#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	1931	4	1931.00	4.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	47	1385	40.33	1.40	GT	1.8892	AG	1.7819	19.7291	627	0
FGFR3--TACC3	3	3	3.00	0.00	FGFR3^ENSG00000068078.20	9859	chr4:1806915:+	TACC3^ENSG00000013810.20	27591	chr4:1739703:+	INCL_NON_REF_SPLICE	YES	216	1422	0.03	0.00	TA	1.8062	GG	1.7819	0.0306	636	0
TMPRSS2--ERG	1245	0	1245.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	4	75	249.20	16.39	GT	1.6895	AG	1.9219	12.6939	1104	0
TMPRSS2--ERG	6	0	6.00	0.00	TMPRSS2^ENSG00000184012.14	4646	chr21:41508087:-	ERG^ENSG00000157554.19	28748	chr21:38584948:-	INCL_NON_REF_SPLICE	YES	4	0	1.40	7.00	CG	1.5628	TT	1.9899	0.0612	1101	0
TMPRSS2--ERG	4	0	4.00	0.00	TMPRSS2^ENSG00000184012.14	4656	chr21:41508077:-	ERG^ENSG00000157554.19	28756	chr21:38584940:-	INCL_NON_REF_SPLICE	YES	0	84	5.00	0.06	GC	1.6729	AT	1.9656	0.0408	1109	0
LMNA--NTRK1	613	6	613.00	6.00	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	2270	138	0.27	4.46	GT	1.7465	AG	1.5058	6.3113	947	0
FGFR3--BAIAP2L1	509	1	509.00	1.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	49	23	10.22	21.29	GT	1.8892	AG	1.8062	5.1999	1171	0
ETV6--NTRK3	496	0	496.00	0.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	1306	10	0.38	45.18	GT	1.7819	AG	1.9656	5.0572	1252	0
TPM3--NTRK1	476	0	476.00	0.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	4404	17	0.11	26.50	GT	1.9329	AG	1.6895	4.8533	355	0
NCOA4--RET	426	2	426.00	2.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	1406	223	0.30	1.92	GT	1.9086	AG	1.8323	4.3639	5144	0
CCDC6--RET	360	2	360.00	2.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	1039	223	0.35	1.62	GT	1.8892	AG	1.8323	3.6909	2092	0
SLC34A2--ROS1	349	4	349.00	3.97	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	29	354.00	11.80	GT	1.8892	AG	1.7465	3.5989	999	0
SLC34A2--ROS1	4	3	4.00	0.03	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58028	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	0	44	8.00	0.18	GA	1.7465	TG	1.8892	0.0411	1002	0
KIF5B--RET	311	4	311.00	4.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	651	3	0.48	79.00	GT	1.9656	AG	1.9656	3.2117	3178	0
CD74--ROS1	246	5	246.00	4.94	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	14822	28	0.02	8.69	GT	1.7819	AG	1.7465	2.5586	2407	0
CD74--ROS1	3	5	3.00	0.06	CD74^ENSG00000019582.16	4987	chr5:150404683:-	ROS1^ENSG00000047936.11	48729	chr6:117324417:-	INCL_NON_REF_SPLICE	YES	16321	0	0.00	9.00	AA	1.8295	TT	1.5301	0.0312	2405	0
PAX8--PPARG	193	0	193.00	0.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	39	5	4.85	32.33	GT	1.8295	AG	1.9329	1.9678	1923	0
EML4--ALK	174	0	174.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	255	27	0.68	6.25	GT	1.6895	AG	1.9086	1.7741	1550	0
SLC45A3--BRAF	167	0	167.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	0	669	168.00	0.25	GT	1.5628	AG	1.7465	1.7027	2599	0
TFG--NTRK1	109	0	109.00	0.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	799	17	0.14	6.11	GT	1.9329	AG	1.6895	1.1114	883	0
EGFR--SEPTIN14	102	1	102.00	1.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	8	1	11.56	52.00	GT	1.8892	AG	1.9899	1.0502	658	0
MRPS18A--ESCO1	15	0	15.00	0.00	MRPS18A^ENSG00000096080.12	1124	chr6:43687668:-	ESCO1^ENSG00000141446.11	11695	chr18:21593488:-	ONLY_REF_SPLICE	YES	361	9	0.04	1.60	GT	1.7232	AG	1.7819	0.1529	1001	0
OR2T2--OR2T3	7	1	7.00	1.00	OR2T2^ENSG00000196240.5	3499	chr1:248449392:+	OR2T3^ENSG00000196539.3	10432	chr1:248473333:+	INCL_NON_REF_SPLICE	YES	5	0	1.50	9.00	GT	1.6402	AG	1.7819	0.0816	1197	0
CYB561D2--QRICH1	4	0	4.00	0.00	CYB561D2^ENSG00000114395.11	1716	chr3:50351560:+	QRICH1^ENSG00000198218.11	23321	chr3:49033228:-	ONLY_REF_SPLICE	YES	315	235	0.02	0.02	GT	1.7968	AG	1.9086	0.0408	480	0
AC105105.1--MALT1	3	0	3.00	0.00	AC105105.1^ENSG00000267257.1	2246	chr18:58536660:+	MALT1^ENSG00000172175.15	35537	chr18:58659863:+	INCL_NON_REF_SPLICE	YES	302	8	0.01	0.44	GT	1.9086	AG	1.9086	0.0306	290	0
AC105105.1--MALT1	3	0	3.00	0.00	AC105105.1^ENSG00000267257.1	2246	chr18:58536660:+	MALT1^ENSG00000172175.15	56844	chr18:58681170:+	INCL_NON_REF_SPLICE	YES	302	815	0.01	0.00	GT	1.9086	AG	1.9899	0.0306	227	0
FNBP4--NUP160	3	0	3.00	0.00	FNBP4^ENSG00000109920.13	2468	chr11:47765270:-	NUP160^ENSG00000030066.13	29798	chr11:47837623:-	ONLY_REF_SPLICE	YES	298	306	0.01	0.01	GT	1.9219	AG	1.8323	0.0306	1265	0
CCNJ--MARCHF8	2	0	2.00	0.00	CCNJ^ENSG00000107443.16	2069	chr10:96044462:+	MARCHF8^ENSG00000165406.16	13928	chr10:45553204:-	ONLY_REF_SPLICE	YES	137	32	0.02	0.09	GT	1.9656	AG	1.8323	0.0204	925	0
GMDS--DOCK11	2	0	2.00	0.00	GMDS^ENSG00000112699.11	10844	chr6:1930103:-	DOCK11^ENSG00000147251.16	39503	chrX:118593214:+	ONLY_REF_SPLICE	YES	103	186	0.03	0.02	GT	1.7819	AG	1.7056	0.0204	2517	0