#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	6029	14	6029.00	13.96	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	105	3513	57.02	1.72	GT	1.8892	AG	1.7819	20.3612	627	0
FGFR3--TACC3	8	9	8.00	0.01	FGFR3^ENSG00000068078.20	9872	chr4:1806928:+	TACC3^ENSG00000013810.20	27587	chr4:1739699:+	INCL_NON_REF_SPLICE	YES	356	3417	0.05	0.01	AC	1.8892	AG	1.7819	0.027	633	0
FGFR3--TACC3	6	14	6.00	0.01	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27591	chr4:1739703:+	INCL_NON_REF_SPLICE	YES	12	3622	1.62	0.01	GA	1.8892	GG	1.7819	0.0202	625	0
FGFR3--TACC3	6	14	6.00	0.01	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27593	chr4:1739705:+	INCL_NON_REF_SPLICE	YES	12	3638	1.62	0.01	GA	1.8892	TA	1.5219	0.0202	623	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	9556	chr4:1806612:+	TACC3^ENSG00000013810.20	27631	chr4:1739743:+	INCL_NON_REF_SPLICE	YES	2356	4139	0.00	0.00	GT	1.7232	AG	1.9219	0.0101	494	0
TMPRSS2--ERG	3645	0	3645.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	9	108	364.60	33.45	GT	1.6895	AG	1.9219	12.2815	1104	0
LMNA--NTRK1	1687	13	1687.00	12.98	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	4934	408	0.34	4.16	GT	1.7465	AG	1.5058	5.7279	947	0
LMNA--NTRK1	3	9	3.00	0.02	LMNA^ENSG00000160789.23	17727	chr1:156130767:+	NTRK1^ENSG00000198400.13	40284	chr1:156874901:+	INCL_NON_REF_SPLICE	YES	5097	305	0.00	0.04	GC	1.6402	CC	1.8892	0.0102	940	0
ETV6--NTRK3	1608	10	1608.00	9.98	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	3153	36	0.51	43.76	GT	1.7819	AG	1.9656	5.4516	1252	0
ETV6--NTRK3	4	8	4.00	0.02	ETV6^ENSG00000139083.11	11231	chr12:11869963:+	NTRK3^ENSG00000140538.16	46234	chr15:87940757:-	INCL_NON_REF_SPLICE	YES	3326	0	0.00	13.00	TA	1.9656	CT	1.9329	0.0136	1256	0
ETV6--NTRK3	1	0	1.00	0.00	ETV6^ENSG00000139083.11	9691	chr12:11853561:+	NTRK3^ENSG00000140538.16	40814	chr15:88033045:-	ONLY_REF_SPLICE	YES	2155	0	0.00	2.00	GT	1.6402	AG	1.8256	0.0034	1246	0
FGFR3--BAIAP2L1	1601	5	1601.00	5.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	108	77	14.74	20.60	GT	1.8892	AG	1.8062	5.4112	1171	0
TPM3--NTRK1	1452	9	1452.00	9.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	9217	56	0.16	25.65	GT	1.9329	AG	1.6895	4.9227	355	0
NCOA4--RET	1400	11	1400.00	11.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	3424	759	0.41	1.86	GT	1.9086	AG	1.8323	4.7543	5144	0
KIF5B--RET	1124	6	1124.00	5.99	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	1796	29	0.63	37.70	GT	1.9656	AG	1.9656	3.8074	3178	0
KIF5B--RET	3	5	3.00	0.01	KIF5B^ENSG00000170759.11	19975	chr10:32017145:-	RET^ENSG00000165731.20	38862	chr10:43114510:+	INCL_NON_REF_SPLICE	NO	1824	173	0.00	0.05	TG	1.9899	GG	1.9086	0.0101	3168	0
CCDC6--RET	1107	8	1107.00	7.98	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	2700	759	0.41	1.47	GT	1.8892	AG	1.8323	3.7569	2092	0
CCDC6--RET	3	8	3.00	0.02	CCDC6^ENSG00000108091.11	1434	chr10:59906123:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	INCL_NON_REF_SPLICE	YES	3115	759	0.00	0.02	CG	1.9329	AG	1.8323	0.0102	2092	0
SLC34A2--ROS1	986	29	986.00	28.92	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	1	66	508.00	15.16	GT	1.8892	AG	1.7465	3.4197	999	0
SLC34A2--ROS1	3	16	3.00	0.05	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58028	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	1	99	10.00	0.20	GA	1.7465	TG	1.8892	0.0103	1002	0
SLC34A2--ROS1	3	11	3.00	0.03	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58030	chr6:117324410:-	INCL_NON_REF_SPLICE	YES	1	122	7.50	0.12	GA	1.7465	AT	1.9086	0.0102	1004	0
SLC34A2--ROS1	4	0	4.00	0.00	SLC34A2^ENSG00000157765.13	4883	chr4:25662770:+	ROS1^ENSG00000047936.11	59193	chr6:117321310:-	INCL_NON_REF_SPLICE	YES	1127	1624	0.00	0.00	TA	1.8892	GC	1.8295	0.0135	2245	0
SLC34A2--ROS1	3	0	3.00	0.00	SLC34A2^ENSG00000157765.13	4896	chr4:25662783:+	ROS1^ENSG00000047936.11	60345	chr6:117319930:-	INCL_NON_REF_SPLICE	YES	1158	1887	0.00	0.00	TG	1.9329	TG	1.7968	0.0101	1113	0
EML4--ALK	944	1	944.00	1.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	691	56	1.37	16.60	GT	1.6895	AG	1.9086	3.1841	1550	0
CD74--ROS1	889	7	889.00	6.88	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	33440	66	0.03	13.39	GT	1.7819	AG	1.7465	3.0186	2407	0
CD74--ROS1	9	7	9.00	0.07	CD74^ENSG00000019582.16	4987	chr5:150404683:-	ROS1^ENSG00000047936.11	48729	chr6:117324417:-	INCL_NON_REF_SPLICE	YES	36467	0	0.00	17.00	AA	1.8295	TT	1.5301	0.0305	2405	0
CD74--ROS1	4	7	4.00	0.03	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48729	chr6:117324417:-	INCL_NON_REF_SPLICE	YES	33440	0	0.00	12.00	GT	1.7819	TT	1.5301	0.0136	2408	0
CD74--ROS1	3	7	3.00	0.02	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	12652	chr6:117425920:-	INCL_NON_REF_SPLICE	NO	33440	0	0.00	11.00	GT	1.7819	TT	1.9656	0.0102	3298	0
CD74--ROS1	3	0	3.00	0.00	CD74^ENSG00000019582.16	4983	chr5:150404687:-	ROS1^ENSG00000047936.11	49849	chr6:117321360:-	INCL_NON_REF_SPLICE	YES	37686	904	0.00	0.00	CC	1.7232	GC	1.6895	0.0101	1660	0
SLC45A3--BRAF	613	0	613.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	1	1774	307.00	0.35	GT	1.5628	AG	1.7465	2.0655	2599	0
TFG--NTRK1	540	4	540.00	4.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	2210	56	0.25	9.56	GT	1.9329	AG	1.6895	1.833	883	0
PAX8--PPARG	532	2	532.00	2.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	135	10	3.93	48.64	GT	1.8295	AG	1.9329	1.7992	1923	0
EGFR--SEPTIN14	396	11	396.00	11.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	24	26	16.32	15.11	GT	1.8892	AG	1.9899	1.3714	658	0
AC015911.9--SLFN12L	293	18	293.00	16.59	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	6142	chr17:35480195:-	ONLY_REF_SPLICE	YES	0	358	312.00	0.87	GT	1.9329	AG	1.8892	1.0431	533	0
AC015911.9--SLFN12L	119	4	119.00	1.10	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000286065.2	8152	chr17:35478185:-	ONLY_REF_SPLICE	YES	0	465	124.00	0.27	GT	1.9329	AG	1.9329	0.4047	1380	0
AC015911.9--SLFN12L	13	1	13.00	0.03	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	9263	chr17:35475485:-	ONLY_REF_SPLICE	YES	0	665	15.00	0.02	GT	1.9329	AG	1.7968	0.0439	508	0
AC015911.9--SLFN12L	5	18	5.00	0.28	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	4635	chr17:35487914:-	INCL_NON_REF_SPLICE	YES	0	0	24.00	24.00	GT	1.9329	AG	1.7819	0.0177	1749	0
AC015911.9--SLFN12L	3	0	3.00	0.00	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	12141	chr17:35464581:-	ONLY_REF_SPLICE	YES	0	9	4.00	0.40	GT	1.9329	AG	1.8323	0.0101	2111	0
AC015911.9--SLFN12L	1	0	1.00	0.00	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	12060	chr17:35464662:-	ONLY_REF_SPLICE	YES	0	12	2.00	0.15	GT	1.9329	AG	1.2419	0.0034	2031	0
STX16--NPEPL1	147	4	147.00	3.97	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1076	159	0.14	0.95	GT	1.7968	AG	1.8256	0.5087	1940	0
STX16--NPEPL1	5	1	5.00	0.03	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1167	159	0.01	0.04	GT	1.8062	AG	1.8256	0.0169	2729	0
STX16--NPEPL1	4	0	4.00	0.00	STX16^ENSG00000124222.22	1835	chr20:58652087:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	2304	159	0.00	0.03	GT	1.9899	AG	1.8256	0.0135	1258	0
TLK2--AC240565.1	55	0	55.00	0.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	AC240565.1^ENSG00000280136.2	41242	chr17:106864:-	ONLY_REF_SPLICE	YES	529	36	0.11	1.51	GT	1.8892	AG	1.8892	0.1853	1734	0
TVP23C--CDRT4	48	0	48.00	0.00	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	INCL_NON_REF_SPLICE	YES	151	7	0.32	6.12	GT	1.9329	AG	1.9899	0.1617	1215	0
TVP23C--CDRT4	23	0	23.00	0.00	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	558	7	0.04	3.00	GT	1.8323	AG	1.9899	0.0775	2126	0
TVP23C--CDRT4	18	0	18.00	0.00	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	ONLY_REF_SPLICE	YES	558	29	0.03	0.63	GT	1.8323	AG	1.6402	0.0606	1363	0
TVP23C--CDRT4	14	0	14.00	0.00	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	INCL_NON_REF_SPLICE	YES	151	29	0.10	0.50	GT	1.9329	AG	1.6402	0.0472	137	0
TVP23C--CDRT4	14	0	14.00	0.00	TVP23C^ENSG00000175106.17	12676	chr17:15516419:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	21	7	0.68	1.88	GT	1.8892	AG	1.9899	0.0472	1949	0
TVP23C--CDRT4	2	0	2.00	0.00	TVP23C^ENSG00000175106.17	12676	chr17:15516419:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	ONLY_REF_SPLICE	YES	21	29	0.14	0.10	GT	1.8892	AG	1.6402	0.0067	873	0
BMS1P7--AGAP14P	27	0	27.00	0.00	BMS1P7^ENSG00000270025.2	7575	chr10:48050282:-	AGAP14P^ENSG00000279058.2	10611	chr10:46337259:+	INCL_NON_REF_SPLICE	YES	0	112	28.00	0.25	GT	1.7465	AG	1.9329	0.091	8406	0
BMS1P7--AGAP14P	3	0	3.00	0.00	BMS1P7^ENSG00000270025.2	7575	chr10:48050282:-	AGAP14P^ENSG00000279058.2	10679	chr10:46337327:+	INCL_NON_REF_SPLICE	YES	0	257	4.00	0.02	GT	1.7465	AG	1.6895	0.0101	8343	0
BMS1P7--AGAP14P	1	0	1.00	0.00	BMS1P7^ENSG00000270025.2	7575	chr10:48050282:-	AGAP14P^ENSG00000279058.2	11168	chr10:46337816:+	ONLY_REF_SPLICE	YES	0	111	2.00	0.02	GT	1.7465	AG	1.9219	0.0034	7892	0
NPM1--MT-RNR2	22	0	22.00	0.00	NPM1^ENSG00000181163.14	5684	chr5:171391799:+	MT-RNR2^ENSG00000210082.2	18922	chrM:1959:+	INCL_NON_REF_SPLICE	YES	14106	0	0.00	23.00	GT	1.9656	AG	1.6895	0.0741	186	0
NPM1--MT-RNR2	7	0	7.00	0.00	NPM1^ENSG00000181163.14	6844	chr5:171392959:+	MT-RNR2^ENSG00000210082.2	18752	chrM:1789:+	INCL_NON_REF_SPLICE	YES	17025	22	0.00	0.35	AA	1.8256	GC	1.2310	0.0236	327	0
NPM1--MT-RNR2	6	0	6.00	0.00	NPM1^ENSG00000181163.14	5261	chr5:171391376:+	MT-RNR2^ENSG00000210082.2	18696	chrM:1733:+	INCL_NON_REF_SPLICE	YES	14904	0	0.00	7.00	CC	1.8892	AC	1.7232	0.0202	178	0
NPM1--MT-RNR2	5	0	5.00	0.00	NPM1^ENSG00000181163.14	6692	chr5:171392807:+	MT-RNR2^ENSG00000210082.2	19417	chrM:2454:+	INCL_NON_REF_SPLICE	YES	16151	75	0.00	0.08	GT	1.6402	AG	1.2419	0.0168	106	0
NPM1--MT-RNR2	4	0	4.00	0.00	NPM1^ENSG00000181163.14	3973	chr5:171390088:+	MT-RNR2^ENSG00000210082.2	19412	chrM:2449:+	INCL_NON_REF_SPLICE	YES	11363	59	0.00	0.08	GT	1.8323	AG	1.2419	0.0135	181	0
SOGA3--KIAA0408	13	1	13.00	1.00	SOGA3^ENSG00000214338.10	11088	chr6:127473080:-	KIAA0408^ENSG00000189367.15	15731	chr6:127454101:-	INCL_NON_REF_SPLICE	YES	0	12	15.00	1.15	GT	1.6895	AG	1.7465	0.0472	176	0
SOGA3--KIAA0408	1	0	1.00	0.00	SOGA3^ENSG00000214338.10	9776	chr6:127475293:-	KIAA0408^ENSG00000189367.15	15731	chr6:127454101:-	ONLY_REF_SPLICE	YES	248	12	0.01	0.15	GT	1.9656	AG	1.7465	0.0034	1093	0