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V4_0001_RNA_0005_23H5VFLT4_s10.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001_exp0003/B23H5VFLT4/nfcore_rnafusion__73d51683--20260607-225254/fusioninspector/V4_0001_RNA_0005_23H5VFLT4_s10.FusionInspector.fusions.abridged.tsv
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7.3 KB
Workflow Run
dev_rna_exp0001_exp0003_73d51683
Published
Jun 08, 2026 4:37 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 4620 0 4620.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 84 2069 54.36 2.23 GT 1.8892 AG 1.7819 15.6929 627 0
FGFR3--TACC3 23 0 23.00 0.00 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 37 2106 0.63 0.01 GA 1.8892 TA 1.5219 0.0781 623 0
FGFR3--TACC3 3 0 3.00 0.00 FGFR3^ENSG00000068078.20 9863 chr4:1806919:+ TACC3^ENSG00000013810.20 27596 chr4:1739708:+ INCL_NON_REF_SPLICE YES 255 2194 0.02 0.00 GT 1.8892 AG 1.5058 0.0102 629 0
TMPRSS2--ERG 3523 0 3523.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 6 71 503.43 48.94 GT 1.6895 AG 1.9219 11.9667 1104 0
TMPRSS2--ERG 10 0 10.00 0.00 TMPRSS2^ENSG00000184012.14 4654 chr21:41508079:- ERG^ENSG00000157554.19 28752 chr21:38584944:- INCL_NON_REF_SPLICE YES 0 72 11.00 0.15 GA 1.7232 GG 1.8295 0.034 1105 0
TMPRSS2--ERG 3 0 3.00 0.00 TMPRSS2^ENSG00000184012.14 4646 chr21:41508087:- ERG^ENSG00000157554.19 28747 chr21:38584949:- INCL_NON_REF_SPLICE YES 8 0 0.44 4.00 CG 1.5628 AT 1.9656 0.0102 1100 0
FGFR3--BAIAP2L1 1308 3 1308.00 3.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 88 35 14.74 36.44 GT 1.8892 AG 1.8062 4.4531 1171 0
LMNA--NTRK1 1276 2 1276.00 2.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 3225 221 0.40 5.76 GT 1.7465 AG 1.5058 4.341 947 0
TPM3--NTRK1 1239 4 1239.00 4.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 6069 25 0.20 47.85 GT 1.9329 AG 1.6895 4.2222 355 0
ETV6--NTRK3 1075 1 1075.00 0.98 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 1908 10 0.56 97.91 GT 1.7819 AG 1.9656 3.6548 1252 0
ETV6--NTRK3 11 1 11.00 0.01 ETV6^ENSG00000139083.11 11235 chr12:11869967:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- INCL_NON_REF_SPLICE NO 1971 10 0.01 1.18 AG 1.9086 AG 1.9656 0.0374 1252 0
ETV6--NTRK3 10 1 10.00 0.01 ETV6^ENSG00000139083.11 11240 chr12:11869972:+ NTRK3^ENSG00000140538.16 46244 chr15:87940747:- INCL_NON_REF_SPLICE NO 1891 10 0.01 1.09 AG 1.6895 GC 1.7968 0.034 1247 0
NCOA4--RET 947 3 947.00 3.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 1996 353 0.48 2.69 GT 1.9086 AG 1.8323 3.2269 5144 0
CCDC6--RET 837 2 837.00 2.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 1529 353 0.55 2.37 GT 1.8892 AG 1.8323 2.8499 2092 0
KIF5B--RET 796 4 796.00 4.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 1110 10 0.72 72.82 GT 1.9656 AG 1.9656 2.7174 3178 0
EML4--ALK 771 2 771.00 2.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 387 62 1.99 12.29 GT 1.6895 AG 1.9086 2.6257 1550 0
SLC34A2--ROS1 644 9 644.00 8.93 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 42 654.00 15.21 GT 1.8892 AG 1.7465 2.2178 999 0
SLC34A2--ROS1 5 2 5.00 0.02 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58030 chr6:117324410:- INCL_NON_REF_SPLICE YES 0 66 8.00 0.12 GA 1.7465 AT 1.9086 0.0171 1004 0
SLC34A2--ROS1 3 9 3.00 0.04 SLC34A2^ENSG00000157765.13 6081 chr4:25664327:+ ROS1^ENSG00000047936.11 58024 chr6:117324416:- INCL_NON_REF_SPLICE YES 14 35 0.87 0.36 GA 1.8256 TA 1.5301 0.0103 998 0
SLC34A2--ROS1 3 2 3.00 0.01 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58031 chr6:117324409:- INCL_NON_REF_SPLICE YES 0 72 6.00 0.08 GA 1.7465 TT 1.8892 0.0102 1005 0
CD74--ROS1 538 5 538.00 4.93 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 20645 42 0.03 12.65 GT 1.7819 AG 1.7465 1.8441 2407 0
CD74--ROS1 8 5 8.00 0.07 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 20645 44 0.00 0.31 AC 1.9329 GA 1.8295 0.0274 2408 0
TFG--NTRK1 369 0 369.00 0.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 1258 25 0.29 14.23 GT 1.9329 AG 1.6895 1.2534 883 0
SLC45A3--BRAF 355 0 355.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 1048 356.00 0.34 GT 1.5628 AG 1.7465 1.2058 2599 0
EGFR--SEPTIN14 340 5 340.00 5.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 6 25 49.43 13.31 GT 1.8892 AG 1.9899 1.1719 658 0
PAX8--PPARG 337 0 337.00 0.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 89 13 3.76 24.14 GT 1.8295 AG 1.9329 1.1447 1923 0
STX16--NPEPL1 123 4 123.00 3.96 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 980 126 0.13 1.01 GT 1.7968 AG 1.8256 0.4313 1940 0
STX16--NPEPL1 5 1 5.00 0.04 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1064 126 0.01 0.06 GT 1.8062 AG 1.8256 0.0171 2729 0
STX16--NPEPL1 1 0 1.00 0.00 STX16^ENSG00000124222.22 1835 chr20:58652087:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1555 126 0.00 0.02 GT 1.9899 AG 1.8256 0.0034 1258 0
TLK2--FAM157A 72 1 72.00 1.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ FAM157A^ENSG00000236438.7 45187 chr3:198180755:+ ONLY_REF_SPLICE YES 374 53 0.20 1.37 GT 1.8892 AG 1.8892 0.248 2733 0
TVP23C--CDRT4 65 0 65.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 121 6 0.54 9.43 GT 1.9329 AG 1.9899 0.2208 1215 0
TVP23C--CDRT4 22 0 22.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 428 6 0.05 3.29 GT 1.8323 AG 1.9899 0.0747 2126 0
TVP23C--CDRT4 20 0 20.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 121 35 0.17 0.58 GT 1.9329 AG 1.6402 0.0679 137 0
TVP23C--CDRT4 11 0 11.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 22 6 0.52 1.71 GT 1.8892 AG 1.9899 0.0374 1949 0
TVP23C--CDRT4 7 0 7.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 428 35 0.02 0.22 GT 1.8323 AG 1.6402 0.0238 1363 0
TVP23C--CDRT4 2 0 2.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 22 35 0.13 0.08 GT 1.8892 AG 1.6402 0.0068 873 0
37 rows