#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	6035	10	6035.00	9.97	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	79	1452	75.58	4.16	GT	1.8892	AG	1.7819	20.5865	627	0
FGFR3--TACC3	12	3	12.00	0.01	FGFR3^ENSG00000068078.20	9882	chr4:1806938:+	TACC3^ENSG00000013810.20	27638	chr4:1739750:+	INCL_NON_REF_SPLICE	YES	15	1736	1.00	0.01	GT	1.8892	AG	1.8062	0.0409	583	0
FGFR3--TACC3	9	10	9.00	0.01	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22063	chr4:1730798:+	INCL_NON_REF_SPLICE	NO	79	1470	0.25	0.01	GT	1.8892	AG	1.6895	0.0306	1411	0
FGFR3--TACC3	6	10	6.00	0.01	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27593	chr4:1739705:+	INCL_NON_REF_SPLICE	YES	15	1483	1.06	0.01	GA	1.8892	TA	1.5219	0.0204	623	0
TMPRSS2--ERG	4011	0	4011.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	7	66	501.50	59.88	GT	1.6895	AG	1.9219	13.6596	1104	0
FGFR3--BAIAP2L1	1541	0	1541.00	0.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	83	25	18.36	59.31	GT	1.8892	AG	1.8062	5.2479	1171	0
LMNA--NTRK1	1483	8	1483.00	7.99	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	2894	258	0.52	5.76	GT	1.7465	AG	1.5058	5.0776	947	0
LMNA--NTRK1	3	6	3.00	0.01	LMNA^ENSG00000160789.23	17734	chr1:156130774:+	NTRK1^ENSG00000198400.13	40292	chr1:156874909:+	INCL_NON_REF_SPLICE	YES	2894	283	0.00	0.04	TG	1.7465	TC	1.4566	0.0102	949	0
TPM3--NTRK1	1400	0	1400.00	0.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	4910	24	0.29	56.04	GT	1.9329	AG	1.6895	4.7678	355	0
ETV6--NTRK3	1238	3	1238.00	2.99	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	1476	12	0.84	95.54	GT	1.7819	AG	1.9656	4.2263	1252	0
ETV6--NTRK3	6	3	6.00	0.01	ETV6^ENSG00000139083.11	11235	chr12:11869967:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	INCL_NON_REF_SPLICE	NO	1532	12	0.01	0.77	AG	1.9086	AG	1.9656	0.0204	1252	0
NCOA4--RET	1086	3	1086.00	3.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	1649	273	0.66	3.98	GT	1.9086	AG	1.8323	3.7086	5144	0
CCDC6--RET	1002	5	1002.00	5.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	1232	273	0.82	3.68	GT	1.8892	AG	1.8323	3.4294	2092	0
KIF5B--RET	912	6	912.00	6.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	832	11	1.10	76.58	GT	1.9656	AG	1.9656	3.1263	3178	0
EML4--ALK	880	0	880.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	324	49	2.71	17.62	GT	1.6895	AG	1.9086	2.9969	1550	0
CD74--ROS1	675	4	675.00	3.94	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	17289	39	0.04	17.00	GT	1.7819	AG	1.7465	2.3121	2407	0
CD74--ROS1	6	4	6.00	0.04	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	12652	chr6:117425920:-	INCL_NON_REF_SPLICE	NO	17289	0	0.00	11.00	GT	1.7819	TT	1.9656	0.0205	3298	0
CD74--ROS1	4	4	4.00	0.02	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48732	chr6:117324414:-	INCL_NON_REF_SPLICE	YES	17301	41	0.00	0.21	AC	1.9329	GA	1.8295	0.0137	2408	0
SLC34A2--ROS1	641	18	641.00	17.80	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	38	660.00	16.92	GT	1.8892	AG	1.7465	2.2436	999	0
SLC34A2--ROS1	6	15	6.00	0.14	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58028	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	0	49	22.00	0.44	GA	1.7465	TG	1.8892	0.0209	1002	0
SLC34A2--ROS1	3	14	3.00	0.06	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58030	chr6:117324410:-	INCL_NON_REF_SPLICE	YES	0	66	18.00	0.27	GA	1.7465	AT	1.9086	0.0104	1004	0
PAX8--PPARG	489	2	489.00	1.99	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	42	7	11.44	61.50	GT	1.8295	AG	1.9329	1.6721	1923	0
PAX8--PPARG	10	0	10.00	0.00	PAX8^ENSG00000125618.18	9656	chr2:113235452:-	PPARG^ENSG00000132170.23	32697	chr3:12381387:+	INCL_NON_REF_SPLICE	YES	81	69	0.13	0.16	GC	1.7968	AG	1.9656	0.0341	2338	0
PAX8--PPARG	3	1	3.00	0.01	PAX8^ENSG00000125618.18	9704	chr2:113235404:-	PPARG^ENSG00000132170.23	31395	chr3:12379695:+	INCL_NON_REF_SPLICE	YES	53	6	0.09	0.71	CT	1.8323	TT	1.9086	0.0102	1933	0
TFG--NTRK1	463	0	463.00	0.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	945	24	0.49	18.56	GT	1.9329	AG	1.6895	1.5768	883	0
EGFR--SEPTIN14	457	0	457.00	0.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	7	18	57.25	24.11	GT	1.8892	AG	1.9899	1.5563	658	0
SLC45A3--BRAF	344	0	344.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	0	758	345.00	0.45	GT	1.5628	AG	1.7465	1.1715	2599	0
STX16--NPEPL1	112	3	112.00	2.99	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	723	115	0.16	1.00	GT	1.7968	AG	1.8256	0.3916	1940	0
STX16--NPEPL1	1	1	1.00	0.01	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	795	115	0.00	0.03	GT	1.8062	AG	1.8256	0.0034	2729	0
STX16--NPEPL1	1	0	1.00	0.00	STX16^ENSG00000124222.22	1886	chr20:58652138:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1353	115	0.00	0.02	GT	1.9329	AG	1.8256	0.0034	1285	0
TVP23C--CDRT4	42	1	42.00	0.40	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	INCL_NON_REF_SPLICE	YES	83	5	0.52	7.33	GT	1.9329	AG	1.9899	0.1444	1215	0
TVP23C--CDRT4	28	1	28.00	0.26	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	INCL_NON_REF_SPLICE	YES	83	18	0.36	1.58	GT	1.9329	AG	1.6402	0.0963	137	0
TVP23C--CDRT4	24	1	24.00	0.23	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	302	5	0.09	4.33	GT	1.8323	AG	1.9899	0.0825	2126	0
TVP23C--CDRT4	9	1	9.00	0.08	TVP23C^ENSG00000175106.17	12676	chr17:15516419:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	36	5	0.30	1.83	GT	1.8892	AG	1.9899	0.0309	1949	0
TVP23C--CDRT4	2	1	2.00	0.02	TVP23C^ENSG00000175106.17	12676	chr17:15516419:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	ONLY_REF_SPLICE	YES	36	18	0.11	0.21	GT	1.8892	AG	1.6402	0.0069	873	0
TVP23C--CDRT4	1	1	1.00	0.01	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	ONLY_REF_SPLICE	YES	302	18	0.01	0.16	GT	1.8323	AG	1.6402	0.0034	1363	0
TLK2--AC240565.1	42	0	42.00	0.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	AC240565.1^ENSG00000280136.2	41242	chr17:106864:-	ONLY_REF_SPLICE	YES	290	24	0.15	1.72	GT	1.8892	AG	1.8892	0.143	1734	0