Runs
dev_rna_exp0001_2cae617
Processes
Login
Processes
Process
Succeeded
Failed
Aborted
Running
Cached
Retried
Submitted
NFCORE_RNAFUSION:GENERATE_SAMPLE_TYPE_MAP
1
DEMULTIPLEX:BCLCONVERT
8
DEMULTIPLEX:FLOWCELL_QC
1
DEMULTIPLEX:AGGREGATE_DEMUX_STATS
1
DEMULTIPLEX:CAT_FASTQ
96
DEMULTIPLEX:SAMPLESHEET_FROM_MERGED
1
RNAFUSION:FASTQC
96
TRIM_WORKFLOW:FASTP
96
2
TRIM_WORKFLOW:FASTQC_FOR_FASTP
96
2
RNAFUSION:KALLISTO_INDEX
1
RNAFUSION:KALLISTO_QUANT
96
1
RNAFUSION:KALLISTO_TO_TX2GENE_QC
96
RNAFUSION:KALLISTO_TO_MULTIQC
96
RNAFUSION:GTF2BED
1
FASTQ_ALIGN_STAR:STAR_ALIGNMENT
96
2
FASTQ_ALIGN_STAR:SAMTOOLS_INDEX_STAR_ALIGNMENT
96
RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM
95
1
RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM
95
ARRIBA_WORKFLOW:ARRIBA
95
1
1
ARRIBA_WORKFLOW:ARRIBA_FILTER
95
STARFUSION_WORKFLOW:STARFUSION
10
86
95
STARFUSION_WORKFLOW:STARFUSION_FILTER
9
1
FUSIONREPORT_WORKFLOW:FUSIONREPORT
8
FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR
1
1
1
1
FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV
1
FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT
1
FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION
1
RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS
18
77
72
RNAFUSION:CANCER_INTRONS_TO_VCF
18
QC_WORKFLOW:GATK4_MARKDUPLICATES
55
41
1
QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS
3
93
QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS
95
1
BAM_RSEQC:RSEQC_BAMSTAT
88
8
2
BAM_RSEQC:RSEQC_INNERDISTANCE
95
BAM_RSEQC:RSEQC_INFEREXPERIMENT
95
1
BAM_RSEQC:RSEQC_JUNCTIONANNOTATION
85
10
4
BAM_RSEQC:RSEQC_JUNCTIONSATURATION
91
5
BAM_RSEQC:RSEQC_READDISTRIBUTION
74
21
1
BAM_RSEQC:RSEQC_READDUPLICATION
88
8
QC_WORKFLOW:SEQTOOL_QC
22
33
QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION
49
6
QC_WORKFLOW:SEQTOOL_TO_MULTIQC
21
1
QC_WORKFLOW:PRESEQ_LCEXTRAP
23
73
QC_WORKFLOW:PRESEQ_TO_MULTIQC
22
1
RNA_CONTAMINATION_DETECTION_WORKFLOW:NGSCheckMATE
85
9
2
RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES
84
1
RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION
83
RNAFUSION:CONTAMINATION_SKIPPED_LOW_READS
1
RNAFUSION:CONTAMINATION_TO_MULTIQC
83
RNAFUSION:MULTIQC
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_JSON
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_TSV
RNAFUSION:MULTIQC_EXTRACT_CONTROLS
RNAFUSION:RUN_LEVEL_INTERMEDIATE
RNAFUSION:RUN_LEVEL_METRICS