File Info

Filename
tih_rna_sample_00088_23H5VFLT4_s02.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23H5VFLT4/nfcore_rnafusion__2cae617--20260515-145204/star_alignment/tih_rna_sample_00088_23H5VFLT4_s02.Log.final.out
Size
2.0 KB
Published
May 16, 2026 3:16 AM
                                 Started job on |	May 16 08:35:32
                             Started mapping on |	May 16 08:37:50
                                    Finished on |	May 16 09:34:52
       Mapping speed, Million of reads per hour |	311.75

                          Number of input reads |	296331829
                      Average input read length |	255
                                    UNIQUE READS:
                   Uniquely mapped reads number |	283576853
                        Uniquely mapped reads % |	95.70%
                          Average mapped length |	254.71
                       Number of splices: Total |	347409684
            Number of splices: Annotated (sjdb) |	344185044
                       Number of splices: GT/AG |	344891734
                       Number of splices: GC/AG |	1687412
                       Number of splices: AT/AC |	184261
               Number of splices: Non-canonical |	646277
                      Mismatch rate per base, % |	0.26%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.04
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.59
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7403032
             % of reads mapped to multiple loci |	2.50%
        Number of reads mapped to too many loci |	262712
             % of reads mapped to too many loci |	0.09%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	630173
       % of reads unmapped: too many mismatches |	0.21%
            Number of reads unmapped: too short |	2112764
                 % of reads unmapped: too short |	0.71%
                Number of reads unmapped: other |	200685
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3348548
                            % of chimeric reads |	1.13%