File Info

Filename
tih_rna_sample_00115_23H5VFLT4_s35.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23H5VFLT4/nfcore_rnafusion__2cae617--20260515-145204/star_alignment/tih_rna_sample_00115_23H5VFLT4_s35.Log.final.out
Size
2.0 KB
Published
May 16, 2026 3:17 AM
                                 Started job on |	May 16 08:29:40
                             Started mapping on |	May 16 08:31:50
                                    Finished on |	May 16 09:34:14
       Mapping speed, Million of reads per hour |	239.21

                          Number of input reads |	248776857
                      Average input read length |	226
                                    UNIQUE READS:
                   Uniquely mapped reads number |	234985226
                        Uniquely mapped reads % |	94.46%
                          Average mapped length |	226.02
                       Number of splices: Total |	201265990
            Number of splices: Annotated (sjdb) |	198858028
                       Number of splices: GT/AG |	199461368
                       Number of splices: GC/AG |	1167505
                       Number of splices: AT/AC |	124415
               Number of splices: Non-canonical |	512702
                      Mismatch rate per base, % |	0.43%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.57
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8358257
             % of reads mapped to multiple loci |	3.36%
        Number of reads mapped to too many loci |	405655
             % of reads mapped to too many loci |	0.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	655315
       % of reads unmapped: too many mismatches |	0.26%
            Number of reads unmapped: too short |	1868710
                 % of reads unmapped: too short |	0.75%
                Number of reads unmapped: other |	291105
                     % of reads unmapped: other |	0.12%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3241746
                            % of chimeric reads |	1.30%