#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	2135	2	2135.00	2.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	28	1468	73.72	1.46	GT	1.8892	AG	1.7819	7.2783	627	0
FGFR3--TACC3	5	0	5.00	0.00	FGFR3^ENSG00000068078.20	9511	chr4:1806567:+	TACC3^ENSG00000013810.20	27632	chr4:1739744:+	INCL_NON_REF_SPLICE	YES	382	1936	0.02	0.00	TG	1.5656	GG	1.9656	0.017	450	0
FGFR3--TACC3	3	2	3.00	0.00	FGFR3^ENSG00000068078.20	9882	chr4:1806938:+	TACC3^ENSG00000013810.20	27596	chr4:1739708:+	INCL_NON_REF_SPLICE	YES	14	1649	0.40	0.00	GT	1.8892	AG	1.5058	0.0102	620	0
TMPRSS2--ERG	1330	0	1330.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	1	32	665.50	40.33	GT	1.6895	AG	1.9219	4.5298	1104	0
FGFR3--BAIAP2L1	572	3	572.00	3.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	29	26	19.20	21.33	GT	1.8892	AG	1.8062	1.9584	1171	0
LMNA--NTRK1	466	4	466.00	4.00	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	1697	84	0.28	5.54	GT	1.7465	AG	1.5058	1.6007	947	0
ETV6--NTRK3	423	0	423.00	0.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	1350	3	0.31	106.00	GT	1.7819	AG	1.9656	1.4407	1252	0
TPM3--NTRK1	406	1	406.00	1.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	4889	8	0.08	45.33	GT	1.9329	AG	1.6895	1.3862	355	0
KIF5B--RET	296	1	296.00	1.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	701	6	0.42	42.57	GT	1.9656	AG	1.9656	1.0115	3178	0
NCOA4--RET	292	0	292.00	0.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	1222	93	0.24	3.12	GT	1.9086	AG	1.8323	0.9945	5144	0
SLC34A2--ROS1	285	3	285.00	3.00	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	11	289.00	24.08	GT	1.8892	AG	1.7465	0.9809	999	0
CD74--ROS1	283	1	283.00	1.00	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	20268	11	0.01	23.75	GT	1.7819	AG	1.7465	0.9673	2407	0
CD74--ROS1	4	0	4.00	0.00	CD74^ENSG00000019582.16	4989	chr5:150404681:-	ROS1^ENSG00000047936.11	48790	chr6:117324356:-	INCL_NON_REF_SPLICE	YES	22437	77	0.00	0.06	GG	1.7819	TG	1.9329	0.0136	2379	0
CCDC6--RET	280	0	280.00	0.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	1163	93	0.24	2.99	GT	1.8892	AG	1.8323	0.9536	2092	0
EML4--ALK	187	0	187.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	302	15	0.62	11.75	GT	1.6895	AG	1.9086	0.6369	1550	0
TFG--NTRK1	174	1	174.00	1.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	616	8	0.29	19.56	GT	1.9329	AG	1.6895	0.596	883	0
PAX8--PPARG	159	0	159.00	0.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	56	13	2.81	11.43	GT	1.8295	AG	1.9329	0.5415	1923	0
SLC45A3--BRAF	148	0	148.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	1	820	74.50	0.18	GT	1.5628	AG	1.7465	0.5041	2599	0
STX16--NPEPL1	132	4	132.00	3.96	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	774	104	0.18	1.30	GT	1.7968	AG	1.8256	0.4631	1940	0
STX16--NPEPL1	3	2	3.00	0.04	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	873	104	0.01	0.06	GT	1.8062	AG	1.8256	0.0103	2729	0
EGFR--SEPTIN14	122	1	122.00	1.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	4	18	24.80	6.53	GT	1.8892	AG	1.9899	0.4189	658	0
TLK2--AC240565.1	74	0	74.00	0.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	AC240565.1^ENSG00000280136.2	41242	chr17:106864:-	ONLY_REF_SPLICE	YES	275	36	0.27	2.03	GT	1.8892	AG	1.8892	0.252	1734	0
TVP23C--CDRT4	47	3	47.00	2.79	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	INCL_NON_REF_SPLICE	YES	121	2	0.42	17.00	GT	1.9329	AG	1.9899	0.1696	1215	0
TVP23C--CDRT4	14	0	14.00	0.00	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	INCL_NON_REF_SPLICE	YES	121	33	0.12	0.44	GT	1.9329	AG	1.6402	0.0477	137	0
TVP23C--CDRT4	8	1	8.00	0.13	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	289	2	0.03	3.33	GT	1.8323	AG	1.9899	0.0276	2126	0
TVP23C--CDRT4	5	1	5.00	0.08	TVP23C^ENSG00000175106.17	12676	chr17:15516419:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	23	2	0.29	2.33	GT	1.8892	AG	1.9899	0.0173	1949	0
TVP23C--CDRT4	3	0	3.00	0.00	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	ONLY_REF_SPLICE	YES	289	33	0.01	0.12	GT	1.8323	AG	1.6402	0.0102	1363	0