tih_rna_sample_00127_23H5VFLT4_s08.arriba.fusions.filter_summary.txt

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Filename: tih_rna_sample_00127_23H5VFLT4_s08.arriba.fusions.filter_summary.txt
Full Path: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23H5VFLT4/nfcore_rnafusion__2cae617--20260515-145204/arriba/tih_rna_sample_00127_23H5VFLT4_s08.arriba.fusions.filter_summary.txt
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Workflow Run: dev_rna_exp0001_2cae617
Published: May 16, 2026 3:17 AM

Content

ARRIBA FILTERING SUMMARY
================================================================================

Input file: tih_rna_sample_00127_23H5VFLT4_s08.arriba.fusions.tsv
Filter config: arriba_filter_config.yaml
AIH blacklist breakpoints (staged path): blacklist_breakpoint_database_2026-04-27.tsv
Output TSV (all rows): tih_rna_sample_00127_23H5VFLT4_s08.arriba.fusions.filtered.tsv
Output TSV (PASS only): tih_rna_sample_00127_23H5VFLT4_s08.arriba.fusions.filtered_pass_only.tsv

Total fusions: 68
Pass (FILTER=PASS): 4 (5.9%)
Fail (FILTER=FAIL): 64 (94.1%)

AIH curated blacklist:
  Total blacklisted: 9
  All blacklisted rows have FILTER=FAIL

Failure reasons:
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 10
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 8
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 5
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0);aih_curated_blacklist: 4
  same_gene;confidence_below_min(medium<high);aih_curated_blacklist: 3
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
  total_reads_below_min(7.0<8.0): 2
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 2
  total_reads_below_min(3.0<8.0): 2
  confidence_below_min(medium<high): 2
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 2
  confidence_below_min(low<high): 2
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
  total_reads_below_min(6.0<8.0): 1
  total_reads_below_min(5.0<8.0): 1
  same_gene;confidence_below_min(medium<high): 1
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 1
  same_gene;confidence_below_min(medium<high);total_reads_below_min(3.0<8.0);aih_curated_blacklist: 1
  same_gene;confidence_below_min(low<high);total_reads_below_min(7.0<8.0);aih_curated_blacklist: 1
  same_gene;confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1

Breakdown by confidence:
  high: 4 pass, 6 fail (total: 10)
  low: 0 pass, 32 fail (total: 32)
  medium: 0 pass, 26 fail (total: 26)