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V4_0001_RNA_0005_23H5VFLT4_s41.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001_exp0003/B23H5VFLT4/nfcore_rnafusion__73d51683--20260607-225254/fusioninspector/V4_0001_RNA_0005_23H5VFLT4_s41.FusionInspector.fusions.abridged.tsv
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7.5 KB
Workflow Run
dev_rna_exp0001_exp0003_73d51683
Published
Jun 08, 2026 4:31 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 6035 10 6035.00 9.97 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 79 1452 75.58 4.16 GT 1.8892 AG 1.7819 20.5865 627 0
FGFR3--TACC3 12 3 12.00 0.01 FGFR3^ENSG00000068078.20 9882 chr4:1806938:+ TACC3^ENSG00000013810.20 27638 chr4:1739750:+ INCL_NON_REF_SPLICE YES 15 1736 1.00 0.01 GT 1.8892 AG 1.8062 0.0409 583 0
FGFR3--TACC3 9 10 9.00 0.01 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 22063 chr4:1730798:+ INCL_NON_REF_SPLICE NO 79 1470 0.25 0.01 GT 1.8892 AG 1.6895 0.0306 1411 0
FGFR3--TACC3 6 10 6.00 0.01 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 15 1483 1.06 0.01 GA 1.8892 TA 1.5219 0.0204 623 0
TMPRSS2--ERG 4011 0 4011.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 7 66 501.50 59.88 GT 1.6895 AG 1.9219 13.6596 1104 0
FGFR3--BAIAP2L1 1541 0 1541.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 83 25 18.36 59.31 GT 1.8892 AG 1.8062 5.2479 1171 0
LMNA--NTRK1 1483 8 1483.00 7.99 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 2894 258 0.52 5.76 GT 1.7465 AG 1.5058 5.0776 947 0
LMNA--NTRK1 3 6 3.00 0.01 LMNA^ENSG00000160789.23 17734 chr1:156130774:+ NTRK1^ENSG00000198400.13 40292 chr1:156874909:+ INCL_NON_REF_SPLICE YES 2894 283 0.00 0.04 TG 1.7465 TC 1.4566 0.0102 949 0
TPM3--NTRK1 1400 0 1400.00 0.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 4910 24 0.29 56.04 GT 1.9329 AG 1.6895 4.7678 355 0
ETV6--NTRK3 1238 3 1238.00 2.99 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 1476 12 0.84 95.54 GT 1.7819 AG 1.9656 4.2263 1252 0
ETV6--NTRK3 6 3 6.00 0.01 ETV6^ENSG00000139083.11 11235 chr12:11869967:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- INCL_NON_REF_SPLICE NO 1532 12 0.01 0.77 AG 1.9086 AG 1.9656 0.0204 1252 0
NCOA4--RET 1086 3 1086.00 3.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 1649 273 0.66 3.98 GT 1.9086 AG 1.8323 3.7086 5144 0
CCDC6--RET 1002 5 1002.00 5.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 1232 273 0.82 3.68 GT 1.8892 AG 1.8323 3.4294 2092 0
KIF5B--RET 912 6 912.00 6.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 832 11 1.10 76.58 GT 1.9656 AG 1.9656 3.1263 3178 0
EML4--ALK 880 0 880.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 324 49 2.71 17.62 GT 1.6895 AG 1.9086 2.9969 1550 0
CD74--ROS1 675 4 675.00 3.94 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 17289 39 0.04 17.00 GT 1.7819 AG 1.7465 2.3121 2407 0
CD74--ROS1 6 4 6.00 0.04 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 12652 chr6:117425920:- INCL_NON_REF_SPLICE NO 17289 0 0.00 11.00 GT 1.7819 TT 1.9656 0.0205 3298 0
CD74--ROS1 4 4 4.00 0.02 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 17301 41 0.00 0.21 AC 1.9329 GA 1.8295 0.0137 2408 0
SLC34A2--ROS1 641 18 641.00 17.80 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 38 660.00 16.92 GT 1.8892 AG 1.7465 2.2436 999 0
SLC34A2--ROS1 6 15 6.00 0.14 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58028 chr6:117324412:- INCL_NON_REF_SPLICE YES 0 49 22.00 0.44 GA 1.7465 TG 1.8892 0.0209 1002 0
SLC34A2--ROS1 3 14 3.00 0.06 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58030 chr6:117324410:- INCL_NON_REF_SPLICE YES 0 66 18.00 0.27 GA 1.7465 AT 1.9086 0.0104 1004 0
PAX8--PPARG 489 2 489.00 1.99 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 42 7 11.44 61.50 GT 1.8295 AG 1.9329 1.6721 1923 0
PAX8--PPARG 10 0 10.00 0.00 PAX8^ENSG00000125618.18 9656 chr2:113235452:- PPARG^ENSG00000132170.23 32697 chr3:12381387:+ INCL_NON_REF_SPLICE YES 81 69 0.13 0.16 GC 1.7968 AG 1.9656 0.0341 2338 0
PAX8--PPARG 3 1 3.00 0.01 PAX8^ENSG00000125618.18 9704 chr2:113235404:- PPARG^ENSG00000132170.23 31395 chr3:12379695:+ INCL_NON_REF_SPLICE YES 53 6 0.09 0.71 CT 1.8323 TT 1.9086 0.0102 1933 0
TFG--NTRK1 463 0 463.00 0.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 945 24 0.49 18.56 GT 1.9329 AG 1.6895 1.5768 883 0
EGFR--SEPTIN14 457 0 457.00 0.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 7 18 57.25 24.11 GT 1.8892 AG 1.9899 1.5563 658 0
SLC45A3--BRAF 344 0 344.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 758 345.00 0.45 GT 1.5628 AG 1.7465 1.1715 2599 0
STX16--NPEPL1 112 3 112.00 2.99 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 723 115 0.16 1.00 GT 1.7968 AG 1.8256 0.3916 1940 0
STX16--NPEPL1 1 1 1.00 0.01 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 795 115 0.00 0.03 GT 1.8062 AG 1.8256 0.0034 2729 0
STX16--NPEPL1 1 0 1.00 0.00 STX16^ENSG00000124222.22 1886 chr20:58652138:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1353 115 0.00 0.02 GT 1.9329 AG 1.8256 0.0034 1285 0
TVP23C--CDRT4 42 1 42.00 0.40 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 83 5 0.52 7.33 GT 1.9329 AG 1.9899 0.1444 1215 0
TVP23C--CDRT4 28 1 28.00 0.26 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 83 18 0.36 1.58 GT 1.9329 AG 1.6402 0.0963 137 0
TVP23C--CDRT4 24 1 24.00 0.23 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 302 5 0.09 4.33 GT 1.8323 AG 1.9899 0.0825 2126 0
TVP23C--CDRT4 9 1 9.00 0.08 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 36 5 0.30 1.83 GT 1.8892 AG 1.9899 0.0309 1949 0
TVP23C--CDRT4 2 1 2.00 0.02 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 36 18 0.11 0.21 GT 1.8892 AG 1.6402 0.0069 873 0
TVP23C--CDRT4 1 1 1.00 0.01 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 302 18 0.01 0.16 GT 1.8323 AG 1.6402 0.0034 1363 0
TLK2--AC240565.1 42 0 42.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 290 24 0.15 1.72 GT 1.8892 AG 1.8892 0.143 1734 0
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