File Info

Filename
tih_rna_sample_00163_23H5VFLT4_s43.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23H5VFLT4/nfcore_rnafusion__2cae617--20260515-145204/star_alignment/tih_rna_sample_00163_23H5VFLT4_s43.Log.final.out
Size
2.0 KB
Published
May 16, 2026 3:16 AM
                                 Started job on |	May 16 08:34:42
                             Started mapping on |	May 16 08:36:16
                                    Finished on |	May 16 09:34:48
       Mapping speed, Million of reads per hour |	304.54

                          Number of input reads |	297094326
                      Average input read length |	257
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285451634
                        Uniquely mapped reads % |	96.08%
                          Average mapped length |	256.71
                       Number of splices: Total |	310488708
            Number of splices: Annotated (sjdb) |	307024389
                       Number of splices: GT/AG |	307637938
                       Number of splices: GC/AG |	2054151
                       Number of splices: AT/AC |	264393
               Number of splices: Non-canonical |	532226
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.08
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.55
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7322797
             % of reads mapped to multiple loci |	2.46%
        Number of reads mapped to too many loci |	292432
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	525369
       % of reads unmapped: too many mismatches |	0.18%
            Number of reads unmapped: too short |	1635519
                 % of reads unmapped: too short |	0.55%
                Number of reads unmapped: other |	168638
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2787687
                            % of chimeric reads |	0.94%