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BCL CONVERT QC REPORT - DETAILED
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1. % UNDETERMINED PER LANE
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%_Undetermined Undetermined_Reads Total_Reads
Lane
1 5.53 219191823 3964832817
2 5.68 226380649 3988663548
3 5.35 214021849 3997011677
4 5.16 205129324 3978308167
5 6.07 241714586 3979714145
6 6.20 247189192 3987606939
7 6.19 250759187 4049269221
8 6.60 268476578 4065832453
2. SAMPLES WITH LOW READS (NON-NTC)
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No samples found with low reads
3. NTC SAMPLES WITH HIGH READS
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No NTC samples found with high reads
4. TOP UNKNOWN BARCODES
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Found 120 significant unknown barcodes:
Lane index index2 # Reads % of Unknown Barcodes % of All Reads Percentage_of_Lane Percentage_of_Total
0 1 GAGCAGTA GGGGGGGG 5982235 0.027292 0.001509 0.150882 0.018688
1 1 CAGTCCAA GGGGGGGG 5499165 0.025088 0.001387 0.138699 0.017179
2 1 TGCTTCCA GGGGGGGG 5274755 0.024065 0.001330 0.133039 0.016478
3 1 GAACATCG GGGGGGGG 5031239 0.022954 0.001269 0.126897 0.015717
4 1 GATGTGTG GGGGGGGG 4522407 0.020632 0.001141 0.114063 0.014128
5 1 ATCACACG GGGGGGGG 4268044 0.019472 0.001076 0.107648 0.013333
6 1 ATCGCCAT GGGGGGGG 3552554 0.016208 0.000896 0.089602 0.011098
7 1 AGAACGAG GGGGGGGG 3338749 0.015232 0.000842 0.084209 0.010430
8 1 TGGTAGCT GGGGGGGG 3177342 0.014496 0.000801 0.080138 0.009926
9 1 TGGTACAG GGGGGGGG 3136301 0.014308 0.000791 0.079103 0.009797
10 1 CGCTCTAT GGGGGGGG 2943005 0.013427 0.000742 0.074228 0.009194
11 1 GAAGTTGG GGGGGGGG 2378934 0.010853 0.000600 0.060001 0.007432
12 1 GTTCTCGT GGGGGGGG 2360630 0.010770 0.000595 0.059539 0.007374
13 1 TCAGGCTT GGGGGGGG 2299139 0.010489 0.000580 0.057988 0.007182
14 1 AGTGGATC GGGGGGGG 2250457 0.010267 0.000568 0.056760 0.007030
15 1 CACTAGCT GGGGGGGG 2211125 0.010088 0.000558 0.055768 0.006907
16 2 GAGCAGTA GGGGGGGG 5513099 0.024353 0.001382 0.138219 0.017222
17 2 CAGTCCAA GGGGGGGG 5104065 0.022546 0.001280 0.127964 0.015945
18 2 TGCTTCCA GGGGGGGG 4776222 0.021098 0.001197 0.119745 0.014920
19 2 GAACATCG GGGGGGGG 4592942 0.020289 0.001151 0.115150 0.014348
20 2 GATGTGTG GGGGGGGG 4260080 0.018818 0.001068 0.106805 0.013308
21 2 ATCACACG GGGGGGGG 4122619 0.018211 0.001034 0.103358 0.012879
22 2 AGAACGAG GGGGGGGG 3344144 0.014772 0.000838 0.083841 0.010447
23 2 ATCGCCAT GGGGGGGG 3343801 0.014771 0.000838 0.083833 0.010446
24 2 TGGTAGCT GGGGGGGG 3038490 0.013422 0.000762 0.076178 0.009492
25 2 CGCTCTAT GGGGGGGG 2942485 0.012998 0.000738 0.073771 0.009192
26 2 TGGTACAG GGGGGGGG 2873995 0.012695 0.000721 0.072054 0.008978
27 2 TCAGGCTT GGGGGGGG 2611551 0.011536 0.000655 0.065474 0.008158
28 2 GTTCTCGT GGGGGGGG 2244897 0.009916 0.000563 0.056282 0.007013
29 2 GAAGTTGG GGGGGGGG 2165585 0.009566 0.000543 0.054293 0.006765
30 2 CACTAGCT GGGGGGGG 2035444 0.008991 0.000510 0.051031 0.006359
31 3 GAGCAGTA GGGGGGGG 5311402 0.024817 0.001329 0.132884 0.016592
32 3 CAGTCCAA GGGGGGGG 4915169 0.022966 0.001230 0.122971 0.015355
33 3 TGCTTCCA GGGGGGGG 4577195 0.021387 0.001145 0.114515 0.014299
34 3 GAACATCG GGGGGGGG 4413744 0.020623 0.001104 0.110426 0.013788
35 3 GATGTGTG GGGGGGGG 4072772 0.019030 0.001019 0.101895 0.012723
36 3 ATCACACG GGGGGGGG 3927139 0.018349 0.000983 0.098252 0.012268
37 3 ATCGCCAT GGGGGGGG 3192924 0.014919 0.000799 0.079883 0.009974
38 3 AGAACGAG GGGGGGGG 3129215 0.014621 0.000783 0.078289 0.009775
39 3 TGGTAGCT GGGGGGGG 2914023 0.013616 0.000729 0.072905 0.009103
40 3 CGCTCTAT GGGGGGGG 2802636 0.013095 0.000701 0.070118 0.008755
41 3 TGGTACAG GGGGGGGG 2748192 0.012841 0.000688 0.068756 0.008585
42 3 TCAGGCTT GGGGGGGG 2415965 0.011288 0.000604 0.060444 0.007547
43 3 GTTCTCGT GGGGGGGG 2153867 0.010064 0.000539 0.053887 0.006728
44 3 GAAGTTGG GGGGGGGG 2063310 0.009641 0.000516 0.051621 0.006446
45 4 GAGCAGTA GGGGGGGG 5160747 0.025159 0.001297 0.129722 0.016122
46 4 CAGTCCAA GGGGGGGG 4780548 0.023305 0.001202 0.120165 0.014934
47 4 TGCTTCCA GGGGGGGG 4448777 0.021688 0.001118 0.111826 0.013898
48 4 GAACATCG GGGGGGGG 4302038 0.020972 0.001081 0.108137 0.013439
49 4 GATGTGTG GGGGGGGG 3973106 0.019369 0.000999 0.099869 0.012412
50 4 ATCACACG GGGGGGGG 3810899 0.018578 0.000958 0.095792 0.011905
51 4 ATCGCCAT GGGGGGGG 3089021 0.015059 0.000776 0.077647 0.009650
52 4 AGAACGAG GGGGGGGG 3025031 0.014747 0.000760 0.076038 0.009450
53 4 TGGTAGCT GGGGGGGG 2824498 0.013769 0.000710 0.070997 0.008823
54 4 CGCTCTAT GGGGGGGG 2704721 0.013185 0.000680 0.067987 0.008449
55 4 TGGTACAG GGGGGGGG 2649484 0.012916 0.000666 0.066598 0.008277
56 4 TCAGGCTT GGGGGGGG 2311320 0.011268 0.000581 0.058098 0.007220
57 4 GTTCTCGT GGGGGGGG 2064572 0.010065 0.000519 0.051896 0.006450
58 4 GAAGTTGG GGGGGGGG 1990342 0.009703 0.000500 0.050030 0.006218
59 5 CGCATGAT GGGGGGGG 8801522 0.036413 0.002212 0.221160 0.027495
60 5 TACGCTAC GGGGGGGG 6451405 0.026690 0.001621 0.162107 0.020154
61 5 ACCACGAT GGGGGGGG 5928531 0.024527 0.001490 0.148969 0.018520
62 5 CTGATCGT GGGGGGGG 5834677 0.024139 0.001466 0.146610 0.018227
63 5 TGTGACTG GGGGGGGG 5328828 0.022046 0.001339 0.133900 0.016647
64 5 CTTGTCGA GGGGGGGG 5233395 0.021651 0.001315 0.131502 0.016349
65 5 GTGAAGTG GGGGGGGG 5156735 0.021334 0.001296 0.129576 0.016109
66 5 TCGCTGTT GGGGGGGG 4476660 0.018520 0.001125 0.112487 0.013985
67 5 ACTGAGGT GGGGGGGG 4111430 0.017009 0.001033 0.103310 0.012844
68 5 CAACACCT GGGGGGGG 4098179 0.016955 0.001030 0.102977 0.012802
69 5 GACGATCT GGGGGGGG 3311987 0.013702 0.000832 0.083222 0.010346
70 5 GCGTCATT GGGGGGGG 2971871 0.012295 0.000747 0.074675 0.009284
71 5 GCAAGATC GGGGGGGG 2552718 0.010561 0.000641 0.064143 0.007974
72 5 AGCACTTC GGGGGGGG 2035712 0.008422 0.000512 0.051152 0.006359
73 6 CGCATGAT GGGGGGGG 9502631 0.038443 0.002383 0.238304 0.029685
74 6 TACGCTAC GGGGGGGG 7016175 0.028384 0.001759 0.175950 0.021918
75 6 ACCACGAT GGGGGGGG 6288471 0.025440 0.001577 0.157700 0.019645
76 6 CTGATCGT GGGGGGGG 6264162 0.025342 0.001571 0.157091 0.019569
77 6 TGTGACTG GGGGGGGG 5825516 0.023567 0.001461 0.146091 0.018198
78 6 GTGAAGTG GGGGGGGG 5649857 0.022856 0.001417 0.141685 0.017650
79 6 CTTGTCGA GGGGGGGG 5549900 0.022452 0.001392 0.139179 0.017337
80 6 TCGCTGTT GGGGGGGG 4793311 0.019391 0.001202 0.120205 0.014974
81 6 ACTGAGGT GGGGGGGG 4439327 0.017959 0.001113 0.111328 0.013868
82 6 CAACACCT GGGGGGGG 4289838 0.017354 0.001076 0.107579 0.013401
83 6 GACGATCT GGGGGGGG 3539798 0.014320 0.000888 0.088770 0.011058
84 6 GCGTCATT GGGGGGGG 3164066 0.012800 0.000793 0.079347 0.009884
85 6 GCAAGATC GGGGGGGG 2752115 0.011134 0.000690 0.069017 0.008597
86 6 AGCACTTC GGGGGGGG 2143644 0.008672 0.000538 0.053758 0.006697
87 6 ATCGATCG GGGGGGGG 2030207 0.008213 0.000509 0.050913 0.006342
88 7 CGCATGAT GGGGGGGG 9863571 0.039335 0.002436 0.243589 0.030813
89 7 TACGCTAC GGGGGGGG 7415184 0.029571 0.001831 0.183124 0.023164
90 7 ACCACGAT GGGGGGGG 6549750 0.026120 0.001618 0.161751 0.020461
91 7 CTGATCGT GGGGGGGG 6523851 0.026016 0.001611 0.161112 0.020380
92 7 TGTGACTG GGGGGGGG 6146532 0.024512 0.001518 0.151794 0.019201
93 7 GTGAAGTG GGGGGGGG 5959502 0.023766 0.001472 0.147175 0.018617
94 7 CTTGTCGA GGGGGGGG 5679512 0.022649 0.001403 0.140260 0.017742
95 7 TCGCTGTT GGGGGGGG 5025259 0.020040 0.001241 0.124103 0.015698
96 7 ACTGAGGT GGGGGGGG 4682954 0.018675 0.001156 0.115649 0.014629
97 7 CAACACCT GGGGGGGG 4356898 0.017375 0.001076 0.107597 0.013611
98 7 GACGATCT GGGGGGGG 3654107 0.014572 0.000902 0.090241 0.011415
99 7 GCGTCATT GGGGGGGG 3285389 0.013102 0.000811 0.081135 0.010263
100 7 GCAAGATC GGGGGGGG 2864276 0.011422 0.000707 0.070736 0.008948
101 7 AGCACTTC GGGGGGGG 2205234 0.008794 0.000545 0.054460 0.006889
102 7 ATCGATCG GGGGGGGG 2169143 0.008650 0.000536 0.053569 0.006776
103 8 CGCATGAT GGGGGGGG 10889753 0.040561 0.002678 0.267836 0.034019
104 8 TACGCTAC GGGGGGGG 7971544 0.029692 0.001961 0.196062 0.024902
105 8 ACCACGAT GGGGGGGG 7225335 0.026912 0.001777 0.177709 0.022571
106 8 CTGATCGT GGGGGGGG 7126735 0.026545 0.001753 0.175284 0.022263
107 8 TGTGACTG GGGGGGGG 6808121 0.025358 0.001674 0.167447 0.021268
108 8 GTGAAGTG GGGGGGGG 6571214 0.024476 0.001616 0.161620 0.020528
109 8 CTTGTCGA GGGGGGGG 6351498 0.023658 0.001562 0.156216 0.019841
110 8 TCGCTGTT GGGGGGGG 5562058 0.020717 0.001368 0.136800 0.017375
111 8 ACTGAGGT GGGGGGGG 5093887 0.018973 0.001253 0.125285 0.015913
112 8 CAACACCT GGGGGGGG 4906339 0.018275 0.001207 0.120672 0.015327
113 8 GACGATCT GGGGGGGG 4010868 0.014939 0.000986 0.098648 0.012530
114 8 GCGTCATT GGGGGGGG 3677385 0.013697 0.000904 0.090446 0.011488
115 8 GCAAGATC GGGGGGGG 3128980 0.011655 0.000770 0.076958 0.009775
116 8 AGCACTTC GGGGGGGG 2421012 0.009018 0.000595 0.059545 0.007563
117 8 ATCGATCG GGGGGGGG 2367361 0.008818 0.000582 0.058226 0.007395
118 8 CGGTTGTT GGGGGGGG 2132731 0.007944 0.000525 0.052455 0.006662
119 8 GAGACGAT GGGGGGGG 2090156 0.007785 0.000514 0.051408 0.006529
5. BARCODES WITH HIGH MISMATCH RATES
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No barcodes found with high mismatch rates
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FINAL STATUS CHECK
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Overall % Undetermined: 5.85%
Status: WARNING
Reason(s):
Overall undetermined 5.85% >= 5.0%