File Info

Filename
tih_rna_sample_00396_23H5VFLT4_s26.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23H5VFLT4/nfcore_rnafusion__2cae617--20260515-145204/star_alignment/tih_rna_sample_00396_23H5VFLT4_s26.Log.final.out
Size
2.0 KB
Published
May 16, 2026 3:17 AM
                                 Started job on |	May 16 08:34:42
                             Started mapping on |	May 16 08:36:25
                                    Finished on |	May 16 09:35:18
       Mapping speed, Million of reads per hour |	302.77

                          Number of input reads |	297135441
                      Average input read length |	269
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284529357
                        Uniquely mapped reads % |	95.76%
                          Average mapped length |	269.00
                       Number of splices: Total |	327506121
            Number of splices: Annotated (sjdb) |	323705776
                       Number of splices: GT/AG |	324350134
                       Number of splices: GC/AG |	2316561
                       Number of splices: AT/AC |	321110
               Number of splices: Non-canonical |	518316
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.63
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8106338
             % of reads mapped to multiple loci |	2.73%
        Number of reads mapped to too many loci |	248636
             % of reads mapped to too many loci |	0.08%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	598972
       % of reads unmapped: too many mismatches |	0.20%
            Number of reads unmapped: too short |	1746123
                 % of reads unmapped: too short |	0.59%
                Number of reads unmapped: other |	153979
                     % of reads unmapped: other |	0.05%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2894208
                            % of chimeric reads |	0.97%