Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
5,tih_rna_sample_00248_23H5VFLT4_s01,CTGATCGT-GCGCATAT,76685278,75071635,1613643,0,0.0193,0.9790,0.0210,0.0000
5,tih_rna_sample_00088_23H5VFLT4_s02,ACTCTCGA-CTGTACCA,102442615,100777808,1664807,0,0.0257,0.9837,0.0163,0.0000
5,tih_rna_sample_00251_23H5VFLT4_s03,TGAGCTAG-GAACGGTT,84329278,81954166,2375112,0,0.0212,0.9718,0.0282,0.0000
5,tih_rna_sample_00252_23H5VFLT4_s04,GAGACGAT-ACCGGTTA,77124608,75392715,1731893,0,0.0194,0.9775,0.0225,0.0000
5,tih_rna_sample_00254_23H5VFLT4_s05,CTTGTCGA-CGATGTTC,94339372,92574700,1764672,0,0.0237,0.9813,0.0187,0.0000
5,tih_rna_sample_00261_23H5VFLT4_s06,TTCCAAGG-CTACAAGG,71946074,70691121,1254953,0,0.0181,0.9826,0.0174,0.0000
5,tih_rna_sample_00235_23H5VFLT4_s07,CGCATGAT-AAGCCTGA,121438714,118951614,2487100,0,0.0305,0.9795,0.0205,0.0000
5,tih_rna_sample_00127_23H5VFLT4_s08,ACGGAACA-ACGAGAAC,57415145,56281460,1133685,0,0.0144,0.9803,0.0197,0.0000
5,tih_rna_sample_00272_23H5VFLT4_s09,CGGCTAAT-CTCGTTCT,89683758,88428685,1255073,0,0.0225,0.9860,0.0140,0.0000
5,tih_rna_sample_00218_23H5VFLT4_s10,ATCGATCG-TGGAAGCA,85818896,80453558,5365338,0,0.0216,0.9375,0.0625,0.0000
5,tih_rna_sample_00096_23H5VFLT4_s11,GCAAGATC-AGTCGAAG,76092282,74333201,1759081,0,0.0191,0.9769,0.0231,0.0000
5,tih_rna_sample_00097_23H5VFLT4_s12,GCTATCCT-AACAGGTG,90388623,88823531,1565092,0,0.0227,0.9827,0.0173,0.0000
5,V4_0001_RNA_0001_23H5VFLT4_s13,TACGCTAC-CGTGTGAT,93978155,91897520,2080635,0,0.0236,0.9779,0.0221,0.0000
5,tih_rna_sample_00274_23H5VFLT4_s14,TGGACTCT-TCTTACGG,49725777,48927564,798213,0,0.0125,0.9839,0.0161,0.0000
5,NTC_0001_0001_23H5VFLT4_s15,AGAGTAGC-AAGGCGTA,52817,51672,1145,0,0.0000,0.9783,0.0217,0.0000
5,tih_rna_sample_00220_23H5VFLT4_s16,ATCCAGAG-TAACGTCG,77007604,75207485,1800119,0,0.0194,0.9766,0.0234,0.0000
5,tih_rna_sample_00087_23H5VFLT4_s17,GACGATCT-TCGTGCAT,102563300,100600225,1963075,0,0.0258,0.9809,0.0191,0.0000
5,tih_rna_sample_00280_23H5VFLT4_s18,AACTGAGC-CAATCAGG,111793707,110013096,1780611,0,0.0281,0.9841,0.0159,0.0000
5,HD789_0002_RNA_0008_23H5VFLT4_s19,CTTAGGAC-ACTCCTAC,119718770,117385374,2333396,0,0.0301,0.9805,0.0195,0.0000
5,tih_rna_sample_00104_23H5VFLT4_s20,GTGCCATA-CTCCTAGT,52650626,51354957,1295669,0,0.0132,0.9754,0.0246,0.0000
5,tih_rna_sample_00105_23H5VFLT4_s21,GAATCCGA-AGCTAGTG,14167168,13859993,307175,0,0.0036,0.9783,0.0217,0.0000
5,tih_rna_sample_00388_23H5VFLT4_s22,TCGCTGTT-CAAGTCGT,134693439,132184446,2508993,0,0.0338,0.9814,0.0186,0.0000
5,tih_rna_sample_00377_23H5VFLT4_s23,TTCGTTGG-TACACACG,101089277,99145220,1944057,0,0.0254,0.9808,0.0192,0.0000
5,tih_rna_sample_00378_23H5VFLT4_s24,AAGCACTG-AGGTCAAC,44271208,43360073,911135,0,0.0111,0.9794,0.0206,0.0000
5,tih_rna_sample_00394_23H5VFLT4_s25,CCTTGATC-GATGGAGT,48846190,47954478,891712,0,0.0123,0.9817,0.0183,0.0000
5,tih_rna_sample_00396_23H5VFLT4_s26,GTCGAAGA-CCACATTG,104605841,102750466,1855375,0,0.0263,0.9823,0.0177,0.0000
5,tih_rna_sample_00400_23H5VFLT4_s27,ACCACGAT-GTCTGCAA,103269576,101293281,1976295,0,0.0259,0.9809,0.0191,0.0000
5,tih_rna_sample_00402_23H5VFLT4_s28,GATTACCG-TTGGACTG,97600751,95769337,1831414,0,0.0245,0.9812,0.0188,0.0000
5,tih_rna_sample_00403_23H5VFLT4_s29,GCACAACT-CTGAACGT,80711954,79286432,1425522,0,0.0203,0.9823,0.0177,0.0000
5,tih_rna_sample_00111_23H5VFLT4_s30,GCGTCATT-CAGACGTT,42600631,41663780,936851,0,0.0107,0.9780,0.0220,0.0000
5,tih_rna_sample_00124_23H5VFLT4_s31,ATCCGGTA-GACCGATA,87055662,85544185,1511477,0,0.0219,0.9826,0.0174,0.0000
5,tih_rna_sample_00090_23H5VFLT4_s32,CGTTGCAA-ATAGAGCG,87549843,85708656,1841187,0,0.0220,0.9790,0.0210,0.0000
5,tih_rna_sample_00407_23H5VFLT4_s33,GTGAAGTG-GAGCAATC,71464718,69940487,1524231,0,0.0180,0.9787,0.0213,0.0000
5,tih_rna_sample_00410_23H5VFLT4_s34,CATGGCTA-CACACATC,69571814,68553028,1018786,0,0.0175,0.9854,0.0146,0.0000
5,tih_rna_sample_00115_23H5VFLT4_s35,ATGCCTGT-AGATTGCG,62986872,61718286,1268586,0,0.0158,0.9799,0.0201,0.0000
5,tih_rna_sample_00116_23H5VFLT4_s36,CAACACCT-AGCTACCA,88176342,85950591,2225751,0,0.0222,0.9748,0.0252,0.0000
5,tih_rna_sample_00117_23H5VFLT4_s37,TGTGACTG-AGCCTATC,52374703,51063755,1310948,0,0.0132,0.9750,0.0250,0.0000
5,tih_rna_sample_00118_23H5VFLT4_s38,GTCATCGA-GATCCACT,83820047,82340798,1479249,0,0.0211,0.9824,0.0176,0.0000
5,tih_rna_sample_00089_23H5VFLT4_s39,AGCACTTC-ACGTCCAA,96656287,94461223,2195064,0,0.0243,0.9773,0.0227,0.0000
5,tih_rna_sample_00414_23H5VFLT4_s40,GAAGGAAG-GACGTCAT,90865787,88734539,2131248,0,0.0228,0.9765,0.0235,0.0000
5,tih_rna_sample_00121_23H5VFLT4_s41,GTTGTTCG-CCAACTTC,76845189,75595993,1249196,0,0.0193,0.9837,0.0163,0.0000
5,tih_rna_sample_00122_23H5VFLT4_s42,CGGTTGTT-GTGGTATG,53673966,52643095,1030871,0,0.0135,0.9808,0.0192,0.0000
5,tih_rna_sample_00163_23H5VFLT4_s43,ACTGAGGT-GTCAACAG,99403139,97282773,2120366,0,0.0250,0.9787,0.0213,0.0000
5,tih_rna_sample_00419_23H5VFLT4_s44,TGAAGACG-ACATGCCA,107346731,105035664,2311067,0,0.0270,0.9785,0.0215,0.0000
5,tih_rna_sample_00420_23H5VFLT4_s45,GTTACGCA-ATGGCGAT,49414409,48546963,867446,0,0.0124,0.9824,0.0176,0.0000
5,tih_rna_sample_00425_23H5VFLT4_s46,AGCGTGTT-CTTCGCAA,59281497,58173517,1107980,0,0.0149,0.9813,0.0187,0.0000
5,tih_rna_sample_00422_23H5VFLT4_s47,GATCGAGT-GACGAACT,22037867,21652366,385501,0,0.0055,0.9825,0.0175,0.0000
5,tih_rna_sample_00426_23H5VFLT4_s48,ACAGCTCA-TACTGCTC,72423252,71352400,1070852,0,0.0182,0.9852,0.0148,0.0000
5,Undetermined,,241714586,241714586,0,0,0.0607,1.0000,0.0000,0.0000