Processes

COPY_INPUT_TO_OUTDIR
1
RNAFUSION:CAT_FASTQ
RNAFUSION:SEQTK_SAMPLE
45 3 18
RNAFUSION:FASTQC
48 5
TRIM_WORKFLOW:FASTP
48 1
TRIM_WORKFLOW:FASTQC_FOR_FASTP
48 6
RNAFUSION:KALLISTO_INDEX
1 1
RNAFUSION:KALLISTO_QUANT
48 7
RNAFUSION:KALLISTO_TO_TX2GENE_QC
48
RNAFUSION:KALLISTO_TO_MULTIQC
48
RNAFUSION:GTF2BED
1
ARRIBA_WORKFLOW:STAR_FOR_ARRIBA
48 5
ARRIBA_WORKFLOW:ARRIBA
48 1
ARRIBA_WORKFLOW:ARRIBA_FILTER_SAME_GENE
48
ARRIBA_WORKFLOW:SAMTOOLS_SORT_FOR_ARRIBA
48
ARRIBA_WORKFLOW:SAMTOOLS_VIEW_FOR_ARRIBA
48 1
ARRIBA_WORKFLOW:SAMTOOLS_INDEX_FOR_ARRIBA
48
STARFUSION_WORKFLOW:STAR_FOR_STARFUSION
48 17
STARFUSION_WORKFLOW:SAMTOOLS_INDEX_FOR_STARFUSION
48
STARFUSION_WORKFLOW:SAMTOOLS_VIEW_FOR_STARFUSION
48
STARFUSION_WORKFLOW:SAMTOOLS_INDEX_FOR_STARFUSION_CRAM
48
STARFUSION_WORKFLOW:STARFUSION
48 8
STARFUSION_WORKFLOW:STARFUSION_FILTER
48
FUSIONREPORT_WORKFLOW:FUSIONREPORT
48
FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR
48 16
FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV
48
FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT
48
FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION
48
RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS
48 2
RNAFUSION:CANCER_INTRONS_TO_VCF
48
QC_WORKFLOW:GATK4_MARKDUPLICATES
48 1
QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS
48 18
QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS
48
BAM_RSEQC:RSEQC_BAMSTAT
48 4
BAM_RSEQC:RSEQC_INNERDISTANCE
48
BAM_RSEQC:RSEQC_INFEREXPERIMENT
48
BAM_RSEQC:RSEQC_JUNCTIONANNOTATION
48 5
BAM_RSEQC:RSEQC_JUNCTIONSATURATION
48 5
BAM_RSEQC:RSEQC_READDISTRIBUTION
48 5
BAM_RSEQC:RSEQC_READDUPLICATION
48 8
QC_WORKFLOW:SEQTOOL_QC
48 4
QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION
48
QC_WORKFLOW:SEQTOOL_TO_MULTIQC
48
QC_WORKFLOW:PRESEQ_LCEXTRAP
48 6
QC_WORKFLOW:PRESEQ_TO_MULTIQC
48
RNA_CONTAMINATION_DETECTION_WORKFLOW:NGSCheckMATE
48
RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES
48
RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION
48
RNAFUSION:CONTAMINATION_TO_MULTIQC
48
RNAFUSION:MULTIQC
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_JSON
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_TSV
1