File Info
- Filename
- tih_rna_sample_00127_23H5VFLT4_s08.arriba.fusions.filtered_pass_only.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23H5VFLT4/nfcore_rnafusion__2cae617--20260515-145204/arriba/tih_rna_sample_00127_23H5VFLT4_s08.arriba.fusions.filtered_pass_only.tsv
- Size
- 8.5 KB
- Workflow Run
- dev_rna_exp0001_2cae617
- Published
- May 16, 2026 3:17 AM
Content
View in new tab| #gene1 | gene2 | strand1(gene/fusion) | strand2(gene/fusion) | breakpoint1 | breakpoint2 | site1 | site2 | type | split_reads1 | split_reads2 | discordant_mates | coverage1 | coverage2 | confidence | reading_frame | tags | retained_protein_domains | closest_genomic_breakpoint1 | closest_genomic_breakpoint2 | gene_id1 | gene_id2 | transcript_id1 | transcript_id2 | direction1 | direction2 | filters | fusion_transcript | peptide_sequence | read_identifiers | breakpoint_ID | vaf1 | vaf2 | vaf_avg | total_reads | blacklisted | aih_curated_reason | FILTER | filter_reason |
| FBXL20 | GPR179 | -/- | -/- | chr17:39401361 | chr17:38339525 | CDS/splice-site | CDS/splice-site | deletion | 7 | 8 | 0 | 2342 | 210 | high | out-of-frame | . | |7_transmembrane_sweet-taste_receptor_of_3_GCPR(100%) | . | . | ENSG00000108306 | ENSG00000277399 | ENST00000264658 | ENST00000616987 | upstream | downstream | duplicates(23) | CCCCGTCCCGGAACTCCCGGGCCTGTCCTGGGCCCCCGGTCTGTGCACTCCGCTCGCCGCAGCGCCCGGCCCGGGCCGCACCCGCCGGCCCCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTTGAG|GGGGCAGGTGCAGATGGACGTAGATCTCCAGAGTGTGGACATCAATCAGTGTGCAAGTGGCCCAGGCTGGTACTCTAACACACACCTGTGTGATCTCAACAGCACCCAG___TGTGTtCCCCT | MRRDVNGVTKSRFE|gagadgrrspecghqsvckwprlvl* | LH00166:224:23H5VFLT4:5:2223:36531:15433,LH00166:224:23H5VFLT4:5:2437:25327:2303,LH00166:224:23H5VFLT4:6:2417:15279:18894,LH00166:224:23H5VFLT4:6:2437:29631:23826,LH00166:224:23H5VFLT4:7:1212:30092:3214,LH00166:224:23H5VFLT4:7:1247:3605:16498,LH00166:224:23H5VFLT4:7:1262:21977:26600,LH00166:224:23H5VFLT4:7:1426:11622:14690,LH00166:224:23H5VFLT4:7:1435:6930:18810,LH00166:224:23H5VFLT4:7:2122:42413:18529,LH00166:224:23H5VFLT4:7:2247:2497:16540,LH00166:224:23H5VFLT4:7:2307:34112:22985,LH00166:224:23H5VFLT4:7:2315:33845:29305,LH00166:224:23H5VFLT4:7:2373:42793:22439,LH00166:224:23H5VFLT4:8:1438:4252:7334,LH00166:224:23H5VFLT4:8:2164:29922:28590,LH00166:224:23H5VFLT4:8:2215:5862:16708,LH00166:224:23H5VFLT4:8:2461:43950:29207,LH00166:224:23H5VFLT4:5:1351:32349:8833,LH00166:224:23H5VFLT4:5:1396:2068:15881,LH00166:224:23H5VFLT4:5:1424:19623:6689,LH00166:224:23H5VFLT4:5:2229:9066:12812,LH00166:224:23H5VFLT4:6:2123:31791:25241,LH00166:224:23H5VFLT4:6:2358:35868:2822,LH00166:224:23H5VFLT4:7:1185:48221:7235,LH00166:224:23H5VFLT4:7:1410:20456:26376,LH00166:224:23H5VFLT4:7:1483:36928:1603,LH00166:224:23H5VFLT4:7:2322:45293:26068,LH00166:224:23H5VFLT4:7:2333:40188:1617,LH00166:224:23H5VFLT4:8:1102:15651:27918,LH00166:224:23H5VFLT4:8:1342:11493:10598,LH00166:224:23H5VFLT4:8:1428:44872:28590,LH00166:224:23H5VFLT4:8:1443:39144:3844,LH00166:224:23H5VFLT4:8:2124:2885:25984,LH00166:224:23H5VFLT4:8:2124:2893:25998,LH00166:224:23H5VFLT4:8:2209:20667:18782,LH00166:224:23H5VFLT4:8:2278:25537:3088,LH00166:224:23H5VFLT4:8:2353:16873:25017 | chr17:39401361-chr17:38339525 | 0.002979991485738612 | 0.03669724770642202 | 0.019838619596080315 | 15 | False | PASS | ||
| AMPD2 | SLC35A3 | +/+ | +/+ | chr1:109620278 | chr1:99993537 | CDS/splice-site | CDS/splice-site | duplication | 8 | 6 | 0 | 1056 | 639 | high | out-of-frame | . | |Nucleotide-sugar_transporter(100%) | . | . | ENSG00000116337 | ENSG00000117620 | ENST00000342115 | ENST00000370153 | downstream | upstream | duplicates(22),mismatches(1) | ACTTGGCTGGGGTCTGTGGCCCGATCCCCCTGCCGTCCCTCAGGACCCGGGCTTTCTGCTGTACAGACTTCTCGTGGGCAGCCTCCCCTCGGAACTCGGGCATCATGGCCTCAG|GCAAATGAAGATAAAACAATGTTCGCCAACCTAAAATACGTTTCCCTGGGAATTTTGGTCTTTCAGACTACCAGTTTGGTTCTAAC | MAS|gk* | LH00166:224:23H5VFLT4:5:1255:38117:27595,LH00166:224:23H5VFLT4:5:1269:25391:8328,LH00166:224:23H5VFLT4:5:1484:6857:28464,LH00166:224:23H5VFLT4:5:2214:30617:24751,LH00166:224:23H5VFLT4:5:2219:2278:13835,LH00166:224:23H5VFLT4:5:2436:43788:19258,LH00166:224:23H5VFLT4:6:2243:31944:5610,LH00166:224:23H5VFLT4:7:1447:13645:20547,LH00166:224:23H5VFLT4:7:2406:48157:4965,LH00166:224:23H5VFLT4:8:1198:1170:24751,LH00166:224:23H5VFLT4:8:2191:29347:25353,LH00166:224:23H5VFLT4:8:2212:22042:10038,LH00166:224:23H5VFLT4:8:2351:14437:18053,LH00166:224:23H5VFLT4:8:2491:40965:26138,LH00166:224:23H5VFLT4:8:2491:40981:26138,LH00166:224:23H5VFLT4:5:1255:42057:8749,LH00166:224:23H5VFLT4:5:2146:43400:4293,LH00166:224:23H5VFLT4:5:2319:35350:23952,LH00166:224:23H5VFLT4:5:2319:35666:19062,LH00166:224:23H5VFLT4:6:1414:14251:22551,LH00166:224:23H5VFLT4:6:2113:44419:7207,LH00166:224:23H5VFLT4:6:2147:33886:13569,LH00166:224:23H5VFLT4:6:2261:45366:8875,LH00166:224:23H5VFLT4:6:2422:25925:1883,LH00166:224:23H5VFLT4:6:2423:3945:18936,LH00166:224:23H5VFLT4:7:1351:18531:20351,LH00166:224:23H5VFLT4:7:1458:49945:14424,LH00166:224:23H5VFLT4:7:2128:2327:17759,LH00166:224:23H5VFLT4:7:2171:30553:10206,LH00166:224:23H5VFLT4:7:2270:20707:6689,LH00166:224:23H5VFLT4:8:1130:13030:8945,LH00166:224:23H5VFLT4:8:1290:30982:10921,LH00166:224:23H5VFLT4:8:1459:29687:18599,LH00166:224:23H5VFLT4:8:2215:38538:5092,LH00166:224:23H5VFLT4:8:2266:26540:24527,LH00166:224:23H5VFLT4:8:2414:21314:23630,LH00166:224:23H5VFLT4:8:2460:50576:3438 | chr1:109620278-chr1:99993537 | 0.007518796992481203 | 0.009302325581395349 | 0.008410561286938276 | 14 | False | PASS | ||
| NLK | SRCIN1(31074),EPOP(34677) | +/+ | ./- | chr17:28172618 | chr17:38637026 | CDS/splice-site | intergenic | inversion | 13 | 1 | 0 | 683 | 2 | high | out-of-frame | . | Protein_kinase_domain(84%)| | . | . | ENSG00000087095 | . | ENST00000407008 | . | downstream | downstream | duplicates(11) | AGGACGAAGAATATTGTTTCAGGCACAGAGTCCCATTCAGCAG___TTGGATTTGATCACGGATCTGTTGGGCACACCATCACTGGAAGCAATGAGGACAGCTTGTGAAGGCGCTAAGGCACATATACTCAGGGGTCCTCATAAACAG|GTCTCTCTCTGGTTGCAGTATGAAGATCTGACTGGAAGAACACACGCACAGATGCAGGGAAACCAGTTAAGAGATCGGAGCAGCTGTCCAGGTGAGTGAA | GRRILFQAQSPIQQLDLITDLLGTPSLEAMRTACEGAKAHILRGPHKQ|vslwlqyedltgrthaqmqgnqlrdrsscpge* | LH00166:224:23H5VFLT4:5:1154:42348:11495,LH00166:224:23H5VFLT4:5:1154:42356:11509,LH00166:224:23H5VFLT4:5:1325:4932:29193,LH00166:224:23H5VFLT4:5:2232:9551:16315,LH00166:224:23H5VFLT4:5:2239:27446:20127,LH00166:224:23H5VFLT4:5:2357:39775:19202,LH00166:224:23H5VFLT4:5:2401:14324:25283,LH00166:224:23H5VFLT4:5:2411:4681:16540,LH00166:224:23H5VFLT4:5:2450:24453:14634,LH00166:224:23H5VFLT4:5:2482:31216:29011,LH00166:224:23H5VFLT4:6:2434:51829:25171,LH00166:224:23H5VFLT4:6:2454:13693:14354,LH00166:224:23H5VFLT4:6:2475:16371:9604,LH00166:224:23H5VFLT4:6:2498:2238:9982,LH00166:224:23H5VFLT4:7:1470:45091:20169,LH00166:224:23H5VFLT4:7:1480:34719:20533,LH00166:224:23H5VFLT4:7:2268:43028:19482,LH00166:224:23H5VFLT4:7:2268:43036:19468,LH00166:224:23H5VFLT4:7:2274:14235:29613,LH00166:224:23H5VFLT4:8:1101:9252:5932,LH00166:224:23H5VFLT4:8:1219:16719:18950,LH00166:224:23H5VFLT4:8:1478:50406:1350,LH00166:224:23H5VFLT4:8:2386:2116:18487,LH00166:224:23H5VFLT4:8:2397:24954:9113,LH00166:224:23H5VFLT4:6:2235:21694:26390 | chr17:28172618-chr17:38637026 | 0.01867816091954023 | 0.3333333333333333 | 0.17600574712643677 | 14 | False | PASS | ||
| AMPD2 | AC118553.2 | +/+ | +/+ | chr1:109620278 | chr1:99993537 | CDS/splice-site | 5'UTR/splice-site | duplication | 8 | 6 | 0 | 1056 | 639 | high | out-of-frame | . | |Major_Facilitator_Superfamily(100%),Nucleotide-sugar_transporter(100%) | . | . | ENSG00000116337 | ENSG00000283761 | ENST00000342115 | ENST00000639171 | downstream | upstream | duplicates(22),mismatches(1) | ACTTGGCTGGGGTCTGTGGCCCGATCCCCCTGCCGTCCCTCAGGACCCGGGCTTTCTGCTGTACAGACTTCTCGTGGGCAGCCTCCCCTCGGAACTCGGGCATCATGGCCTCAG|GCAAATGAAGATAAAACAATGTTCGCCAACCTAAAATACGTTTCCCTGGGAATTTTGGTCTTTCAGACTACCAGTTTGGTTCTAAC | MAS|gk* | LH00166:224:23H5VFLT4:5:1255:38117:27595,LH00166:224:23H5VFLT4:5:1269:25391:8328,LH00166:224:23H5VFLT4:5:1484:6857:28464,LH00166:224:23H5VFLT4:5:2214:30617:24751,LH00166:224:23H5VFLT4:5:2219:2278:13835,LH00166:224:23H5VFLT4:5:2436:43788:19258,LH00166:224:23H5VFLT4:6:2243:31944:5610,LH00166:224:23H5VFLT4:7:1447:13645:20547,LH00166:224:23H5VFLT4:7:2406:48157:4965,LH00166:224:23H5VFLT4:8:1198:1170:24751,LH00166:224:23H5VFLT4:8:2191:29347:25353,LH00166:224:23H5VFLT4:8:2212:22042:10038,LH00166:224:23H5VFLT4:8:2351:14437:18053,LH00166:224:23H5VFLT4:8:2491:40965:26138,LH00166:224:23H5VFLT4:8:2491:40981:26138,LH00166:224:23H5VFLT4:5:1255:42057:8749,LH00166:224:23H5VFLT4:5:2146:43400:4293,LH00166:224:23H5VFLT4:5:2319:35350:23952,LH00166:224:23H5VFLT4:5:2319:35666:19062,LH00166:224:23H5VFLT4:6:1414:14251:22551,LH00166:224:23H5VFLT4:6:2113:44419:7207,LH00166:224:23H5VFLT4:6:2147:33886:13569,LH00166:224:23H5VFLT4:6:2261:45366:8875,LH00166:224:23H5VFLT4:6:2422:25925:1883,LH00166:224:23H5VFLT4:6:2423:3945:18936,LH00166:224:23H5VFLT4:7:1351:18531:20351,LH00166:224:23H5VFLT4:7:1458:49945:14424,LH00166:224:23H5VFLT4:7:2128:2327:17759,LH00166:224:23H5VFLT4:7:2171:30553:10206,LH00166:224:23H5VFLT4:7:2270:20707:6689,LH00166:224:23H5VFLT4:8:1130:13030:8945,LH00166:224:23H5VFLT4:8:1290:30982:10921,LH00166:224:23H5VFLT4:8:1459:29687:18599,LH00166:224:23H5VFLT4:8:2215:38538:5092,LH00166:224:23H5VFLT4:8:2266:26540:24527,LH00166:224:23H5VFLT4:8:2414:21314:23630,LH00166:224:23H5VFLT4:8:2460:50576:3438 | chr1:109620278-chr1:99993537 | 0.007518796992481203 | 0.009302325581395349 | 0.008410561286938276 | 14 | False | PASS |
5 rows