File Info
- Filename
- V4_0001_RNA_0005_23H5VFLT4_s43.fusions.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23H5VFLT4/nfcore_rnafusion_100M__5f1fa79--20260304-093157/fusionreport/V4_0001_RNA_0005_23H5VFLT4_s43/V4_0001_RNA_0005_23H5VFLT4_s43.fusions.csv
- Size
- 8.8 KB
- Workflow Run
- dev_rna_exp0001_5f1fa79
- Published
- Mar 04, 2026 5:43 PM
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| FGFR3--TACC3 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 4:1806934#4:1739702,reading-frame: in-frame,type: duplication,split_reads1: 95,split_reads2: 108,discordant_mates: 3,coverage1: 2297,coverage2: 8467,confidence: high | position: chr4:1806934:+#chr4:1739702:+,junction_reads: 221,spanning_reads: 5,ffmp: 2.3121 |
| TMPRSS2--ERG | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 21:41508081#21:38584945,reading-frame: .,type: deletion,split_reads1: 14,split_reads2: 63,discordant_mates: 0,coverage1: 169,coverage2: 1923,confidence: high | position: chr21:41508081:-#chr21:38584945:-,junction_reads: 98,spanning_reads: 0,ffmp: 1.0026 |
| LMNA--NTRK1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 1:156130773#1:156874906,reading-frame: in-frame,type: deletion,split_reads1: 49,split_reads2: 37,discordant_mates: 1,coverage1: 8383,coverage2: 2595,confidence: high | position: chr1:156130773:+#chr1:156874906:+,junction_reads: 97,spanning_reads: 1,ffmp: 1.0025 |
| FGFR3--BAIAP2L1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 4:1806934#7:98362432,reading-frame: in-frame,type: translocation,split_reads1: 54,split_reads2: 39,discordant_mates: 0,coverage1: 2297,coverage2: 246,confidence: high | position: chr4:1806934:+#chr7:98362432:-,junction_reads: 94,spanning_reads: 0,ffmp: 0.9616 |
| TPM3--NTRK1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 1:154170400#1:156874571,reading-frame: in-frame,type: inversion,split_reads1: 49,split_reads2: 23,discordant_mates: 1,coverage1: 31711,coverage2: 911,confidence: high | position: chr1:154170400:-#chr1:156874571:+,junction_reads: 83,spanning_reads: 2,ffmp: 0.8696 |
| SLC34A2--ROS1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 4:25664330#6:117324415,reading-frame: in-frame,type: translocation,split_reads1: 10,split_reads2: 56,discordant_mates: 4,coverage1: 574,coverage2: 885,confidence: high | position: chr4:25664330:+#chr6:117324415:-,junction_reads: 83,spanning_reads: 5,ffmp: 0.9003 |
| CCDC6--RET | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 10:59906122#10:43116584,reading-frame: in-frame,type: inversion,split_reads1: 28,split_reads2: 42,discordant_mates: 0,coverage1: 5741,coverage2: 2257,confidence: high | position: chr10:59906122:-#chr10:43116584:+,junction_reads: 76,spanning_reads: 0,ffmp: 0.7775 |
| NCOA4--RET | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 10:46012883#10:43116584,reading-frame: in-frame,type: inversion,split_reads1: 31,split_reads2: 27,discordant_mates: 2,coverage1: 6794,coverage2: 2257,confidence: high | position: chr10:46012883:-#chr10:43116584:+,junction_reads: 69,spanning_reads: 1,ffmp: 0.7161 |
| CD74--ROS1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 5:150404680#6:117324415,reading-frame: in-frame,type: translocation,split_reads1: 21,split_reads2: 42,discordant_mates: 2,coverage1: 65535,coverage2: 885,confidence: medium | position: chr5:150404680:-#chr6:117324415:-,junction_reads: 66,spanning_reads: 2,ffmp: 0.6957 |
| KIF5B--RET | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 10:32017143#10:43114480,reading-frame: in-frame,type: inversion,split_reads1: 13,split_reads2: 40,discordant_mates: 1,coverage1: 3000,coverage2: 683,confidence: high | position: chr10:32017143:-#chr10:43114480:+,junction_reads: 57,spanning_reads: 2,ffmp: 0.6036 |
| SLC45A3--BRAF | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 1:205680394#7:140794467,reading-frame: .,type: translocation,split_reads1: 10,split_reads2: 37,discordant_mates: 0,coverage1: 30,coverage2: 3442,confidence: high | position: chr1:205680394:-#chr7:140794467:-,junction_reads: 50,spanning_reads: 0,ffmp: 0.5115 |
| ETV6--NTRK3 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 12:11869969#15:87940753,reading-frame: in-frame,type: translocation,split_reads1: 34,split_reads2: 14,discordant_mates: 0,coverage1: 7801,coverage2: 312,confidence: high | position: chr12:11869969:+#chr15:87940753:-,junction_reads: 50,spanning_reads: 0,ffmp: 0.5115 |
| TFG--NTRK1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 3:100732672#1:156874571,reading-frame: in-frame,type: translocation,split_reads1: 14,split_reads2: 17,discordant_mates: 2,coverage1: 2745,coverage2: 911,confidence: high | position: chr3:100732672:+#chr1:156874571:+,junction_reads: 34,spanning_reads: 3,ffmp: 0.3785 |
| PAX8--PPARG | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 2:113235394#3:12379704,reading-frame: in-frame,type: translocation,split_reads1: 11,split_reads2: 21,discordant_mates: 0,coverage1: 415,coverage2: 104,confidence: high | position: chr2:113235394:-#chr3:12379704:+,junction_reads: 33,spanning_reads: 0,ffmp: 0.3376 |
| EGFR--SEPTIN14 | Mitelman | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500) | position: 7:55200413#7:55796092,reading-frame: in-frame,type: inversion,split_reads1: 2,split_reads2: 7,discordant_mates: 0,coverage1: 186,coverage2: 56,confidence: high | position: chr7:55200413:+#chr7:55796092:-,junction_reads: 28,spanning_reads: 0,ffmp: 0.2864 |
| EML4--ALK | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 2:42295516#2:29223528,reading-frame: in-frame,type: inversion,split_reads1: 2,split_reads2: 9,discordant_mates: 0,coverage1: 2554,coverage2: 435,confidence: high | position: chr2:42295516:+#chr2:29223528:-,junction_reads: 18,spanning_reads: 0,ffmp: 0.1841 |
| EGFR--AC069287.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 7:55200413#11:121426,reading-frame: out-of-frame,type: translocation,split_reads1: 10,split_reads2: 4,discordant_mates: 0,coverage1: 186,coverage2: 52,confidence: high | ||
| MRPS18A--GAPVD1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 6:43687668#9:125329021,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 2,split_reads2: 5,discordant_mates: 0,coverage1: 1322,coverage2: 10,confidence: high | ||
| IGHV3-48--AHCTF1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 14:106537812#1:246903669,reading-frame: out-of-frame,type: translocation,split_reads1: 8,split_reads2: 0,discordant_mates: 0,coverage1: 4103,coverage2: 0,confidence: medium | ||
| MARK2P4--WDR17 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 4:176012212#4:176111575,reading-frame: .,type: deletion/read-through/3'-3',split_reads1: 1,split_reads2: 4,discordant_mates: 0,coverage1: 15,coverage2: 42,confidence: low | ||
| AGAP3--HOXD11 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: 7:151086814#2:176107588,reading-frame: in-frame,type: translocation,split_reads1: 3,split_reads2: 0,discordant_mates: 0,coverage1: 55,coverage2: 3,confidence: low | |
| P4HA1--TRIM25 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 10:73007478#17:56913711,reading-frame: .,type: translocation,split_reads1: 3,split_reads2: 0,discordant_mates: 0,coverage1: 11,coverage2: 3873,confidence: low | ||
| HAX1--SPTAN1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 1:154272776#9:128584721,reading-frame: out-of-frame,type: translocation,split_reads1: 0,split_reads2: 2,discordant_mates: 0,coverage1: 1834,coverage2: 1205,confidence: low | ||
| SNHG4--PARP8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 5:139278408#5:50815432,reading-frame: .,type: duplication,split_reads1: 0,split_reads2: 2,discordant_mates: 0,coverage1: 29,coverage2: 944,confidence: low | ||
| MATR3--PARP8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 5:139278408#5:50815432,reading-frame: .,type: duplication,split_reads1: 0,split_reads2: 2,discordant_mates: 0,coverage1: 29,coverage2: 944,confidence: low | ||
| RRAS2--TNFRSF13B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 11:14358763#17:16940511,reading-frame: out-of-frame,type: translocation,split_reads1: 1,split_reads2: 1,discordant_mates: 0,coverage1: 1885,coverage2: 2565,confidence: low | ||
| OR2T2--OR2T27 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 1:248449392#1:248650888,reading-frame: .,type: inversion,split_reads1: 0,split_reads2: 2,discordant_mates: 0,coverage1: 22,coverage2: 65,confidence: low | ||
| G3BP1--LARP1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 5:151772036#5:154790325,reading-frame: .,type: deletion,split_reads1: 0,split_reads2: 1,discordant_mates: 0,coverage1: 503,coverage2: 2587,confidence: low | ||
| LARP1--G3BP1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 5:154756193#5:151786572,reading-frame: out-of-frame,type: duplication,split_reads1: 1,split_reads2: 0,discordant_mates: 0,coverage1: 2550,coverage2: 956,confidence: low |
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