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Filename
V4_0001_RNA_0001_23H5VFLT4_s13.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001_exp0003/B23H5VFLT4/nfcore_rnafusion__73d51683--20260607-225254/fusioninspector/V4_0001_RNA_0001_23H5VFLT4_s13.FusionInspector.fusions.abridged.tsv
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11.8 KB
Workflow Run
dev_rna_exp0001_exp0003_73d51683
Published
Jun 08, 2026 4:22 AM

Content

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 6029 14 6029.00 13.96 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 105 3513 57.02 1.72 GT 1.8892 AG 1.7819 20.3612 627 0
FGFR3--TACC3 8 9 8.00 0.01 FGFR3^ENSG00000068078.20 9872 chr4:1806928:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 356 3417 0.05 0.01 AC 1.8892 AG 1.7819 0.027 633 0
FGFR3--TACC3 6 14 6.00 0.01 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27591 chr4:1739703:+ INCL_NON_REF_SPLICE YES 12 3622 1.62 0.01 GA 1.8892 GG 1.7819 0.0202 625 0
FGFR3--TACC3 6 14 6.00 0.01 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 12 3638 1.62 0.01 GA 1.8892 TA 1.5219 0.0202 623 0
FGFR3--TACC3 3 0 3.00 0.00 FGFR3^ENSG00000068078.20 9556 chr4:1806612:+ TACC3^ENSG00000013810.20 27631 chr4:1739743:+ INCL_NON_REF_SPLICE YES 2356 4139 0.00 0.00 GT 1.7232 AG 1.9219 0.0101 494 0
TMPRSS2--ERG 3645 0 3645.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 9 108 364.60 33.45 GT 1.6895 AG 1.9219 12.2815 1104 0
LMNA--NTRK1 1687 13 1687.00 12.98 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 4934 408 0.34 4.16 GT 1.7465 AG 1.5058 5.7279 947 0
LMNA--NTRK1 3 9 3.00 0.02 LMNA^ENSG00000160789.23 17727 chr1:156130767:+ NTRK1^ENSG00000198400.13 40284 chr1:156874901:+ INCL_NON_REF_SPLICE YES 5097 305 0.00 0.04 GC 1.6402 CC 1.8892 0.0102 940 0
ETV6--NTRK3 1608 10 1608.00 9.98 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 3153 36 0.51 43.76 GT 1.7819 AG 1.9656 5.4516 1252 0
ETV6--NTRK3 4 8 4.00 0.02 ETV6^ENSG00000139083.11 11231 chr12:11869963:+ NTRK3^ENSG00000140538.16 46234 chr15:87940757:- INCL_NON_REF_SPLICE YES 3326 0 0.00 13.00 TA 1.9656 CT 1.9329 0.0136 1256 0
ETV6--NTRK3 1 0 1.00 0.00 ETV6^ENSG00000139083.11 9691 chr12:11853561:+ NTRK3^ENSG00000140538.16 40814 chr15:88033045:- ONLY_REF_SPLICE YES 2155 0 0.00 2.00 GT 1.6402 AG 1.8256 0.0034 1246 0
FGFR3--BAIAP2L1 1601 5 1601.00 5.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 108 77 14.74 20.60 GT 1.8892 AG 1.8062 5.4112 1171 0
TPM3--NTRK1 1452 9 1452.00 9.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 9217 56 0.16 25.65 GT 1.9329 AG 1.6895 4.9227 355 0
NCOA4--RET 1400 11 1400.00 11.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 3424 759 0.41 1.86 GT 1.9086 AG 1.8323 4.7543 5144 0
KIF5B--RET 1124 6 1124.00 5.99 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 1796 29 0.63 37.70 GT 1.9656 AG 1.9656 3.8074 3178 0
KIF5B--RET 3 5 3.00 0.01 KIF5B^ENSG00000170759.11 19975 chr10:32017145:- RET^ENSG00000165731.20 38862 chr10:43114510:+ INCL_NON_REF_SPLICE NO 1824 173 0.00 0.05 TG 1.9899 GG 1.9086 0.0101 3168 0
CCDC6--RET 1107 8 1107.00 7.98 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 2700 759 0.41 1.47 GT 1.8892 AG 1.8323 3.7569 2092 0
CCDC6--RET 3 8 3.00 0.02 CCDC6^ENSG00000108091.11 1434 chr10:59906123:- RET^ENSG00000165731.20 31587 chr10:43116584:+ INCL_NON_REF_SPLICE YES 3115 759 0.00 0.02 CG 1.9329 AG 1.8323 0.0102 2092 0
SLC34A2--ROS1 986 29 986.00 28.92 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 1 66 508.00 15.16 GT 1.8892 AG 1.7465 3.4197 999 0
SLC34A2--ROS1 3 16 3.00 0.05 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58028 chr6:117324412:- INCL_NON_REF_SPLICE YES 1 99 10.00 0.20 GA 1.7465 TG 1.8892 0.0103 1002 0
SLC34A2--ROS1 3 11 3.00 0.03 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58030 chr6:117324410:- INCL_NON_REF_SPLICE YES 1 122 7.50 0.12 GA 1.7465 AT 1.9086 0.0102 1004 0
SLC34A2--ROS1 4 0 4.00 0.00 SLC34A2^ENSG00000157765.13 4883 chr4:25662770:+ ROS1^ENSG00000047936.11 59193 chr6:117321310:- INCL_NON_REF_SPLICE YES 1127 1624 0.00 0.00 TA 1.8892 GC 1.8295 0.0135 2245 0
SLC34A2--ROS1 3 0 3.00 0.00 SLC34A2^ENSG00000157765.13 4896 chr4:25662783:+ ROS1^ENSG00000047936.11 60345 chr6:117319930:- INCL_NON_REF_SPLICE YES 1158 1887 0.00 0.00 TG 1.9329 TG 1.7968 0.0101 1113 0
EML4--ALK 944 1 944.00 1.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 691 56 1.37 16.60 GT 1.6895 AG 1.9086 3.1841 1550 0
CD74--ROS1 889 7 889.00 6.88 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 33440 66 0.03 13.39 GT 1.7819 AG 1.7465 3.0186 2407 0
CD74--ROS1 9 7 9.00 0.07 CD74^ENSG00000019582.16 4987 chr5:150404683:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE YES 36467 0 0.00 17.00 AA 1.8295 TT 1.5301 0.0305 2405 0
CD74--ROS1 4 7 4.00 0.03 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE YES 33440 0 0.00 12.00 GT 1.7819 TT 1.5301 0.0136 2408 0
CD74--ROS1 3 7 3.00 0.02 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 12652 chr6:117425920:- INCL_NON_REF_SPLICE NO 33440 0 0.00 11.00 GT 1.7819 TT 1.9656 0.0102 3298 0
CD74--ROS1 3 0 3.00 0.00 CD74^ENSG00000019582.16 4983 chr5:150404687:- ROS1^ENSG00000047936.11 49849 chr6:117321360:- INCL_NON_REF_SPLICE YES 37686 904 0.00 0.00 CC 1.7232 GC 1.6895 0.0101 1660 0
SLC45A3--BRAF 613 0 613.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 1 1774 307.00 0.35 GT 1.5628 AG 1.7465 2.0655 2599 0
TFG--NTRK1 540 4 540.00 4.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 2210 56 0.25 9.56 GT 1.9329 AG 1.6895 1.833 883 0
PAX8--PPARG 532 2 532.00 2.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 135 10 3.93 48.64 GT 1.8295 AG 1.9329 1.7992 1923 0
EGFR--SEPTIN14 396 11 396.00 11.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 24 26 16.32 15.11 GT 1.8892 AG 1.9899 1.3714 658 0
AC015911.9--SLFN12L 293 18 293.00 16.59 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 6142 chr17:35480195:- ONLY_REF_SPLICE YES 0 358 312.00 0.87 GT 1.9329 AG 1.8892 1.0431 533 0
AC015911.9--SLFN12L 119 4 119.00 1.10 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000286065.2 8152 chr17:35478185:- ONLY_REF_SPLICE YES 0 465 124.00 0.27 GT 1.9329 AG 1.9329 0.4047 1380 0
AC015911.9--SLFN12L 13 1 13.00 0.03 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 9263 chr17:35475485:- ONLY_REF_SPLICE YES 0 665 15.00 0.02 GT 1.9329 AG 1.7968 0.0439 508 0
AC015911.9--SLFN12L 5 18 5.00 0.28 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 4635 chr17:35487914:- INCL_NON_REF_SPLICE YES 0 0 24.00 24.00 GT 1.9329 AG 1.7819 0.0177 1749 0
AC015911.9--SLFN12L 3 0 3.00 0.00 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 12141 chr17:35464581:- ONLY_REF_SPLICE YES 0 9 4.00 0.40 GT 1.9329 AG 1.8323 0.0101 2111 0
AC015911.9--SLFN12L 1 0 1.00 0.00 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 12060 chr17:35464662:- ONLY_REF_SPLICE YES 0 12 2.00 0.15 GT 1.9329 AG 1.2419 0.0034 2031 0
STX16--NPEPL1 147 4 147.00 3.97 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1076 159 0.14 0.95 GT 1.7968 AG 1.8256 0.5087 1940 0
STX16--NPEPL1 5 1 5.00 0.03 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1167 159 0.01 0.04 GT 1.8062 AG 1.8256 0.0169 2729 0
STX16--NPEPL1 4 0 4.00 0.00 STX16^ENSG00000124222.22 1835 chr20:58652087:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 2304 159 0.00 0.03 GT 1.9899 AG 1.8256 0.0135 1258 0
TLK2--AC240565.1 55 0 55.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 529 36 0.11 1.51 GT 1.8892 AG 1.8892 0.1853 1734 0
TVP23C--CDRT4 48 0 48.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 151 7 0.32 6.12 GT 1.9329 AG 1.9899 0.1617 1215 0
TVP23C--CDRT4 23 0 23.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 558 7 0.04 3.00 GT 1.8323 AG 1.9899 0.0775 2126 0
TVP23C--CDRT4 18 0 18.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 558 29 0.03 0.63 GT 1.8323 AG 1.6402 0.0606 1363 0
TVP23C--CDRT4 14 0 14.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 151 29 0.10 0.50 GT 1.9329 AG 1.6402 0.0472 137 0
TVP23C--CDRT4 14 0 14.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 21 7 0.68 1.88 GT 1.8892 AG 1.9899 0.0472 1949 0
TVP23C--CDRT4 2 0 2.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 21 29 0.14 0.10 GT 1.8892 AG 1.6402 0.0067 873 0
BMS1P7--AGAP14P 27 0 27.00 0.00 BMS1P7^ENSG00000270025.2 7575 chr10:48050282:- AGAP14P^ENSG00000279058.2 10611 chr10:46337259:+ INCL_NON_REF_SPLICE YES 0 112 28.00 0.25 GT 1.7465 AG 1.9329 0.091 8406 0
BMS1P7--AGAP14P 3 0 3.00 0.00 BMS1P7^ENSG00000270025.2 7575 chr10:48050282:- AGAP14P^ENSG00000279058.2 10679 chr10:46337327:+ INCL_NON_REF_SPLICE YES 0 257 4.00 0.02 GT 1.7465 AG 1.6895 0.0101 8343 0
BMS1P7--AGAP14P 1 0 1.00 0.00 BMS1P7^ENSG00000270025.2 7575 chr10:48050282:- AGAP14P^ENSG00000279058.2 11168 chr10:46337816:+ ONLY_REF_SPLICE YES 0 111 2.00 0.02 GT 1.7465 AG 1.9219 0.0034 7892 0
NPM1--MT-RNR2 22 0 22.00 0.00 NPM1^ENSG00000181163.14 5684 chr5:171391799:+ MT-RNR2^ENSG00000210082.2 18922 chrM:1959:+ INCL_NON_REF_SPLICE YES 14106 0 0.00 23.00 GT 1.9656 AG 1.6895 0.0741 186 0
NPM1--MT-RNR2 7 0 7.00 0.00 NPM1^ENSG00000181163.14 6844 chr5:171392959:+ MT-RNR2^ENSG00000210082.2 18752 chrM:1789:+ INCL_NON_REF_SPLICE YES 17025 22 0.00 0.35 AA 1.8256 GC 1.2310 0.0236 327 0
NPM1--MT-RNR2 6 0 6.00 0.00 NPM1^ENSG00000181163.14 5261 chr5:171391376:+ MT-RNR2^ENSG00000210082.2 18696 chrM:1733:+ INCL_NON_REF_SPLICE YES 14904 0 0.00 7.00 CC 1.8892 AC 1.7232 0.0202 178 0
NPM1--MT-RNR2 5 0 5.00 0.00 NPM1^ENSG00000181163.14 6692 chr5:171392807:+ MT-RNR2^ENSG00000210082.2 19417 chrM:2454:+ INCL_NON_REF_SPLICE YES 16151 75 0.00 0.08 GT 1.6402 AG 1.2419 0.0168 106 0
NPM1--MT-RNR2 4 0 4.00 0.00 NPM1^ENSG00000181163.14 3973 chr5:171390088:+ MT-RNR2^ENSG00000210082.2 19412 chrM:2449:+ INCL_NON_REF_SPLICE YES 11363 59 0.00 0.08 GT 1.8323 AG 1.2419 0.0135 181 0
SOGA3--KIAA0408 13 1 13.00 1.00 SOGA3^ENSG00000214338.10 11088 chr6:127473080:- KIAA0408^ENSG00000189367.15 15731 chr6:127454101:- INCL_NON_REF_SPLICE YES 0 12 15.00 1.15 GT 1.6895 AG 1.7465 0.0472 176 0
SOGA3--KIAA0408 1 0 1.00 0.00 SOGA3^ENSG00000214338.10 9776 chr6:127475293:- KIAA0408^ENSG00000189367.15 15731 chr6:127454101:- ONLY_REF_SPLICE YES 248 12 0.01 0.15 GT 1.9656 AG 1.7465 0.0034 1093 0
60 rows