 0.061296 0.007943
130 8 AGTACAACTG GGGGGGGGGG 2300837 0.011378 0.000579 0.057889 0.007502
131 8 GCCGTGAACA GGGGGGGGGG 2057642 0.010175 0.000518 0.051770 0.006709
5. BARCODES WITH HIGH MISMATCH RATES
--------------------------------------------------------------------------------
No barcodes found with high mismatch rates
================================================================================
FINAL STATUS CHECK
================================================================================
Overall % Undetermined: 5.20%
Status: FAIL
Reason(s):
Overall undetermined 5.20% >= 5.0%
NTC sample NTC_0001_0001_23KMKGLT4_1 has 3,096,639 reads > 2,000,000