#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	212	0	212.00	0.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	11	659	17.75	0.32	GT	1.8892	AG	1.7819	2.1646	627	0
TMPRSS2--ERG	150	0	150.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	0	5	151.00	25.17	GT	1.6895	AG	1.9219	1.5316	1104	0
LMNA--NTRK1	80	1	80.00	0.92	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	701	16	0.12	4.82	GT	1.7465	AG	1.5058	0.8262	947	0
LMNA--NTRK1	7	1	7.00	0.08	LMNA^ENSG00000160789.23	17678	chr1:156130718:+	NTRK1^ENSG00000198400.13	33571	chr1:156865211:+	INCL_NON_REF_SPLICE	NO	813	1	0.01	4.50	TG	1.9656	TT	1.6895	0.0723	420	0
FGFR3--BAIAP2L1	56	0	56.00	0.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	11	17	4.75	3.17	GT	1.8892	AG	1.8062	0.5718	1171	0
CD74--ROS1	40	0	40.00	0.00	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	11527	0	0.00	41.00	GT	1.7819	AG	1.7465	0.4084	2407	0
SLC34A2--ROS1	38	0	38.00	0.00	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	0	39.00	39.00	GT	1.8892	AG	1.7465	0.388	999	0
CCDC6--RET	36	0	36.00	0.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	606	21	0.06	1.68	GT	1.8892	AG	1.8323	0.3676	2092	0
KIF5B--RET	36	0	36.00	0.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	375	1	0.10	18.50	GT	1.9656	AG	1.9656	0.3676	3178	0
TPM3--NTRK1	34	0	34.00	0.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	2752	1	0.01	17.50	GT	1.9329	AG	1.6895	0.3472	355	0
NCOA4--RET	30	0	30.00	0.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	746	21	0.04	1.41	GT	1.9086	AG	1.8323	0.3063	5144	0
ETV6--NTRK3	29	0	29.00	0.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	990	1	0.03	15.00	GT	1.7819	AG	1.9656	0.2961	1252	0
EGFR--AC069287.1	24	0	24.00	0.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	AC069287.1^ENSG00000254468.2	45121	chr11:121426:-	ONLY_REF_SPLICE	YES	1	18	12.50	1.32	GT	1.8892	AG	1.9899	0.2451	1220	0
EML4--ALK	19	0	19.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	198	18	0.10	1.05	GT	1.6895	AG	1.9086	0.194	1550	0
PAX8--PPARG	14	0	14.00	0.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	25	4	0.58	3.00	GT	1.8295	AG	1.9329	0.1429	1923	0
SLC45A3--BRAF	14	0	14.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	1	640	7.50	0.02	GT	1.5628	AG	1.7465	0.1429	2599	0
TFG--NTRK1	13	0	13.00	0.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	387	1	0.04	7.00	GT	1.9329	AG	1.6895	0.1327	883	0
LAT2--EIF4H	2	0	2.00	0.00	LAT2^ENSG00000086730.17	1034	chr7:74199685:+	EIF4H^ENSG00000106682.16	26332	chr7:74194741:+	ONLY_REF_SPLICE	YES	0	954	3.00	0.00	GT	1.7465	AG	1.9656	0.0204	1133	0
MALT1--RPRD1A	1	0	1.00	0.00	MALT1^ENSG00000172175.15	41388	chr18:58671852:+	RPRD1A^ENSG00000141425.18	132889	chr18:36033837:-	ONLY_REF_SPLICE	YES	709	317	0.00	0.01	GT	1.6402	AG	1.3996	0.0102	952	0
MALT1--RPRD1A	1	0	1.00	0.00	MALT1^ENSG00000172175.15	66023	chr18:58696487:+	RPRD1A^ENSG00000141425.18	139611	chr18:35993300:-	ONLY_REF_SPLICE	YES	227	123	0.01	0.02	GT	1.2419	AG	1.7819	0.0102	430	0
PCMTD1--MCPH1	1	0	1.00	0.00	PCMTD1^ENSG00000168300.14	3802	chr8:51860845:-	MCPH1^ENSG00000147316.13	31241	chr8:6455143:+	ONLY_REF_SPLICE	YES	187	77	0.01	0.03	GT	1.7465	AG	1.7465	0.0102	1816	0
PCMTD1--MCPH1	1	0	1.00	0.00	PCMTD1^ENSG00000168300.14	1257	chr8:51898930:-	MCPH1^ENSG00000147316.13	32679	chr8:6477594:+	ONLY_REF_SPLICE	YES	221	86	0.01	0.02	GT	1.6402	AG	1.6402	0.0102	4043	0