{
"source_file": "multiqc_general_stats.txt",
"total_samples": 480,
"metrics": [
"Sample",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate",
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct",
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped",
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean",
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median",
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30",
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION",
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts",
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm",
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature",
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc",
"STAR_mqc-generalstats-star-uniquely_mapped_percent",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias",
"fastp_mqc-generalstats-fastp-pct_adapter",
"fastp_mqc-generalstats-fastp-pct_duplication",
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts",
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm",
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts",
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm",
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts",
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm",
"fastp_mqc-generalstats-fastp-pct_surviving",
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc",
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads",
"STAR_mqc-generalstats-star-uniquely_mapped",
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length",
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length",
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates",
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates",
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails",
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails",
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences",
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target",
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads",
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads",
"fastp_mqc-generalstats-fastp-after_filtering_gc_content",
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases",
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads",
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length",
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length",
"Kallisto_mqc-generalstats-kallisto-fragment_length",
"Kallisto_mqc-generalstats-kallisto-percent_aligned",
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads",
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent"
],
"samples": [
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s08",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975227,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8787,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009839,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 139.5,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 129,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976827,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.64265,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.112,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.208,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.542,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 539679900,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.77,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 60.678441480126686,
"fastp_mqc-generalstats-fastp-pct_duplication": 38.2911,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.594,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.806,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.25,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.521,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.82958006616461,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 570406030,
"STAR_mqc-generalstats-star-uniquely_mapped": 267431259,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.567477,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.280073,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.692872,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 261.933148,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 71,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.467114,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.27595,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.72405,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 27728736,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 72755921,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 58098792,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 143730205,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 209225167,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.636327,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 207441230,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.553153,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70437691143,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 570406030,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 81.79036580612174
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s08_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.78269789678171,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291530450,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 139.5,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.46265257749818,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 246594092,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s08_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.31239968385724,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291530450,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s08_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.53806055311162,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.53806055311162,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.75204262496138,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.75204262496138,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 285203015,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 285203015,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s08_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.69671108490911,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.69671108490911,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.33445874922762,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.33445874922762,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 285203015,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 285203015,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s16",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974643,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8945,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009765,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 141.5,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976241,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.646534,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.115,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.216,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.555,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 546994842,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.04,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 58.77968521238134,
"fastp_mqc-generalstats-fastp-pct_duplication": 39.8696,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.584,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.794,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.232,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.488,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.72353019319166,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 576413436,
"STAR_mqc-generalstats-star-uniquely_mapped": 271032956,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.56852,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.27931,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.693549,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 265.746921,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 73,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.469399,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.27484,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.72516,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 27599872,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 72821699,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 57923736,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 143829400,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 207180981,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.640221,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 207381656,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.55127,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71990403984,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 576413436,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 82.94858476381162
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s16_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.01627507717653,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294920494,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 141.5,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.73732581070507,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 249982800,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s16_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.31528985870109,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294920494,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s16_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.06244428001153,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.06244428001153,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.04185022047989,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.04185022047989,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 288206718,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 288206718,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s16_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.2101699551639,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.2101699551639,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.45623860396665,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.45623860396665,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 288206718,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 288206718,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s24",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975488,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9069,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00989,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977058,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.614199,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.127,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.236,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.522,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 437755938,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.13,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 62.17351376466112,
"fastp_mqc-generalstats-fastp-pct_duplication": 36.8226,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.597,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.807,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.239,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.486,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.61952470016867,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 461024502,
"STAR_mqc-generalstats-star-uniquely_mapped": 216973534,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.557477,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.272037,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.702725,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 227.703006,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 62,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.450961,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.267964,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.732036,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 23494175,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 64182411,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 49147265,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 126957167,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 195815702,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.608125,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 180664072,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550303,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 56712660582,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 461024502,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.25687303620914
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s24_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.89988016643656,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 236133347,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 136.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.70323383376271,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 199861576,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s24_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 75.69643544111432,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 236133347,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s24_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.0233747749919,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.0233747749919,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.8928313484836,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.8928313484836,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 230512251,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 230512251,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s24_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.17425715477482,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.17425715477482,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.7347467273546,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.7347467273546,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 230512251,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 230512251,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s32",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975131,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9244,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.010067,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136.4,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976739,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.725656,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.108,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.196,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.588,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 434303903,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.83,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 63.17867940588445,
"fastp_mqc-generalstats-fastp-pct_duplication": 43.8762,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.586,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.792,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.219,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.418,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.26024649957262,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 459063162,
"STAR_mqc-generalstats-star-uniquely_mapped": 215373978,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.511465,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.374495,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.589763,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 132.708289,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 34,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.35669,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.377875,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.622125,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 23436569,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 38585497,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 48420198,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 76253188,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 137310685,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.718351,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 129294629,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.552486,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 56043744103,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 459063162,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 81.89767371810942
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s32_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.9929257840702,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 235997326,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 136.4,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 85.77757106112557,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 196886615,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s32_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.754004362562,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 235997326,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s32_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.11016767230824,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.11016767230824,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.9272721792764,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.9272721792764,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 229531581,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 229531581,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s32_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.26966388124168,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.26966388124168,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.62727431107487,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.62727431107487,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 229531581,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 229531581,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s40",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975716,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9328,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009368,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.3,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977114,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.762553,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.118,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.211,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.566,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 481983078,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.48,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 66.8943645983711,
"fastp_mqc-generalstats-fastp-pct_duplication": 44.1701,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.602,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.806,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.266,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.545,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.35061392640084,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 506350638,
"STAR_mqc-generalstats-star-uniquely_mapped": 239189516,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.495572,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.416958,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.544741,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 112.96811,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 28,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.323608,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.424361,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.575639,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 25137155,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 34098086,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 51639671,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 67465415,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 130364108,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.755409,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 123848589,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.544818,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 60687866216,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 506350638,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.05229293621726
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s40_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.82192837038627,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 260065457,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 131.3,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.46810078671216,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 218915890,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s40_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.03441430123166,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 260065457,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s40_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.75409560360819,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.75409560360819,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.73800599974587,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.73800599974587,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 253175319,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 253175319,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s40_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.90656981852169,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.90656981852169,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.9076549419856,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.9076549419856,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 253175319,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 253175319,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s48",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97469,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9403,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009858,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 135.1,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976279,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.743745,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.112,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.2,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.534,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 403498270,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.96,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 63.549093927095,
"fastp_mqc-generalstats-fastp-pct_duplication": 45.62,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.599,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.81,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.243,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.478,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.27536140897321,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 426034914,
"STAR_mqc-generalstats-star-uniquely_mapped": 200144189,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.493896,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.381244,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.581355,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 113.091705,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 28,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.320359,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.385339,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.614661,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 20707650,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 33031199,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 42812708,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 65284633,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 122508015,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.736413,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 112297339,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.553514,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 51730155404,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 426034914,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 82.45478433753414
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s48_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.77101670883738,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 218983979,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 135.1,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.5665117765442,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 184401782,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s48_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.90632313586613,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 218983979,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s48_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.48176663286334,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.48176663286334,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.69866388428355,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.69866388428355,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 213017457,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 213017457,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "GM24385_0001_RNA_0001_23H5VFLT4_s48_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.65621226996433,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.65621226996433,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.00461377112262,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.00461377112262,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 213017457,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 213017457,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "HD789_0002_RNA_0008_23H5VFLT4_s19",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976282,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 63.71,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9263,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.004234,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 172.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 157,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977047,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.455875,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.106,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.213,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 4.227,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 575935933,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.26,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 36.755558,
"fastp_mqc-generalstats-fastp-pct_duplication": 34.6476,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.561,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.795,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.142,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.337,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.91845066666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593510704,
"STAR_mqc-generalstats-star-uniquely_mapped": 285650844,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.714951,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.097927,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.89432,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 645.840292,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 274,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.61725,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.079814,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.920186,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 12787334,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 147427510,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 31737137,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 289839374,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 426168763,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.453945,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 324089247,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.547408,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 80285839825,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593510704,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.01821790117157
},
{
"Sample": "HD789_0002_RNA_0008_23H5VFLT4_s19_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.30879750096946,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 487077937,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 172.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 94.68977226735915,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 280996967,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "HD789_0002_RNA_0008_23H5VFLT4_s19_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.50714105227716,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 487077937,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "HD789_0002_RNA_0008_23H5VFLT4_s19_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.5368926859321,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.5368926859321,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.8221792172008,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.8221792172008,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296755352,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296755352,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "HD789_0002_RNA_0008_23H5VFLT4_s19_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.5707462893542,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.5707462893542,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.00278148527929,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.00278148527929,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296755352,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296755352,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "NTC_0001_0001_23H5VFLT4_s15",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.895677,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": "N/A",
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.4199,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.349003,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 32.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 31,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Skipped",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.922564,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.648042,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 8272,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 9.17,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 55.950172468767214,
"fastp_mqc-generalstats-fastp-pct_duplication": 43.6114,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 0,
"fastp_mqc-generalstats-fastp-pct_surviving": 17.604858111829326,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 72882,
"STAR_mqc-generalstats-star-uniquely_mapped": 3342,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.386258,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.010063,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 0.000152,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 0,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.976402,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.023598,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 7903,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 191,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16275,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 424,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 36700,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.421874,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 42135,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.67862,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 4257329,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 72882,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 1.83612490030118
},
{
"Sample": "NTC_0001_0001_23H5VFLT4_s15_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 73,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.42384803424254,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 54.54545454545454,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 206994,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 32.9026,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 3.2875058313438164,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 1198,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "NTC_0001_0001_23H5VFLT4_s15_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 93,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.0938577929795,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 54.54545454545454,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 206994,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "NTC_0001_0001_23H5VFLT4_s15_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 65,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 65,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 64.27329107324168,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 64.27329107324168,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 50.9892703273785,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 50.9892703273785,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 36.36363636363637,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 36441,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 36441,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 37,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 37,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "NTC_0001_0001_23H5VFLT4_s15_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 70,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 70,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 66.22304547076095,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 66.22304547076095,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 53.06385664498779,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 53.06385664498779,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 45.45454545454545,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 45.45454545454545,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 36441,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 36441,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 37,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 37,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0001_23H5VFLT4_s13",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976756,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9249,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005157,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 161.2,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 148,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977597,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.509058,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.104,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.191,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.65,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 574613991,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.88,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 43.254025166666665,
"fastp_mqc-generalstats-fastp-pct_duplication": 36.4339,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.992,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.351,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.156,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.203,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.92892966666666,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593573578,
"STAR_mqc-generalstats-star-uniquely_mapped": 284554871,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.597568,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.116715,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.872837,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 541.452389,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 133,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.521453,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.101145,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.898855,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 14611163,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 129846867,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 34193723,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 255713682,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 347933411,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.506433,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 292968423,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545698,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 79039775226,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593573578,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.30499120169554
},
{
"Sample": "V4_0001_RNA_0001_23H5VFLT4_s13_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.73851683756536,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 381777144,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 161.2,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 93.30332051943188,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 276911929,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0001_23H5VFLT4_s13_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.82314409263091,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 381777144,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0001_23H5VFLT4_s13_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.2999821430731,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.2999821430731,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.84341353324075,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.84341353324075,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296786789,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296786789,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0001_23H5VFLT4_s13_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.3434741598286,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.3434741598286,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.93076426012061,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.93076426012061,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296786789,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296786789,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s01",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974865,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8916,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006658,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 153,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 140,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975988,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.551268,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.138,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.256,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.532,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 562894561,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.83,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 49.55443433333333,
"fastp_mqc-generalstats-fastp-pct_duplication": 33.9223,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.781,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.019,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.086,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.029,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.00147133333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 588008828,
"STAR_mqc-generalstats-star-uniquely_mapped": 278818879,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.58814,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.17382,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.811463,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 436.181991,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 110,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.508232,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.160857,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.839143,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 20990279,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 109500070,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 46238926,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 215862770,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 283703214,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.547597,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 266016748,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550289,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76007674358,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 588008828,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.43430053133625
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s01_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.51088743632374,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 388236669,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 153,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.14441667532243,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 265028564,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s01_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.16422607022659,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 388236669,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s01_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.55130776710038,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.55130776710038,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.29585424652167,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.29585424652167,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294004414,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294004414,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s01_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.62787305295356,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.62787305295356,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.9916935184974,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.9916935184974,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294004414,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294004414,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s02",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97548,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8787,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.0071,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.4,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976673,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.584713,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.145,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.268,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.543,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 563315639,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.88,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 53.162948,
"fastp_mqc-generalstats-fastp-pct_duplication": 36.1047,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.751,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.984,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.126,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.154,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.03243833333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 588194630,
"STAR_mqc-generalstats-star-uniquely_mapped": 279032155,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.583429,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.198579,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.784494,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 379.635101,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 100,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.500745,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.187782,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.812218,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 22674271,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 98073760,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 48991766,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 193543706,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 258952157,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.580562,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 246711433,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545903,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75058515474,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 588194630,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.60174648736016
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s02_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.2747839306378,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 343374498,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 148.4,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 89.72533292253961,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 263879795,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s02_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.92543920159078,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 343374498,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s02_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.76236789853047,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.76236789853047,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.1023666580628,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.1023666580628,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294097315,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294097315,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s02_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.85655950990235,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.85655950990235,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.74741446695562,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.74741446695562,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294097315,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294097315,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s03",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975037,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8761,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007644,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.4,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 137,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976274,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.614886,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.122,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.225,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.583,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 561400928,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 53.195283,
"fastp_mqc-generalstats-fastp-pct_duplication": 38.5134,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.69,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.914,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.159,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.265,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.999039,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 587994234,
"STAR_mqc-generalstats-star-uniquely_mapped": 278073554,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.579507,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.220444,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.759946,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 340.409021,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 91,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.49214,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.210493,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.789507,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 23548117,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 88323306,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 50527620,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 174186296,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 232321480,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.610185,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 229208797,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548785,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75108236422,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 587994234,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.48706922946283
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s03_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.41651954695206,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 369074431,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 148.4,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 89.00811738232113,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 261681299,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s03_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.81699759708489,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 369074431,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s03_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.9525013301406,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.9525013301406,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.55317417928151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.55317417928151,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293997117,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293997117,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s03_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.04761086143577,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.04761086143577,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.04936932192325,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.04936932192325,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293997117,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293997117,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s04",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975437,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8857,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008415,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976793,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.640509,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.12,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.221,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.583,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 559487770,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.4,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 55.047195833333326,
"fastp_mqc-generalstats-fastp-pct_duplication": 40.7924,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.652,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.871,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.185,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.352,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.86675533333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 587200532,
"STAR_mqc-generalstats-star-uniquely_mapped": 277145007,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.57304,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.249138,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.727801,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 298.267859,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 80,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.480442,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.241456,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.758544,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 25157494,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 79033254,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 53379712,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 155937014,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 214182941,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.63512,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 214257858,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.549505,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74414384279,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 587200532,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.95046070079017
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s04_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.05166983519055,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 311269831,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 145.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 88.10084524923421,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 258664316,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s04_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.22729460996794,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 311269831,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s04_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.85681601868848,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.85681601868848,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.74749811137096,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.74749811137096,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293600266,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293600266,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s04_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.96752667451602,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.96752667451602,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.93623258391418,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.93623258391418,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293600266,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293600266,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s05",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974789,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8753,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009276,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 140.8,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 131,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976318,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.649394,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.111,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.204,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.557,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 555856248,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.93,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 59.30598500000001,
"fastp_mqc-generalstats-fastp-pct_duplication": 40.615899999999996,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.634,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.855,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.221,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.422,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.727394,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 586364364,
"STAR_mqc-generalstats-star-uniquely_mapped": 275377541,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.568422,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.262597,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.711394,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 275.11855,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 74,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.471134,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.257134,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.742866,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 26075142,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 75331503,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 54912870,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 148763124,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 207621562,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.64337,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 209115004,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.554543,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72938938230,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 586364364,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 82.14247557021221
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s05_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.53722294219259,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 301983611,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 140.8,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.54027248490837,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 256652481,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s05_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.94820803091415,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 301983611,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s05_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.53335470093472,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.53335470093472,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.50196083440295,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.50196083440295,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293182182,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293182182,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s05_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.6715593309828,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.6715593309828,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.9221570497783,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.9221570497783,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293182182,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293182182,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s06",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975156,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8773,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009124,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 141.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 131,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976605,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.653575,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.109,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.201,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.555,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 557180753,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.12,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 58.9649975,
"fastp_mqc-generalstats-fastp-pct_duplication": 40.7735,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.609,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.821,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.227,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.465,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.748479,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 586490874,
"STAR_mqc-generalstats-star-uniquely_mapped": 275992647,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.56776,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.270437,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.703672,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 268.556831,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 73,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.469438,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.265229,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.734771,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 26581664,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 73640049,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 55891897,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 145429611,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 205256196,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.647612,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 206672555,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.552344,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73191272468,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 586490874,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 82.93602675178998
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s06_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.77908271273087,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 312779360,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 141.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.44358569507767,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 256424325,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s06_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.19884845169966,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 312779360,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s06_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.90633699783707,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.90633699783707,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.42057068805661,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.42057068805661,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293245437,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293245437,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s06_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.02996333068262,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.02996333068262,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.90265326062566,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.90265326062566,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293245437,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293245437,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s07",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974108,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8727,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.010954,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 138.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975952,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.667883,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.118,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.222,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.536,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 476872033,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.08,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 60.480683497167334,
"fastp_mqc-generalstats-fastp-pct_duplication": 40.309400000000004,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.586,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.801,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.196,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.359,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.4721474118727,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 507719532,
"STAR_mqc-generalstats-star-uniquely_mapped": 236295201,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.547584,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.311242,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.656487,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 205.015547,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.43179,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.309712,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.690288,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 25704926,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 57291297,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 53638444,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 113136719,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 180516629,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.660567,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 172336511,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.560285,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 62803503734,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 507719532,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 79.55074222028229
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s07_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.84829860646781,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 260443391,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 138.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 85.26725459913959,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 216459253,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s07_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.85586096076523,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 260443391,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s07_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.89433480372782,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.89433480372782,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.78528892374095,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.78528892374095,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 253859766,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 253859766,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s07_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.0623218529241,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.0623218529241,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.98690820340236,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.98690820340236,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 253859766,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 253859766,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s09",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975521,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9158,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005953,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 157.2,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 144,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97654,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.530926,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.152,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.283,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.595,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 567846214,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.48,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 47.192965666666666,
"fastp_mqc-generalstats-fastp-pct_duplication": 33.958,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.782,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.015,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.087,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.061,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.26538599999999,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589592316,
"STAR_mqc-generalstats-star-uniquely_mapped": 281474166,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.594007,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.166696,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.820698,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 471.648179,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 124,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.516382,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.153036,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.846964,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 20955219,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 115974735,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 46412411,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 228503660,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 310972687,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.527765,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 278426127,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.540286,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77076970172,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589592316,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.62373123858023
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s09_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.77508043075069,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 358313001,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 157.2,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.73289143747931,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 267477078,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s09_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.44099175829254,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 358313001,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s09_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.97101848932508,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.97101848932508,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.39640180715304,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.39640180715304,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294796158,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294796158,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s09_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.0358823808009,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.0358823808009,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.07507874408266,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.07507874408266,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294796158,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294796158,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s10",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975539,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9138,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00662,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 153.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 141,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976623,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.569825,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.139,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.259,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.586,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 565734428,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.24,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 49.012299666666664,
"fastp_mqc-generalstats-fastp-pct_duplication": 37.188700000000004,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.736,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.965,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.112,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.144,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.133481,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 588800886,
"STAR_mqc-generalstats-star-uniquely_mapped": 280375116,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.589171,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.187027,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.797717,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 412.527748,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 110,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.508056,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.174811,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.825189,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21902536,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 103389788,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 47787095,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 203823377,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 265731070,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.566053,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 255508397,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542633,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76599190840,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 588800886,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.85825189538924
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s10_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.83656513137049,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 356236232,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 153.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.11397751191564,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 265295949,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s10_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.6352098896903,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 356236232,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s10_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.31096587038763,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.31096587038763,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.44513016343691,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.44513016343691,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294400443,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294400443,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s10_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.38702112618765,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.38702112618765,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.24054525381575,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.24054525381575,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294400443,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294400443,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s11",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976155,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9038,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007314,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 154.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 143,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977318,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.588567,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.131,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.244,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.615,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 540094013,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.97,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 49.145630231108555,
"fastp_mqc-generalstats-fastp-pct_duplication": 38.823800000000006,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.678,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.901,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.128,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.223,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.24866601841869,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 563578038,
"STAR_mqc-generalstats-star-uniquely_mapped": 267621005,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.584622,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.213608,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.768798,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 361.599223,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 99,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.499407,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.202493,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.797507,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 23211004,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 91415193,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 50048469,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 180130022,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 244468500,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.584262,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 234300774,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542738,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73390143171,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 563578038,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.92247406477824
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s11_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.73642662128191,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286812056,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 154.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 88.88690158646672,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 250473528,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s11_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.50688205671167,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286812056,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s11_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.35278307633413,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.35278307633413,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.79493825072382,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.79493825072382,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 281789019,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 281789019,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s11_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.43983779935726,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.43983779935726,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.44132778140239,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.44132778140239,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 281789019,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 281789019,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s12",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974357,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8902,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008471,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 146.8,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975751,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.621703,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.121,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.225,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.575,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 559525426,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.45,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 55.1876845,
"fastp_mqc-generalstats-fastp-pct_duplication": 37.9452,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.65,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.867,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.188,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.364,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.870476,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 587222856,
"STAR_mqc-generalstats-star-uniquely_mapped": 277323010,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.577497,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.244762,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.733153,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 315.781715,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 86,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.487523,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.236859,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.763141,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 25978911,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 83702202,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 55129542,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 165133164,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 228764667,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.616437,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 225237098,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548317,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74399928471,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 587222856,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.16954046616718
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s12_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.62014056994278,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 384646738,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 146.8,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.91295787029108,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 258122491,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s12_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.98791400861417,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 384646738,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s12_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.96949557767212,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.96949557767212,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.39805409299137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.39805409299137,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293611428,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293611428,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s12_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.08213061107418,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.08213061107418,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.98227714455393,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.98227714455393,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293611428,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293611428,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s13",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974978,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9095,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008708,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 147.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 137,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976398,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.67173,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.113,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.21,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.607,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 560909675,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 53.62839083333333,
"fastp_mqc-generalstats-fastp-pct_duplication": 43.0853,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.611,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.823,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.173,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.34,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.00835066666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 588050104,
"STAR_mqc-generalstats-star-uniquely_mapped": 277975033,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.564712,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.276803,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.697133,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 261.564125,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 70,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.465954,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.270707,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.729293,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 25783194,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 69460619,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 54385955,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 136971984,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 197733844,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.665881,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 196478930,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548702,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75316397194,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 588050104,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.60791699612497
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s13_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.5659828845844,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 337873950,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 147.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.80075379427193,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 258156212,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s13_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.84922904264471,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 337873950,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s13_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.30047827693267,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.30047827693267,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.53764435047279,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.53764435047279,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294025052,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294025052,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s13_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.41668330016995,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.41668330016995,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.8936516989811,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.8936516989811,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294025052,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294025052,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s14",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975245,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8932,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008975,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976709,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.655819,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.111,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.206,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.627,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 560289265,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.42,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 56.401464000000004,
"fastp_mqc-generalstats-fastp-pct_duplication": 41.4632,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.598,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.81,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.203,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.419,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.014775,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 588088650,
"STAR_mqc-generalstats-star-uniquely_mapped": 277624988,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.568825,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.271164,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.703197,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 271.397891,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 74,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.471556,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.265571,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.734429,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 26519447,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 73338616,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 55824683,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 144767436,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 207891860,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.649933,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 205870266,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548658,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74525236093,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 588088650,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.02690730600895
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s14_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.92069057342033,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 311105812,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 143.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.65865112343182,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 257755289,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s14_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.21402626840411,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 311105812,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s14_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.87180975521292,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.87180975521292,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.65997237791552,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.65997237791552,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294044325,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294044325,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s14_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.9967133492544,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.9967133492544,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.97828846947375,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.97828846947375,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294044325,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294044325,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s15",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975097,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8944,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009041,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97652,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.630565,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.111,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.209,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.611,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 527867380,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.37,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 55.42863340398988,
"fastp_mqc-generalstats-fastp-pct_duplication": 39.5069,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.583,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.795,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.208,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.444,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.88760992653872,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 554380956,
"STAR_mqc-generalstats-star-uniquely_mapped": 261577439,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.572469,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.265068,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.710832,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 280.451593,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 78,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.476768,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.258712,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.741288,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 26146602,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 74918055,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 55125659,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 147830378,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 208640613,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.624865,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 207967984,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548514,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70548571419,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 554380956,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.98414098720373
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s15_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.47398733614156,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 283172179,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 145.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.0326948965397,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 241246343,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s15_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.08382549392738,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 283172179,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s15_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.43916670182298,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.43916670182298,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.48396356936426,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.48396356936426,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 277190478,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 277190478,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s15_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.55960881527827,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.55960881527827,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.01189358739126,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.01189358739126,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 277190478,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 277190478,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s17",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975838,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9265,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005814,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 155.2,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 142,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976802,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.528177,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.16,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.3,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.617,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 568206963,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.6,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 46.839837,
"fastp_mqc-generalstats-fastp-pct_duplication": 34.6931,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.774,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.003,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.082,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.057,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.20193666666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589211620,
"STAR_mqc-generalstats-star-uniquely_mapped": 281639627,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.594728,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.163838,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.82392,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 474.316252,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 126,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.517284,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.150262,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.849738,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 20683239,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 116964941,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 45843901,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 230543319,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 309737773,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.525106,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 279812829,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.537355,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76978026642,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589211620,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.03366838263995
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s17_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.70024062878367,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 443999172,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 155.2,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.88596283963307,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 267755327,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s17_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.40822117577343,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 443999172,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s17_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.84333385346338,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.84333385346338,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.57219323903468,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.57219323903468,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 27.27272727272727,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294605810,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294605810,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s17_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.90574136334922,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.90574136334922,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.45433396051551,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.45433396051551,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294605810,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294605810,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s18",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975475,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9202,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006802,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 152.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 140,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976593,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.561996,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.145,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.269,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.579,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 563763224,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.12,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 49.714254000000004,
"fastp_mqc-generalstats-fastp-pct_duplication": 35.6043,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.737,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.961,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.12,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.156,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.88157066666666,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 587289424,
"STAR_mqc-generalstats-star-uniquely_mapped": 279322086,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.590125,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.186819,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.797787,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 416.852105,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 112,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.509053,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.174569,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.825431,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 22201539,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 104977886,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 48475782,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 207009947,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 274529935,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.558173,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 259480277,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.541744,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76006119215,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 587289424,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.38213301517615
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s18_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.62381444068612,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 350152559,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 152.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 89.94859134395037,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 264129282,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s18_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.19500160883348,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 350152559,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s18_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.62544947855216,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.62544947855216,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.28782888773418,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.28782888773418,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293644712,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293644712,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s18_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.7062958075676,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.7062958075676,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.95361845322236,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.95361845322236,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293644712,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293644712,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s19",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975155,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9243,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007645,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 152,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 140,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976419,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.604394,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.132,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.249,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.653,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 563730049,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.88,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 50.01361416666666,
"fastp_mqc-generalstats-fastp-pct_duplication": 38.3776,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.68,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.902,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.143,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.256,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.16667533333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589000052,
"STAR_mqc-generalstats-star-uniquely_mapped": 279426000,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.583399,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.223755,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.757143,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 356.67373,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 98,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.498599,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.213156,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.786844,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 24539180,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 90584071,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 52746611,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 178484114,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 238864638,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.599773,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 235733539,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.541597,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76132362912,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589000052,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.57794637028414
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s19_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.07634046610005,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 353789581,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 152,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 88.61182307671511,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 260961842,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s19_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.5506382330832,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 353789581,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s19_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.49087621133182,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.49087621133182,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.66623592429528,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.66623592429528,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294500026,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294500026,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s19_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.59634126823474,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.59634126823474,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.12912757979387,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.12912757979387,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294500026,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294500026,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s20",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974813,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9131,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008496,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 137,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976222,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.613028,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.127,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.239,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.64,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 559396069,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.4,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 53.93965550000001,
"fastp_mqc-generalstats-fastp-pct_duplication": 38.624399999999994,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.647,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.861,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.18,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.349,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.91069,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 587464140,
"STAR_mqc-generalstats-star-uniquely_mapped": 277277909,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.580942,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.238199,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.740137,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 329.566447,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 91,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.492288,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.229723,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.770277,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 25780644,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 86444195,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 54879045,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 170521507,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 234118791,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.60782,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 230391829,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545807,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74793586397,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 587464140,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.75995373690579
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s20_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.99930170643665,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 320397685,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 148.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.87198483298062,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 258108200,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s20_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.43278710566317,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 320397685,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s20_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.53670401737202,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.53670401737202,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.39449094965252,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.39449094965252,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293732070,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293732070,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s20_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.6614338672655,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.6614338672655,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.79515090635817,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.79515090635817,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293732070,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293732070,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s21",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975126,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8986,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008936,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 144.8,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976561,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.634961,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.121,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.223,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.603,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 554695986,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.2,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 56.68115695222705,
"fastp_mqc-generalstats-fastp-pct_duplication": 39.4509,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.622,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.833,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.211,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.427,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.87849618272514,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 583490244,
"STAR_mqc-generalstats-star-uniquely_mapped": 274833569,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.573673,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.258321,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.717574,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 292.794112,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 80,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.479877,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.25167,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.74833,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 26444682,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 78632167,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 55876749,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 155216871,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 219633877,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.629287,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 216307678,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548234,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73538944467,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 583490244,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.0060433455656
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s21_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.38963164749728,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 298068660,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 144.8,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.6401981452838,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 255686003,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s21_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.82950311791437,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 298068660,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s21_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.17519258128334,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.17519258128334,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.43078309891962,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.43078309891962,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291745122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 291745122,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s21_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.30685342187144,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.30685342187144,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.80077668604955,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.80077668604955,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291745122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 291745122,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s22",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975395,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9023,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009127,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 144.3,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 133,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976866,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.613458,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.12,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.225,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.616,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 485838686,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.31,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 56.237991328251205,
"fastp_mqc-generalstats-fastp-pct_duplication": 38.129400000000004,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.603,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.817,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.207,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.432,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.9368900329226,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 510436288,
"STAR_mqc-generalstats-star-uniquely_mapped": 240707747,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.570357,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.254455,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.722271,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 273.506342,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 76,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.474159,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.247631,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.752369,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 24102397,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 73229481,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 50932341,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 144571781,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 204485400,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.607859,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 200162836,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546898,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 64486736514,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 510436288,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.75382773633314
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s22_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.0504874615204,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 260594495,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 144.3,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.24767389578697,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 222671894,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s22_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.20573534993578,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 260594495,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s22_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.45037370462188,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.45037370462188,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.09344674992963,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.09344674992963,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 255218144,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 255218144,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s22_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.58351318862344,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.58351318862344,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.31047951368743,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.31047951368743,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 255218144,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 255218144,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s23",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97544,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8932,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009452,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.4,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976971,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.683885,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.115,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.216,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.621,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 543374258,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.11,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 57.01535758066757,
"fastp_mqc-generalstats-fastp-pct_duplication": 43.2131,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.589,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.797,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.229,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.5,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.875401350822,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 572221808,
"STAR_mqc-generalstats-star-uniquely_mapped": 269272621,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.556842,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.299507,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.671191,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 231.868224,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 62,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.452004,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.29592,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.70408,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 26385636,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 62779086,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 55285023,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 123892948,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 176618396,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.677421,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 184586834,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.549162,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72012724747,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 572221808,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.0616188362416
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s23_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.32295033795059,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292321564,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 143.4,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.87023931111693,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 248545227,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s23_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.48204259095787,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292321564,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s23_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.93690661646366,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.93690661646366,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.37219450551412,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.37219450551412,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286110904,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 286110904,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s23_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.0815488982552,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.0815488982552,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.54076705398279,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.54076705398279,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286110904,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 286110904,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s25",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974955,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9339,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006055,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 154.5,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 141,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976018,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.62153,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.134,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.24,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.544,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 565849545,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.43,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 49.651399166666664,
"fastp_mqc-generalstats-fastp-pct_duplication": 39.3236,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.786,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.018,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.073,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.997,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.01600366666666,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 588096022,
"STAR_mqc-generalstats-star-uniquely_mapped": 280602305,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.571585,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.193105,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.791053,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 355.499638,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 86,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.488038,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.180519,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.819481,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 19878967,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 90242237,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 43408008,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 177820859,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 232695553,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.617766,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 224790062,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545544,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76035652510,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 588096022,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.3206156727412
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s25_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.29815497063635,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 433147764,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 154.5,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 91.01093834639133,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 267615854,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s25_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.4829784648077,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 433147764,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s25_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.56985024802634,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.56985024802634,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.45002959387321,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.45002959387321,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 27.27272727272727,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294048011,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294048011,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s25_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.64302919566424,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.64302919566424,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.75442424612449,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.75442424612449,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294048011,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294048011,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s26",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974832,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9273,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006902,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 155.4,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 142,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975983,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.644709,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.128,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.234,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.624,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 561279499,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.12,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 48.803731166666665,
"fastp_mqc-generalstats-fastp-pct_duplication": 40.5678,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.725,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.955,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.095,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.103,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.45796666666666,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 584747800,
"STAR_mqc-generalstats-star-uniquely_mapped": 278120363,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.569289,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.222531,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.758282,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 319.631574,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 81,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.482981,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.210988,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.789012,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21646927,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 80950751,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 46811096,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 159510644,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 206133045,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.640259,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 210357879,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.541422,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75738243517,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 584747800,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.46345900563182
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s26_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.69003817481914,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 409372105,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 155.4,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 89.83303673823141,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 262648353,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s26_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.88831483389805,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 409372105,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s26_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.81998899696586,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.81998899696586,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.04118019912275,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.04118019912275,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 27.27272727272727,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292373900,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 292373900,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s26_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.90136248481824,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.90136248481824,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.48942099601882,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.48942099601882,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292373900,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 292373900,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s27",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97544,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.929,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007458,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 153.3,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 140,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976667,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.713208,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.12,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.222,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.659,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 561912082,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.93,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 50.289597,
"fastp_mqc-generalstats-fastp-pct_duplication": 46.624900000000004,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.676,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.899,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.126,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.21,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.79062133333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 586743728,
"STAR_mqc-generalstats-star-uniquely_mapped": 278511106,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.548518,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.288588,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.68588,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 229.818266,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.446837,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.281055,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.718945,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 23332695,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 59685701,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 49462496,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 117556152,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 166406661,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.707888,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 171394599,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.541053,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75805206526,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 586743728,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.81197953042931
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s27_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.53798534564197,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 350527374,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 153.3,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 88.70910197441428,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 260247546,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s27_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.58200204479535,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 350527374,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s27_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.39479690867697,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.39479690867697,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.25946041551238,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.25946041551238,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293371864,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293371864,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s27_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.4913127763336,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.4913127763336,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.46634387056146,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.46634387056146,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293371864,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293371864,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s28",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975442,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9289,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008282,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 147.1,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976801,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.686569,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.122,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.222,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.625,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 447945969,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.52,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 53.94455706970713,
"fastp_mqc-generalstats-fastp-pct_duplication": 44.3799,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.644,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.867,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.147,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.263,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.59844403725846,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 469911882,
"STAR_mqc-generalstats-star-uniquely_mapped": 222070628,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.540291,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.287217,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.686831,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 195.781578,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 50,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.427475,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.281249,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.718751,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 20439159,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 52233573,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 43070207,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 102995136,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 149945740,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.680883,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 149957019,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.54509,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 59744680006,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 469911882,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.08197397893915
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s28_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.50430746914809,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240737384,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 147.1,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.85398237706193,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 206418151,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s28_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.32073563057173,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240737384,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s28_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.27730353070748,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.27730353070748,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.517564563573,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.517564563573,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 234955941,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 234955941,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s28_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.39202633314133,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.39202633314133,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.35959055290571,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.35959055290571,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 234955941,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 234955941,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s29",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97613,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9083,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008397,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977415,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.73581,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.112,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.204,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.656,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 559062264,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.72,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 57.41058166666667,
"fastp_mqc-generalstats-fastp-pct_duplication": 47.7375,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.617,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.83,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.186,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.368,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.52967333333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 585178040,
"STAR_mqc-generalstats-star-uniquely_mapped": 277147709,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.535184,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.34897,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.619972,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 180.023111,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 46,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.414215,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.348078,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.651922,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 26541397,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 49709980,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 55211846,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 98088105,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 158926285,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.729632,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 158213641,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.5437,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73639624091,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 585178040,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.16854477232846
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s29_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.90101285646357,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 320001515,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 143,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.40290288405218,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 255731297,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s29_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.72535650977133,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 320001515,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s29_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.8563421655399,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.8563421655399,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.33284510722649,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.33284510722649,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292589020,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 292589020,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s29_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.96762045957843,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.96762045957843,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.14266830448116,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.14266830448116,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292589020,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 292589020,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s30",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975406,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9232,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009015,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976838,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.697452,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.108,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.197,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.654,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 457813873,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.33,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 57.44077874740698,
"fastp_mqc-generalstats-fastp-pct_duplication": 44.723800000000004,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.604,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.821,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.224,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.472,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.15390093794876,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 481215060,
"STAR_mqc-generalstats-star-uniquely_mapped": 226964573,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.536452,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.318669,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.652141,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 179.418606,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 47,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.414683,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.315852,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.684148,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 22677467,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 49120254,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 47359305,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 96918597,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 147380601,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.691165,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 148616118,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545753,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 60239581194,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 481215060,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.55416147212567
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s30_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.18298382154417,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 247656067,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 143.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.79118230422796,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 208826120,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s30_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.09901944445441,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 247656067,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s30_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.2708842819674,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.2708842819674,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.05699583596159,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.05699583596159,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240607530,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 240607530,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s30_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.39350386914325,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.39350386914325,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.01599732139982,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.01599732139982,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240607530,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 240607530,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s31",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975465,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9091,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008921,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 142.4,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976853,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.773692,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.091,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.164,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.56,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 557527280,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.4,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 58.385435333333334,
"fastp_mqc-generalstats-fastp-pct_duplication": 50.65110000000001,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.583,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.789,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.193,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.369,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.56054400000001,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 585363264,
"STAR_mqc-generalstats-star-uniquely_mapped": 276296914,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.51467,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.379776,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.581972,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 142.34499,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 35,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.365282,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.383239,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.616761,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 25012260,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 40253247,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 51844212,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 79446531,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 135710593,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.76679,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 136512671,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.55168,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73689618697,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 585363264,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.77186203352103
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s31_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.561895844775,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 304889426,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 142.4,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.54611153733077,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 256231388,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s31_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.1269112931804,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 304889426,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s31_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.9880738296553,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.9880738296553,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.48696783951667,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.48696783951667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292681632,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 292681632,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s31_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.10555806590554,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.10555806590554,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.0755197754741,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.0755197754741,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292681632,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 292681632,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s33",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975487,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9342,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005901,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 155.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 141,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976489,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.599127,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.148,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.269,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.615,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 565910817,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.51,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 48.6940915,
"fastp_mqc-generalstats-fastp-pct_duplication": 38.478699999999996,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.775,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.008,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.075,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.021,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.96528866666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 587791732,
"STAR_mqc-generalstats-star-uniquely_mapped": 280687863,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.577769,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.194111,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.791297,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 380.091234,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 96,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.497164,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.181209,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.818791,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21128555,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 95469159,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 46141718,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 188097792,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 238418002,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.595591,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 237708085,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.538585,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75985126241,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 587791732,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.66756802130512
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s33_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.0039601026691,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 363783172,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 155.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.34120473133841,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 265509066,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s33_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.5596142255052,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 363783172,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s33_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.47934152636228,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.47934152636228,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.41314310031976,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.41314310031976,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293895866,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293895866,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s33_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.55069817824523,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.55069817824523,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.08463481836428,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.08463481836428,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293895866,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293895866,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s34",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975171,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9334,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006984,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 153.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 140,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976366,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.642162,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.136,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.25,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.637,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 561105984,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.11,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 49.56871483333333,
"fastp_mqc-generalstats-fastp-pct_duplication": 41.3286,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.732,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.965,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.11,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.138,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.456808,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 584740848,
"STAR_mqc-generalstats-star-uniquely_mapped": 278064819,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.569779,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.221927,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.758797,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 320.807641,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 82,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.483771,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.210603,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.789397,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21763562,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 81575595,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 47018548,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 160762591,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 207812768,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.637677,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 211864977,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.540839,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75348769155,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 584740848,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.44112948628461
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s34_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.93173040184212,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 345810860,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 153.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 89.68492688576461,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 262212201,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s34_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.49582876522246,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 345810860,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s34_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.09001344130485,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.09001344130485,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.70724888775652,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.70724888775652,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292370424,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 292370424,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s34_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.1766525501909,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.1766525501909,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.48726060087215,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.48726060087215,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292370424,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 292370424,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s35",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97583,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9414,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007733,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 150.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 138,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977092,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.679882,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.112,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.2,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.565,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 442194763,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.68,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 52.186922860309195,
"fastp_mqc-generalstats-fastp-pct_duplication": 42.0264,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.689,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.913,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.137,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.192,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.53593087933939,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 463097980,
"STAR_mqc-generalstats-star-uniquely_mapped": 219239160,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.541114,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.260019,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.716213,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 209.215727,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 51,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.430366,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.251519,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.748481,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 18405057,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 54770422,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 39179892,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 107919657,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 150509030,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.674624,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 150680863,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550714,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 59380032883,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 463097980,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.79257887102196
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s35_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.89680787257831,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 237398657,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 150.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 88.81964373932273,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 205660988,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s35_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.73949048794645,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 237398657,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s35_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.34163125047533,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.34163125047533,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.82790590384792,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.82790590384792,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 231548990,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 231548990,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s35_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.4441769018297,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.4441769018297,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.62595277551745,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.62595277551745,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 231548990,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 231548990,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s36",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975561,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9301,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008215,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976883,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.711035,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.121,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.221,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.638,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 532672524,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.74,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 55.450242916992785,
"fastp_mqc-generalstats-fastp-pct_duplication": 44.2279,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.647,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.863,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.174,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.325,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.65448997593134,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 557387630,
"STAR_mqc-generalstats-star-uniquely_mapped": 264047415,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.543434,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.309567,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.662568,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 204.6841,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.433672,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.305105,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.694895,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 24238824,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 55205369,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 50868399,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 108873876,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 166949853,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.705194,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 164321105,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542585,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70382787330,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 557387630,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.15373111650072
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s36_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.86986559794643,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 285387610,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 145.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.99373247662493,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 245233090,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s36_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.74291174372063,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 285387610,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s36_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.37105021508998,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.37105021508998,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.83828052739534,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.83828052739534,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 278693815,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 278693815,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s36_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.48798768641493,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.48798768641493,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.72081395648316,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.72081395648316,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 278693815,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 278693815,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s37",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975858,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9282,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008563,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 141.8,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 131,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977211,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.739179,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.118,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.215,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.63,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 520513214,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.63,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 57.61438435496967,
"fastp_mqc-generalstats-fastp-pct_duplication": 46.808899999999994,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.622,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.834,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.19,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.379,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.57460426596687,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 545360364,
"STAR_mqc-generalstats-star-uniquely_mapped": 258041093,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.527389,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.35191,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.616038,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 163.986016,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 42,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.398613,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.351495,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.648505,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 24644283,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 45468421,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 51270840,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 89752563,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 147167337,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.73285,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 145693123,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542814,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 68356471648,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 545360364,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.79233905989649
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s37_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.62209996028741,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 279458148,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 141.8,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.33550573910061,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 238146616,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s37_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.29194679279097,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 279458148,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s37_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.3748369655995,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.3748369655995,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.61619580811714,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.61619580811714,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 272680182,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 272680182,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s37_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.49788664509546,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.49788664509546,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.34088820640825,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.34088820640825,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 272680182,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 272680182,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s38",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974843,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9306,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009658,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 140.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 129,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976467,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.726432,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.108,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.194,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.566,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 501417783,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.13,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 59.498203167766974,
"fastp_mqc-generalstats-fastp-pct_duplication": 45.6311,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.607,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.819,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.217,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.426,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.07201094660991,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 528286358,
"STAR_mqc-generalstats-star-uniquely_mapped": 248642258,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.529494,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.339983,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.625597,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 167.418243,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 43,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.398848,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.340144,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.659856,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 24213503,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 46972571,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 50395119,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 92731207,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 147843183,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.719417,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 148228308,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550663,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 65416721068,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 528286358,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 82.96018640251839
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s38_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.69403889344757,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 272110546,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 140.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.90777095553923,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 229560949,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s38_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.3650828258981,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 272110546,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s38_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.94079149020918,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.94079149020918,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.64323684526684,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.64323684526684,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 264143179,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 264143179,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s38_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.09395808021225,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.09395808021225,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.4420246952493,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.4420246952493,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 264143179,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 264143179,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s39",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.972833,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9274,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009392,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.3,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 133,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974338,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.737729,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.109,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.199,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.545,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 470856377,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.36,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 57.37316175341002,
"fastp_mqc-generalstats-fastp-pct_duplication": 45.6691,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.581,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.787,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.166,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.308,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.74884505065049,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 494713366,
"STAR_mqc-generalstats-star-uniquely_mapped": 233409176,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.518424,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.356839,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.608273,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 147.427119,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 37,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.374388,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.357578,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.642422,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 22859158,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 41068610,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 47522656,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 81007949,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 164101280,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.7308,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 133176882,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.55115,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 62036491293,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 494713366,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.90520418178578
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s39_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.58971449086333,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 253053305,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 143.3,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.13408685222383,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 215531987,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s39_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.09562697632798,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 253053305,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s39_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.82428537416956,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.82428537416956,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.59214470596422,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.59214470596422,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 247356683,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 247356683,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s39_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.96414774449414,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.96414774449414,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.17765947369233,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.17765947369233,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 247356683,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 247356683,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s41",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974958,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9329,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006042,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 150.3,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 137,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975988,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.611477,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.16,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.289,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.548,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 564268653,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.36,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 51.402557333333334,
"fastp_mqc-generalstats-fastp-pct_duplication": 38.2276,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.81,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.047,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.125,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.122,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.87953333333334,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 587277200,
"STAR_mqc-generalstats-star-uniquely_mapped": 280012546,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.572526,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.194877,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.789718,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 362.261377,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 88,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.49033,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.183061,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.816939,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 20670165,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 92243623,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 44888008,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 181904052,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 234708349,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.607782,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 230340590,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546246,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74851703964,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 587277200,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.17461085948307
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s41_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.79381993405481,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 427954463,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 150.3,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.70123512372011,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 266333837,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s41_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.41876601502813,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 427954463,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s41_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.68329154273314,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.68329154273314,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.9337123403377,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.9337123403377,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 27.27272727272727,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293638600,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293638600,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s41_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.76408483080903,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.76408483080903,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.82305267066933,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.82305267066933,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293638600,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293638600,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s42",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974942,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9391,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006978,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 152.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 139,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976127,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.652385,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.133,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.239,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.594,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 562746914,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.1,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 50.078402499999996,
"fastp_mqc-generalstats-fastp-pct_duplication": 41.501900000000006,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.735,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.968,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.106,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.114,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.772859,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 586637154,
"STAR_mqc-generalstats-star-uniquely_mapped": 278957689,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.566287,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.229155,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.751031,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 307.416382,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 77,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.477899,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.218068,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.781932,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21959917,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 78742135,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 47342253,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 155158851,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 205211921,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.647832,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 206594565,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.543222,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75511615888,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 586637154,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.51673034046951
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s42_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.41452998585032,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 367700999,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 152.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 89.70795668356185,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 263130102,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s42_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.61933756196517,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 367700999,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s42_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.9748340215083,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.9748340215083,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.74391141171083,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.74391141171083,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293318577,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293318577,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s42_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.06886307102192,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.06886307102192,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.14719802685624,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.14719802685624,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293318577,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293318577,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s43",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975516,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9344,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007501,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145.2,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976736,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.716463,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.131,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.238,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.645,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 560680792,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.88,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 54.93381333333333,
"fastp_mqc-generalstats-fastp-pct_duplication": 45.309,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.697,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.922,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.165,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.283,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.69357833333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 586161470,
"STAR_mqc-generalstats-star-uniquely_mapped": 278082484,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.544151,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.295899,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.678139,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 215.802869,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.438481,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.289967,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.710033,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 23780304,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 58230000,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 50110084,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 114841797,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 163906738,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.711089,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 169348478,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.541962,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73837006916,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 586161470,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.62103642515905
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s43_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.87025276684759,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 355184299,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 145.2,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 88.59316938726798,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 259649512,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s43_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.54521278227013,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 355184299,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s43_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.067472793802,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.067472793802,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.44256693320442,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.44256693320442,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293080735,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293080735,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s43_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.17815723029355,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.17815723029355,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.34658316871949,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.34658316871949,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293080735,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293080735,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s44",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975291,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9359,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008428,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.1,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976656,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.705148,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.124,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.225,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.634,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 515295847,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.49,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 57.265006460538984,
"fastp_mqc-generalstats-fastp-pct_duplication": 43.8042,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.657,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.877,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.201,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.382,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.27306397738303,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 540826240,
"STAR_mqc-generalstats-star-uniquely_mapped": 255522430,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.542111,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.302776,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.669205,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 201.662531,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 52,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.430797,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.298401,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.701599,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 23465907,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 55173026,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 49254945,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 108864764,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 164591990,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.699205,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 162677663,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546028,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 67442158274,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 540826240,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.17412947310578
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s44_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.63532452514343,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 277993834,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 143.1,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.93663783769071,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 237792206,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s44_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.64870753601366,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 277993834,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s44_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.79161749622207,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.79161749622207,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.55057622204639,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.55057622204639,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 270413120,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 270413120,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s44_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.9189230056589,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.9189230056589,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.64867161943285,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.64867161943285,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 270413120,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 270413120,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s45",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975042,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9336,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009106,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 137.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97653,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.756535,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.119,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.212,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.585,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 530238482,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.31,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 61.638507438661335,
"fastp_mqc-generalstats-fastp-pct_duplication": 47.4382,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.643,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.861,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.23,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.453,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.10712264049626,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 557707196,
"STAR_mqc-generalstats-star-uniquely_mapped": 262998938,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.517025,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.366872,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.596757,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 147.247226,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 36,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.375187,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.369476,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.630524,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 24716275,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 42179178,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 51224064,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 83321479,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 140224967,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.749647,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 139623794,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548734,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 68307083744,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 557707196,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.5322990823269
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s45_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.33747198774037,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 287160808,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 137.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.394813890836,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 243703583,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s45_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.75205009095471,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 287160808,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s45_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.53249658625528,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.53249658625528,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.25990221490245,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.25990221490245,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 278853598,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 278853598,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s45_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.68218113864896,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.68218113864896,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.86787763199018,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.86787763199018,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 278853598,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 278853598,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s46",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974971,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9396,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009341,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 142.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 131,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976505,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.708665,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.111,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.2,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.591,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 445694015,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.18,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 58.53320934564765,
"fastp_mqc-generalstats-fastp-pct_duplication": 43.9706,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.606,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.824,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.207,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.404,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.53629977009041,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 469384996,
"STAR_mqc-generalstats-star-uniquely_mapped": 221024969,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.526712,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.330763,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.637888,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 162.264683,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 41,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.393625,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.329129,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.670871,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 22176812,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 45203564,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 46258955,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 89211888,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 147309160,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.702046,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 139855169,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550202,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 58332439732,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 469384996,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.22042216206327
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s46_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.71296988354322,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240620670,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 142.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.84082096224482,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 203808892,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s46_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.52144238595233,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240620670,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s46_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.38530522181412,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.38530522181412,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.66224719244842,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.66224719244842,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 234692498,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 234692498,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s46_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.53085217065609,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.53085217065609,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.63888164260723,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.63888164260723,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 234692498,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 234692498,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s47",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974826,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9328,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009883,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 137.1,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 126,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976431,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.775472,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.107,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.191,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.541,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 552641209,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.01,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 62.220991166666664,
"fastp_mqc-generalstats-fastp-pct_duplication": 48.4052,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.607,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.817,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.231,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.453,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.13470433333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 582808226,
"STAR_mqc-generalstats-star-uniquely_mapped": 273937311,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.508403,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.394518,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.56292,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 132.899325,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 33,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.351296,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.401118,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.598881,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 25820410,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 38550621,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 53387450,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 76176175,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 135973586,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.767808,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 135323364,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.553159,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71275403716,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 582808226,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 82.6999423212613
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s47_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.84017639436216,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 301867030,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 137.1,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.93993553893318,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 253346548,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s47_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.4199851304891,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 301867030,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s47_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.36396291015974,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.36396291015974,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.75153084134638,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.75153084134638,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291404113,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 291404113,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "V4_0001_RNA_0005_23H5VFLT4_s47_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.53258204011692,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.53258204011692,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.50072998898808,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.50072998898808,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291404113,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 291404113,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00087_23H5VFLT4_s17",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977488,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9223,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005212,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 146.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 136,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978258,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.422249,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.151,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.351,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.064,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 574954705,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.67,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 52.93903433333333,
"fastp_mqc-generalstats-fastp-pct_duplication": 28.9735,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.496,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.697,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.166,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.644,
"fastp_mqc-generalstats-fastp-pct_surviving": 99.15362266666666,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 594921736,
"STAR_mqc-generalstats-star-uniquely_mapped": 284571417,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.716689,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.151676,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.839336,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 572.168989,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 273,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.621452,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.140935,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.859065,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 24037242,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 146518007,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 52332236,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 289592678,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 521750832,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.420048,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 345025790,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.52471,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76323073841,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 594921736,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.00415308994795
},
{
"Sample": "tih_rna_sample_00087_23H5VFLT4_s17_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.14437921241739,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 413718349,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 146.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 91.49126129760369,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 272150700,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00087_23H5VFLT4_s17_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.63317017401563,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 413718349,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00087_23H5VFLT4_s17_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.21807765315873,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.21807765315873,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.78770945108789,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.78770945108789,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297460868,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297460868,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00087_23H5VFLT4_s17_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.259966389932,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.259966389932,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.77870990666966,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.77870990666966,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297460868,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297460868,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00088_23H5VFLT4_s02",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975045,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.865,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006743,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976191,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.57335,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.052,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.118,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.443,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 573318611,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.7,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 60.461982000000006,
"fastp_mqc-generalstats-fastp-pct_duplication": 36.2014,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.318,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.546,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.345,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.222,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.77212866666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 592632772,
"STAR_mqc-generalstats-star-uniquely_mapped": 283571762,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.730034,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.13712,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.847217,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 401.980523,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 187,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.607964,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.127988,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.872012,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 16022077,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 109161774,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 34984489,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 216157032,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 292574668,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.569484,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 255137738,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.58331,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73734810971,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 592632772,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.13307796068321
},
{
"Sample": "tih_rna_sample_00088_23H5VFLT4_s02_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.05227959653149,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 412690334,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 136.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 93.83593825283762,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 278051261,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00088_23H5VFLT4_s02_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.41033511667732,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 412690334,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00088_23H5VFLT4_s02_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.55424908226304,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.55424908226304,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.37319719541057,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.37319719541057,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 27.27272727272727,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296316386,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296316386,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00088_23H5VFLT4_s02_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.64054893677057,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.64054893677057,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.67945596312745,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.67945596312745,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296316386,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296316386,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00089_23H5VFLT4_s39",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97655,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9032,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00495,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.2,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 137,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97744,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.480517,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.18,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.398,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 3.909,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 574927301,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.83,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 52.20386783333333,
"fastp_mqc-generalstats-fastp-pct_duplication": 33.616099999999996,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.49,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.726,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.981,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.02,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.96984433333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593819066,
"STAR_mqc-generalstats-star-uniquely_mapped": 284521212,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.733013,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.122177,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.868338,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 532.953618,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 256,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.630585,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.110095,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.889905,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 16848243,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 136184846,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 37861598,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 269090179,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 392020115,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.478139,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 309891015,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.55348,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76749361747,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593819066,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.8172889655623
},
{
"Sample": "tih_rna_sample_00089_23H5VFLT4_s39_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.0587256897502,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 390314996,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 148.2,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 93.8005271120749,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 278502707,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00089_23H5VFLT4_s39_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.74365812604657,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 390314996,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00089_23H5VFLT4_s39_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.31783026986878,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.31783026986878,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.10969859583874,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.10969859583874,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296909533,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296909533,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00089_23H5VFLT4_s39_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.36984168844455,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.36984168844455,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.61045243221257,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.61045243221257,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296909533,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296909533,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00090_23H5VFLT4_s32",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974779,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9154,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.010878,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 124.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 119,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976163,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.554072,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.095,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.182,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.635,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 559004895,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.22,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 71.262852,
"fastp_mqc-generalstats-fastp-pct_duplication": 31.8882,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.505,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.726,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.908,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.576,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.71046833333334,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 592262810,
"STAR_mqc-generalstats-star-uniquely_mapped": 276049247,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.658618,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.125615,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.850317,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 384.616645,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 112,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.518069,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.119104,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.880896,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 15507541,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 114694057,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 33624024,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 227609416,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 291811453,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.548045,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 267676074,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.596529,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 69879476632,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 592262810,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 80.9337245038353
},
{
"Sample": "tih_rna_sample_00090_23H5VFLT4_s32_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.69125028326455,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 352864597,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 124.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 93.22281167713366,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 276062022,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00090_23H5VFLT4_s32_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.37073714239548,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 352864597,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00090_23H5VFLT4_s32_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 59,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 120.96618531222651,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 120.96618531222651,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.35134160792748,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.35134160792748,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296131405,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296131405,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00090_23H5VFLT4_s32_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 59,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.10140793071238,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.10140793071238,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.98569482509137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.98569482509137,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296131405,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296131405,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00096_23H5VFLT4_s11",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977328,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8843,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005127,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978145,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.465567,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.213,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.439,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.055,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 576555130,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.08,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 55.046829333333335,
"fastp_mqc-generalstats-fastp-pct_duplication": 31.8802,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.286,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.425,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.533,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.651,
"fastp_mqc-generalstats-fastp-pct_surviving": 99.02733266666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 594163996,
"STAR_mqc-generalstats-star-uniquely_mapped": 285438543,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.755978,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.145658,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.844791,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 521.828116,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 269,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.649743,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.134704,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.865296,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21222955,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 136329997,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 46458875,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 269453970,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 400314222,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.46318,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 318959170,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.544616,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75721839868,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 594163996,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.6305990126144
},
{
"Sample": "tih_rna_sample_00096_23H5VFLT4_s11_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.10281474586195,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 308569865,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 143.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 92.18740813773576,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 273872194,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00096_23H5VFLT4_s11_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.54589679879999,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 308569865,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00096_23H5VFLT4_s11_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.36477788532983,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.36477788532983,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.00495558547036,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.00495558547036,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297081998,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297081998,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00096_23H5VFLT4_s11_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.4197148256691,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.4197148256691,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.05221322101626,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.05221322101626,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297081998,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297081998,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00097_23H5VFLT4_s12",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976449,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8635,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005066,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 123,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977323,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.509809,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.252,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.465,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.039,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 573284651,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.38,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 66.51364199999999,
"fastp_mqc-generalstats-fastp-pct_duplication": 31.5507,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.642,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.872,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.793,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.909,
"fastp_mqc-generalstats-fastp-pct_surviving": 99.07311566666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 594438694,
"STAR_mqc-generalstats-star-uniquely_mapped": 283502518,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.714691,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.148545,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.841174,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 438.1313,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 198,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.601207,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.140086,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.859914,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 20261418,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 124374579,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 43512304,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 246399636,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 369890717,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.507227,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 292923620,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.524963,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72204282869,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 594438694,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.42256024319525
},
{
"Sample": "tih_rna_sample_00097_23H5VFLT4_s12_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.58574057219425,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 364245872,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 131,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 92.50767144710805,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 274950697,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00097_23H5VFLT4_s12_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.99244688038581,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 364245872,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00097_23H5VFLT4_s12_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.35525467324305,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.35525467324305,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.15523073636024,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.15523073636024,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297219347,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297219347,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00097_23H5VFLT4_s12_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.42308953393939,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.42308953393939,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.19348315514519,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.19348315514519,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297219347,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297219347,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00104_23H5VFLT4_s20",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973779,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8685,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.013782,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 117.3,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 113,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975762,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.780578,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.265,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.561,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.405,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 389097422,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 92.7,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 79.92190029168465,
"fastp_mqc-generalstats-fastp-pct_duplication": 46.4225,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.281,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.426,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.606,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.837,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.26161987365393,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 414319340,
"STAR_mqc-generalstats-star-uniquely_mapped": 192034180,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.491532,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.354493,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.585632,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 80.370153,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 28,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.22595,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.370784,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.629216,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 16554869,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 28093390,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 33807248,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 55850573,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 109558403,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.76982,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 95368014,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.5883,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 46841535902,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 414319340,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 78.31617564105588
},
{
"Sample": "tih_rna_sample_00104_23H5VFLT4_s20_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.06171847281342,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 210824603,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 117.3,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 89.08600259886492,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 184550269,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00104_23H5VFLT4_s20_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.67717162375213,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 210824603,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00104_23H5VFLT4_s20_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 116.01701339840906,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 116.01701339840906,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.13168057071618,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.13168057071618,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 207159670,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 207159670,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00104_23H5VFLT4_s20_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 116.17218479349769,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 116.17218479349769,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.58533753333404,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.58533753333404,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 207159670,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 207159670,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00105_23H5VFLT4_s21",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975606,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8497,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.015431,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 103,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 100,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977292,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.656644,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.228,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.493,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.246,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 102497818,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 91.6,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 89.44385439851939,
"fastp_mqc-generalstats-fastp-pct_duplication": 31.474600000000002,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.273,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.392,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.484,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.505,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.17765662413635,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 110239562,
"STAR_mqc-generalstats-star-uniquely_mapped": 50488693,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.207738,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.512015,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.44433,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 21.631045,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 8,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.035148,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.53233,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.46767,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 9893525,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 8691792,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 19952434,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 17314875,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 62502539,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.646511,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 38968469,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.535831,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 11139357982,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 110239562,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 75.1102229281101
},
{
"Sample": "tih_rna_sample_00105_23H5VFLT4_s21_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 67.50388607332226,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 56720632,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 103,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 79.21448200238676,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 43662849,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00105_23H5VFLT4_s21_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 66.32014181880302,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 45.45454545454545,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 56720632,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00105_23H5VFLT4_s21_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 103.50351518994606,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 103.50351518994606,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 66.98325217582425,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 66.98325217582425,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 55119781,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 55119781,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 102,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 102,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00105_23H5VFLT4_s21_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 103.63619860898939,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 103.63619860898939,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 66.29098732838722,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 66.29098732838722,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 55119781,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 55119781,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 102,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 102,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00111_23H5VFLT4_s30",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975487,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8734,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.012119,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 127.2,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977165,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.740024,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.092,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.207,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.098,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 320916916,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.96,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 71.23561329462872,
"fastp_mqc-generalstats-fastp-pct_duplication": 48.9172,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.213,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.343,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.683,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.218,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.60871735561565,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 337195840,
"STAR_mqc-generalstats-star-uniquely_mapped": 158412477,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.53247,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.415971,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.538967,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 76.345376,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 35,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.23279,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.42911,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.57089,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 18518352,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 24636871,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 37723194,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 48877382,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 112596413,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.731055,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 90687111,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.552354,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 40437946364,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 337195840,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.1789594207345
},
{
"Sample": "tih_rna_sample_00111_23H5VFLT4_s30_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.67266117470284,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 170976689,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 127.2,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.42498970331307,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 145710735,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00111_23H5VFLT4_s30_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.20383844514595,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 170976689,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00111_23H5VFLT4_s30_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.86521458864974,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.86521458864974,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.77481931174384,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.77481931174384,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 168597920,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 168597920,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00111_23H5VFLT4_s30_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.9961556050039,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.9961556050039,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.03805471347127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.03805471347127,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 168597920,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 168597920,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00115_23H5VFLT4_s35",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976246,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8896,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008812,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 114,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 109,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977631,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.706945,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.115,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.264,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.075,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 475978287,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.46,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 81.24170158058239,
"fastp_mqc-generalstats-fastp-pct_duplication": 41.3759,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.375,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.583,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.338,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.136,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.7969408303174,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 497553714,
"STAR_mqc-generalstats-star-uniquely_mapped": 234985226,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.636811,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.305494,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.665063,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 146.925614,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 67,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.407169,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.308623,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.691377,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 22238628,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 49818900,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 45491055,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 99034544,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 168054302,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.700716,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 148909926,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.555287,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 55008374523,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 497553714,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.88350245134798
},
{
"Sample": "tih_rna_sample_00115_23H5VFLT4_s35_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.41983565431408,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 251806235,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 114,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 89.72755411891067,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 223221389,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00115_23H5VFLT4_s35_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.36660958683127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 251806235,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00115_23H5VFLT4_s35_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 113.17445736923993,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 113.17445736923993,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.50098636001294,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.50098636001294,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 248776857,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 248776857,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00115_23H5VFLT4_s35_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 113.31016280585939,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 113.31016280585939,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.1414119956481,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.1414119956481,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 248776857,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 248776857,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00116_23H5VFLT4_s36",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97632,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.7171,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006906,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 122.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 117,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97749,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.567307,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.176,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.318,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.008,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 571723560,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.28,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 73.91312216666667,
"fastp_mqc-generalstats-fastp-pct_duplication": 32.4103,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.623,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.834,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.979,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.752,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.82025233333334,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 592921514,
"STAR_mqc-generalstats-star-uniquely_mapped": 282476016,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.723291,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.158518,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.825665,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 354.027937,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 165,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.589715,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.152354,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.847646,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 19356717,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 107694290,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 41036529,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 213744558,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 284648584,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.56339,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 258875620,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550385,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 69160790033,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 592921514,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.30148980692593
},
{
"Sample": "tih_rna_sample_00116_23H5VFLT4_s36_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.94808711071292,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 354194241,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 122.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 92.51410735620567,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 274268023,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00116_23H5VFLT4_s36_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.13007060939583,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 354194241,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00116_23H5VFLT4_s36_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 119.41449654329797,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 119.41449654329797,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.67671114013258,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.67671114013258,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296460757,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296460757,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00116_23H5VFLT4_s36_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 119.51986539317917,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 119.51986539317917,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.58490968124309,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.58490968124309,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296460757,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296460757,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00117_23H5VFLT4_s37",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975763,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9178,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007478,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 124,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976901,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.788686,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.13,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.269,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.107,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 398416798,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.15,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 66.98245964614813,
"fastp_mqc-generalstats-fastp-pct_duplication": 52.2887,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.329,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.514,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.484,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.587,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.56755532901641,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 414808524,
"STAR_mqc-generalstats-star-uniquely_mapped": 197342899,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.571948,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.351539,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.614036,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 93.402196,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 43,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.281527,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.35574,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.64426,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 15403765,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 27896838,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 31674119,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 55325345,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 103307071,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.782789,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 90101202,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.558696,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 50484508339,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 414808524,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.57286211445047
},
{
"Sample": "tih_rna_sample_00117_23H5VFLT4_s37_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.24006215111054,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 210418389,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 131.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.89249525643788,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 188514909,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00117_23H5VFLT4_s37_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.81330349242987,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 210418389,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00117_23H5VFLT4_s37_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.67623270441761,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.67623270441761,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.33472314317589,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.33472314317589,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 207404262,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 207404262,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00117_23H5VFLT4_s37_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.7670259929374,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.7670259929374,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.78106976666152,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.78106976666152,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 207404262,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 207404262,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00118_23H5VFLT4_s38",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977113,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8347,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005152,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 142.2,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978007,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.488324,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.352,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.793,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 4.419,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 574321026,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.83,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 57.23737966666667,
"fastp_mqc-generalstats-fastp-pct_duplication": 33.0672,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.505,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.758,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.417,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.217,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.92143466666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593528608,
"STAR_mqc-generalstats-star-uniquely_mapped": 284381461,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.730334,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.126637,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.863343,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 504.629596,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 240,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.623844,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.115095,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.884905,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 17338073,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 133303526,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 38648054,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 263481646,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 379134973,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.485808,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 305187759,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546985,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75089364783,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593528608,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.54266858631196
},
{
"Sample": "tih_rna_sample_00118_23H5VFLT4_s38_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.38893828081639,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 338019276,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 142.2,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 93.3747621479435,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 277102963,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00118_23H5VFLT4_s38_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.73748323306661,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 338019276,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00118_23H5VFLT4_s38_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.43708685394992,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.43708685394992,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.54258024522596,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.54258024522596,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296764304,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296764304,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00118_23H5VFLT4_s38_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.50309884641652,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.50309884641652,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.59649143617537,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.59649143617537,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296764304,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296764304,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00121_23H5VFLT4_s41",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974984,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8947,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008621,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 129,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 121,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976393,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.547795,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.172,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.4,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.088,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 568587616,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.83,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 66.70064016666667,
"fastp_mqc-generalstats-fastp-pct_duplication": 33.3101,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.317,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.5,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.609,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.968,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.81085033333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 592865102,
"STAR_mqc-generalstats-star-uniquely_mapped": 281095342,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.745584,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.200506,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.780626,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 369.091949,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 189,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.615443,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.19448,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.80552,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 25775463,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 106759746,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 54316358,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 211468601,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 314091931,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.543073,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 270896228,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.561668,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71341438602,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 592865102,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.54727808521181
},
{
"Sample": "tih_rna_sample_00121_23H5VFLT4_s41_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.04606657923705,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 309503591,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 129,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 89.77644361330616,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 266126602,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00121_23H5VFLT4_s41_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.4726766861005,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 309503591,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00121_23H5VFLT4_s41_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.35814895038298,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.35814895038298,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.89327109145634,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.89327109145634,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 27.27272727272727,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296432551,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296432551,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00121_23H5VFLT4_s41_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.47103288936714,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.47103288936714,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.0422189806613,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.0422189806613,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296432551,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296432551,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00122_23H5VFLT4_s42",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976871,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9074,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007794,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 118.8,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 113,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978084,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.557867,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.303,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.618,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.13,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 405224958,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.35,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 77.41278387721063,
"fastp_mqc-generalstats-fastp-pct_duplication": 31.5985,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.318,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.464,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.855,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.629,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.81027827887115,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 424453366,
"STAR_mqc-generalstats-star-uniquely_mapped": 200246225,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.673149,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.28985,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.692693,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 205.086003,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 97,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.493975,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.288635,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.711365,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 26806312,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 66066271,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 54929542,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 131272400,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 231639256,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.553519,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 189510223,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.528185,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 48279741550,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 424453366,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.27438232765299
},
{
"Sample": "tih_rna_sample_00122_23H5VFLT4_s42_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 70.92749099108379,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 214781991,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 118.8,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 86.08203380344969,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 182689045,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00122_23H5VFLT4_s42_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 69.85736410575225,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 214781991,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00122_23H5VFLT4_s42_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 116.38233479811772,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 116.38233479811772,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 70.93104807678625,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 70.93104807678625,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 212226683,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 212226683,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00122_23H5VFLT4_s42_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 116.48387567269286,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 116.48387567269286,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 70.51915637003493,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 70.51915637003493,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 212226683,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 212226683,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00124_23H5VFLT4_s31",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976863,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0.06,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9137,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006274,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145.2,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977729,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.47817,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.104,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.229,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.045,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 576202399,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.87,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 53.864068333333336,
"fastp_mqc-generalstats-fastp-pct_duplication": 32.5992,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.371,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.58,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.694,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.276,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.97451866666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593847112,
"STAR_mqc-generalstats-star-uniquely_mapped": 284668699,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.77679,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.146112,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.841934,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 513.084189,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 284,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.664284,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.13504,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.86496,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 20737989,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 132830829,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 45538628,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 262404747,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 395783263,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.47517,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 311668958,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.538354,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75958383661,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593847112,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.66037823962016
},
{
"Sample": "tih_rna_sample_00124_23H5VFLT4_s31_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.56005731071026,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 350836933,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 145.2,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 91.92879900710875,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 272958259,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00124_23H5VFLT4_s31_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.46102495318713,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 350836933,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00124_23H5VFLT4_s31_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.90636270703965,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.90636270703965,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.31472968826735,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.31472968826735,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296923556,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296923556,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00124_23H5VFLT4_s31_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.95737242214625,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.95737242214625,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.89578757796701,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.89578757796701,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296923556,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296923556,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00127_23H5VFLT4_s08",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977352,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8549,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00711,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 121.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 115,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978432,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.559995,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.201,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.417,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.066,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 440086985,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.03,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 74.23448208937955,
"fastp_mqc-generalstats-fastp-pct_duplication": 31.591599999999996,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.36,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.543,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.008,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.077,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.84390835955985,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 456491162,
"STAR_mqc-generalstats-star-uniquely_mapped": 216907082,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.712373,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.2067,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.777287,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 257.55103,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 134,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.559087,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.201734,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.798266,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 20064936,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 79397534,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 41893053,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 157537463,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 232503664,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.556013,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 202675940,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.539211,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 52864289580,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 456491162,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.16806943289959
},
{
"Sample": "tih_rna_sample_00127_23H5VFLT4_s08_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 73.74387717649876,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 230915172,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 121.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.36101075709325,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 206245014,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00127_23H5VFLT4_s08_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 72.47339033399524,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 230915172,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00127_23H5VFLT4_s08_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 118.43512273300047,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 118.43512273300047,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 73.77866426137048,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 73.77866426137048,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 228245581,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 228245581,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00127_23H5VFLT4_s08_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 118.53107094765616,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 118.53107094765616,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 73.1327133072506,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 73.1327133072506,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 228245581,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 228245581,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00163_23H5VFLT4_s43",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977714,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9093,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005145,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 139.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978495,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.496143,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.207,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.437,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.047,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 576096825,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.09,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 57.787192,
"fastp_mqc-generalstats-fastp-pct_duplication": 33.2767,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.376,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.569,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.992,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.087,
"fastp_mqc-generalstats-fastp-pct_surviving": 99.033701,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 594202206,
"STAR_mqc-generalstats-star-uniquely_mapped": 285470399,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.759161,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.152613,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.837226,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 479.142734,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 247,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.642815,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.142182,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.857818,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21119023,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 127415905,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 45922890,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 251929546,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 385496045,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.49359,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 300909809,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.536163,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74698472274,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 594202206,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.92728542161463
},
{
"Sample": "tih_rna_sample_00163_23H5VFLT4_s43_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.8883605692129,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 400736962,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 139.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 92.21033555031937,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 273957924,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00163_23H5VFLT4_s43_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.18062322316331,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 400736962,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00163_23H5VFLT4_s43_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.54479584008814,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.54479584008814,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.76853680585741,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.76853680585741,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297101103,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297101103,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00163_23H5VFLT4_s43_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.59787477800108,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.59787477800108,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.64895958251898,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.64895958251898,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297101103,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297101103,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00218_23H5VFLT4_s10",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977817,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8863,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.004937,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978516,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.47086,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.147,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.334,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.607,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 578373952,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.2,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 53.7002025,
"fastp_mqc-generalstats-fastp-pct_duplication": 31.8882,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.44,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.672,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.637,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.095,
"fastp_mqc-generalstats-fastp-pct_surviving": 99.13569266666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 594814156,
"STAR_mqc-generalstats-star-uniquely_mapped": 286112204,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.743,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.104729,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.885981,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 554.253401,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 257,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.634539,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.093142,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.906858,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 14547116,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 141635441,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 33107360,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 280078786,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 438027321,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.468535,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 316122734,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.538126,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76238075696,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 594814156,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.29623151305888
},
{
"Sample": "tih_rna_sample_00218_23H5VFLT4_s10_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.39802947005754,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 348862062,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 145.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 94.80694773511745,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 281962573,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00218_23H5VFLT4_s10_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.419296255933,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 348862062,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00218_23H5VFLT4_s10_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.04850725173392,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.04850725173392,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.36361936112387,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.36361936112387,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297407078,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297407078,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00218_23H5VFLT4_s10_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.09601071767364,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.09601071767364,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.96999230972509,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.96999230972509,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297407078,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297407078,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00220_23H5VFLT4_s16",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976067,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8347,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006281,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 138.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977182,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.67145,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.109,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.237,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.072,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 575615737,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.82,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 59.16363,
"fastp_mqc-generalstats-fastp-pct_duplication": 45.7744,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.262,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.426,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.569,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.952,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.99202166666666,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593952130,
"STAR_mqc-generalstats-star-uniquely_mapped": 284551680,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.71228,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.204416,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.776708,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 281.89473,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 133,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.55496,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.197059,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.802942,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 19048639,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 77616236,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 40402313,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 153514709,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 192959974,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.667233,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 197647807,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.566627,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74873108377,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593952130,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.66382091777976
},
{
"Sample": "tih_rna_sample_00220_23H5VFLT4_s16_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.677355056346,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 310771885,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 138.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 92.2644863652564,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 274003441,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00220_23H5VFLT4_s16_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.83443182316276,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 310771885,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00220_23H5VFLT4_s16_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.10603676427593,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.10603676427593,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.45582693577498,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.45582693577498,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 27.27272727272727,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296976065,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296976065,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00220_23H5VFLT4_s16_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.1803972855523,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.1803972855523,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.26862641680398,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.26862641680398,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296976065,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296976065,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00235_23H5VFLT4_s07",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977604,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.878,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005645,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 146.1,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 136,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978403,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.436489,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.112,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.227,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.038,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 576928444,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.96,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 53.544883,
"fastp_mqc-generalstats-fastp-pct_duplication": 29.8203,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.315,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.502,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.885,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.627,
"fastp_mqc-generalstats-fastp-pct_surviving": 99.05568166666666,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 594334090,
"STAR_mqc-generalstats-star-uniquely_mapped": 285156544,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.780783,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.116812,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.873214,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 577.353711,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 297,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.665659,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.104563,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.895437,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 17367677,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 148730346,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 39293016,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 293730077,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 490574335,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.434025,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 336378024,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.53992,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76177343337,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 594334090,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.5302370097968
},
{
"Sample": "tih_rna_sample_00235_23H5VFLT4_s07_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.03162379260908,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 492588422,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 146.1,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 93.35127924430516,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 277409238,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00235_23H5VFLT4_s07_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.68953323278373,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 492588422,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00235_23H5VFLT4_s07_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.0781573946061,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.0781573946061,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.31904540348356,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.31904540348356,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297167045,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297167045,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00235_23H5VFLT4_s07_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.12674093118233,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.12674093118233,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.77234387795454,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.77234387795454,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297167045,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297167045,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00248_23H5VFLT4_s01",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976091,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8687,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005759,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 128,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97706,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.496531,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.186,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.382,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.047,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 573159226,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.35,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 61.44057349999999,
"fastp_mqc-generalstats-fastp-pct_duplication": 30.5286,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.349,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.54,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.965,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.948,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.961544,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593769264,
"STAR_mqc-generalstats-star-uniquely_mapped": 283087978,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.721668,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.152736,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.83589,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 464.075618,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 223,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.614838,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.143613,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.856387,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21287875,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 126942848,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 45919075,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 251303913,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 355873404,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.493671,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 300642471,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542424,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73651605310,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593769264,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.6037165388515
},
{
"Sample": "tih_rna_sample_00248_23H5VFLT4_s01_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 75.02212831806753,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 308063417,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 136.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 92.29873070695017,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 274020747,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00248_23H5VFLT4_s01_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 74.62862943088894,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 308063417,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00248_23H5VFLT4_s01_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.03982391382253,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.03982391382253,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 74.87350402228766,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 74.87350402228766,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296884632,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296884632,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00248_23H5VFLT4_s01_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.10518423533624,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.10518423533624,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 75.13404034565298,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 75.13404034565298,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296884632,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296884632,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00251_23H5VFLT4_s03",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976855,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8475,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005872,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 142,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977831,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.539654,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.272,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.593,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.05,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 570116642,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.18,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 57.2910195,
"fastp_mqc-generalstats-fastp-pct_duplication": 37.2667,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.355,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.556,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.058,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.289,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.85577933333334,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593134676,
"STAR_mqc-generalstats-star-uniquely_mapped": 282278922,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.729338,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.181091,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.806241,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 419.891712,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 197,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.608337,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.171905,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.828095,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 23263664,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 112064931,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 49786669,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 221657383,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 305618162,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.536485,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 274926770,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545972,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74950990505,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593134676,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.40076278092214
},
{
"Sample": "tih_rna_sample_00251_23H5VFLT4_s03_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.15539648007515,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 341017711,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 142,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.9186725747931,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 269635087,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00251_23H5VFLT4_s03_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.72413466361115,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 341017711,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00251_23H5VFLT4_s03_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.31517643052115,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.31517643052115,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.10917013050363,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.10917013050363,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296567338,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296567338,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00251_23H5VFLT4_s03_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.3877898651132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.3877898651132,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.47232072694105,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.47232072694105,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296567338,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296567338,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00252_23H5VFLT4_s04",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976211,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8713,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.0057,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 146.1,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 136,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97712,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.60002,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.075,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.153,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.056,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 574001167,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.77,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 54.49035816666667,
"fastp_mqc-generalstats-fastp-pct_duplication": 41.4541,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.309,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.47,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.599,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.89,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.80128766666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 592807726,
"STAR_mqc-generalstats-star-uniquely_mapped": 283872381,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.749162,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.163549,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.822322,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 376.957817,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 200,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.620136,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.152502,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.847498,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 17916545,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 99567401,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 39110829,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 196648972,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 242978100,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.5966,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 239138557,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.551485,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75841923630,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 592807726,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.84481631536755
},
{
"Sample": "tih_rna_sample_00252_23H5VFLT4_s04_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.99064993425068,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 311532671,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 146.1,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 92.76715533225017,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 274965432,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00252_23H5VFLT4_s04_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.98827907118779,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 311532671,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00252_23H5VFLT4_s04_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.01971021882397,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.01971021882397,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.69287556405375,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.69287556405375,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296403863,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296403863,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00252_23H5VFLT4_s04_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.075620809301,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.075620809301,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.4342696437025,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.4342696437025,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296403863,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296403863,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00254_23H5VFLT4_s05",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975348,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.7501,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007918,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 125.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 119,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976542,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.603996,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.429,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.895,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.023,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 561168067,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.59,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 70.90977883333333,
"fastp_mqc-generalstats-fastp-pct_duplication": 35.4344,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.496,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.728,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.867,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.553,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.64129333333334,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591847760,
"STAR_mqc-generalstats-star-uniquely_mapped": 276949444,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.698335,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.129655,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.850588,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 343.332015,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 143,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.560538,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.122335,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.877665,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 14175235,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 101696886,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 30754802,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 201763414,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 241418359,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.599213,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 237204622,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.583011,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70175847712,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591847760,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 82.65395204956786
},
{
"Sample": "tih_rna_sample_00254_23H5VFLT4_s05_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.00247043944037,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 376461827,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 125.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 94.36793880912889,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 279257266,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00254_23H5VFLT4_s05_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.45183464760782,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 376461827,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00254_23H5VFLT4_s05_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.50705241158639,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.50705241158639,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.98263647026135,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.98263647026135,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295923880,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295923880,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00254_23H5VFLT4_s05_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.6158720073554,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.6158720073554,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.4178505191817,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.4178505191817,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295923880,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295923880,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00261_23H5VFLT4_s06",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973459,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8585,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007272,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 140.4,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974689,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.620277,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.138,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.321,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.068,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 550039650,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.74,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 58.29884450644869,
"fastp_mqc-generalstats-fastp-pct_duplication": 41.7207,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.243,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.392,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.387,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.296,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.7082746178198,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 574713108,
"STAR_mqc-generalstats-star-uniquely_mapped": 272244498,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.725064,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.211998,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.769076,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 314.390112,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 152,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.579319,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.204242,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.795758,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 22036109,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 85856218,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 46814183,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 169830567,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 250304600,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.615766,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 220824058,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.567305,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72197809708,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 574713108,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.57535654757781
},
{
"Sample": "tih_rna_sample_00261_23H5VFLT4_s06_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.4427901096293,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291116986,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 140.4,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.81085549209364,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 260950945,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00261_23H5VFLT4_s06_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.83566494698516,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291116986,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00261_23H5VFLT4_s06_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.99571224326417,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.99571224326417,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.56907798048545,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.56907798048545,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 287356554,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 287356554,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00261_23H5VFLT4_s06_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.0890155962825,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.0890155962825,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.64640189579619,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.64640189579619,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 287356554,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 287356554,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00272_23H5VFLT4_s09",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977281,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8514,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005014,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 142.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 133,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97811,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.514165,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.222,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.478,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.056,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 577174484,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.2,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 55.6135515,
"fastp_mqc-generalstats-fastp-pct_duplication": 35.379599999999996,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.284,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.437,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.472,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.54,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.96241466666666,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593774488,
"STAR_mqc-generalstats-star-uniquely_mapped": 285598259,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.758054,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.138882,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.850852,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 477.358409,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 247,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.644161,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.128499,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.871501,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 18392451,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 124740809,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 40276909,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 246753217,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 342603611,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.511587,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 290007094,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545741,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75595660726,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593774488,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.92513931904026
},
{
"Sample": "tih_rna_sample_00272_23H5VFLT4_s09_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.7964683586813,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 360787468,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 142.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 93.14523125823486,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 276536310,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00272_23H5VFLT4_s09_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.21471912158755,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 360787468,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00272_23H5VFLT4_s09_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.2400391510253,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.2400391510253,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.37715897262058,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.37715897262058,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296887244,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296887244,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00272_23H5VFLT4_s09_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.29430311259853,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.29430311259853,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.57268368456054,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.57268368456054,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296887244,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296887244,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00274_23H5VFLT4_s14",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975892,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8686,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007324,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 119.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 115,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977094,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.604528,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.095,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.209,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.129,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 376601357,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.49,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 76.96677356372517,
"fastp_mqc-generalstats-fastp-pct_duplication": 35.3206,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.345,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.493,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.787,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.421,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.70995588066553,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 392539082,
"STAR_mqc-generalstats-star-uniquely_mapped": 185446001,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.655763,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.305136,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.67655,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 165.431394,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 82,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.459723,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.303893,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.696107,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 23352836,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 53492869,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 47899095,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 106202235,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 190118129,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.6001,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 156976267,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.533119,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 45108445495,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 392539082,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.29761388220544
},
{
"Sample": "tih_rna_sample_00274_23H5VFLT4_s14_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 72.33692115008526,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 198834595,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 119.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.00615038377248,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 170766572,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00274_23H5VFLT4_s14_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 70.7716185930731,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 198834595,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00274_23H5VFLT4_s14_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 117.70213554939734,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 117.70213554939734,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 72.38610646934873,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 72.38610646934873,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 196269541,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 196269541,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00274_23H5VFLT4_s14_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 117.79201283198599,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 117.79201283198599,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 71.51231775311597,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 71.51231775311597,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 196269541,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 196269541,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00280_23H5VFLT4_s18",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97677,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9184,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006523,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 156.7,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 144,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977544,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.445899,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.134,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.286,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.916,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 569188144,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.87,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 47.162942,
"fastp_mqc-generalstats-fastp-pct_duplication": 31.752799999999997,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.444,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.664,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.515,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.625,
"fastp_mqc-generalstats-fastp-pct_surviving": 99.03319766666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 594199186,
"STAR_mqc-generalstats-star-uniquely_mapped": 281854452,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.738655,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.103224,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.885065,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 605.705245,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 281,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.639381,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.089819,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.910181,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 14646841,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 148424420,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 34164570,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 292934305,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 459893951,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.44299,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 330974763,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.554759,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77998563525,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 594199186,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.55336569930996
},
{
"Sample": "tih_rna_sample_00280_23H5VFLT4_s18_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.2880980551341,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 453375690,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 156.7,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 94.1947497046891,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 279852218,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00280_23H5VFLT4_s18_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.20634441812375,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 453375690,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00280_23H5VFLT4_s18_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.36103029262648,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.36103029262648,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.25466444235613,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.25466444235613,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297099593,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297099593,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00280_23H5VFLT4_s18_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.4036293142953,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.4036293142953,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.98557148620742,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.98557148620742,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297099593,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297099593,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00377_23H5VFLT4_s23",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976589,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8197,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006436,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 139.3,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 129,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977595,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.584796,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.162,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.378,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.311,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 568760257,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.34,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 58.88481483333333,
"fastp_mqc-generalstats-fastp-pct_duplication": 37.5909,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.363,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.552,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.591,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.842,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.901979,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593411874,
"STAR_mqc-generalstats-star-uniquely_mapped": 279925193,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.716492,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.123513,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.861126,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 405.182023,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 178,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.592158,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.112211,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.887789,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 13692658,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 108332932,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 30707771,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 214093586,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 269725413,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.581032,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 248620551,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545784,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74650014723,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593411874,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.1850555599596
},
{
"Sample": "tih_rna_sample_00377_23H5VFLT4_s23_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.68359434725478,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 408257675,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 139.3,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 94.54213786089491,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 280512136,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00377_23H5VFLT4_s23_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.7014961012227,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 408257675,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00377_23H5VFLT4_s23_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.77144390272178,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.77144390272178,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.33540888515117,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.33540888515117,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296705937,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296705937,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00377_23H5VFLT4_s23_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.84226949594205,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.84226949594205,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.962641539625,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.962641539625,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296705937,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296705937,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00378_23H5VFLT4_s24",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977965,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8708,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006345,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 118.8,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 113,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978993,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.522,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.221,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.39,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.077,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 337674527,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.72,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 77.39190327514585,
"fastp_mqc-generalstats-fastp-pct_duplication": 29.5914,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.609,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.808,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 2.05,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 5.471,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.94794359016277,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 351290946,
"STAR_mqc-generalstats-star-uniquely_mapped": 166371983,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.674426,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.239509,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.747309,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 198.43289,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 98,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.495856,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.235259,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.764741,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 19583850,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 63660047,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 40496204,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 126355247,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 210188740,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.518688,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 169080437,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.507741,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 40083705070,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 351290946,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.82967991597948
},
{
"Sample": "tih_rna_sample_00378_23H5VFLT4_s24_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 50,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 71.36372400751705,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 177513010,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 118.8,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 88.139277008295,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 154812650,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00378_23H5VFLT4_s24_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 69.80505822999886,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 177513010,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00378_23H5VFLT4_s24_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 50,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 50,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 116.6254452512989,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 116.6254452512989,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 71.37690775942926,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 71.37690775942926,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 175645473,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 175645473,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00378_23H5VFLT4_s24_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 50,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 50,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 116.71246788125305,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 116.71246788125305,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 70.36630420206333,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 70.36630420206333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 175645473,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 175645473,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00388_23H5VFLT4_s22",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976178,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8972,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.004698,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 164,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 151,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976991,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.451905,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.127,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.292,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.039,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 578539185,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.39,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 41.3243255,
"fastp_mqc-generalstats-fastp-pct_duplication": 33.123799999999996,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.358,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.57,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.559,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.931,
"fastp_mqc-generalstats-fastp-pct_surviving": 99.076093,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 594456558,
"STAR_mqc-generalstats-star-uniquely_mapped": 286485307,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.779723,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.107238,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.884223,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 621.58895,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 327,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.676691,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.092188,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.907812,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 14902809,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 146753224,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 35075564,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 289212101,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 466249784,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.449782,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 327080551,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.54695,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 79462557888,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 594456558,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.35088532272138
},
{
"Sample": "tih_rna_sample_00388_23H5VFLT4_s22_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.64261672583557,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 549532751,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 164,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 94.19252903590643,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 279966833,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00388_23H5VFLT4_s22_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.10539184558233,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 549532751,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00388_23H5VFLT4_s22_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.9082658854274,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.9082658854274,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.46725911755706,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.46725911755706,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297228279,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297228279,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00388_23H5VFLT4_s22_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.948691500515,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.948691500515,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.60972539882201,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.60972539882201,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297228279,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297228279,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00394_23H5VFLT4_s25",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976354,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8892,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008396,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 126.3,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 119,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977751,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.584004,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.169,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.396,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 4.871,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 370238880,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.71,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 71.41100893798931,
"fastp_mqc-generalstats-fastp-pct_duplication": 35.9594,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.285,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.429,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.533,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.732,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.71905677147632,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 386626392,
"STAR_mqc-generalstats-star-uniquely_mapped": 183087626,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.672441,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.270729,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.709324,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 191.371726,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 94,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.488354,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.268786,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.731214,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21374528,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 58147876,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 44055905,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 115428839,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 198626534,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.5791,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 162730870,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.537878,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 45625978440,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 386626392,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.6947371420055
},
{
"Sample": "tih_rna_sample_00394_23H5VFLT4_s25_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 73.10420214546,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 195821559,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 126.3,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 87.77082243262898,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 169672582,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00394_23H5VFLT4_s25_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 72.08733354668959,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 195821559,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00394_23H5VFLT4_s25_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 120.803727594468,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 120.803727594468,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 73.19066081766027,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 73.19066081766027,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 193313196,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 193313196,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00394_23H5VFLT4_s25_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 120.92029575673665,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 120.92029575673665,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 72.87877303995991,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 72.87877303995991,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 193313196,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 193313196,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00396_23H5VFLT4_s26",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977138,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8875,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005403,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 155.8,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 144,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977945,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.41597,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.309,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.69,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.041,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 574139273,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.75,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 46.59989916666667,
"fastp_mqc-generalstats-fastp-pct_duplication": 29.115299999999998,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.431,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.643,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.997,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.094,
"fastp_mqc-generalstats-fastp-pct_surviving": 99.04160733333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 594249644,
"STAR_mqc-generalstats-star-uniquely_mapped": 284510651,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.747217,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.118805,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.871978,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 630.863741,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 334,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.655575,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.105381,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.894619,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 18137271,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 153973379,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 41391222,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 303793174,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 517451637,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.413722,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 348395334,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.540834,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78149331791,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 594249644,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.02491877204642
},
{
"Sample": "tih_rna_sample_00396_23H5VFLT4_s26_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.61700967712999,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 423555036,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 155.8,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 93.23208075830163,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 277015654,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00396_23H5VFLT4_s26_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.17074195719078,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 423555036,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00396_23H5VFLT4_s26_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.55946264563516,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.55946264563516,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.02754558484864,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.02754558484864,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297124822,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297124822,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00396_23H5VFLT4_s26_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.60009389252573,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.60009389252573,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.20697063626255,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.20697063626255,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297124822,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297124822,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00400_23H5VFLT4_s27",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977434,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8552,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006361,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.3,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 124,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978325,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.499361,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.203,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.42,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.599,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 568270409,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.78,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 64.16470166666667,
"fastp_mqc-generalstats-fastp-pct_duplication": 31.1342,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.383,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.557,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.696,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.1,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.89110666666666,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593346640,
"STAR_mqc-generalstats-star-uniquely_mapped": 281189722,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.758739,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.133007,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.854367,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 465.025701,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 244,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.645062,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.124903,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.875097,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 18386662,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 128820976,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 39760617,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 255402144,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 368397903,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.496185,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 298937124,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.540532,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72529228559,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593346640,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.07625301204939
},
{
"Sample": "tih_rna_sample_00400_23H5VFLT4_s27_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.12561001212015,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 415540005,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 131.3,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 93.37340715370024,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 277013987,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00400_23H5VFLT4_s27_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.38989821571786,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 415540005,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00400_23H5VFLT4_s27_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.01993223725005,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.01993223725005,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.5147364758032,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.5147364758032,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296673320,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296673320,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00400_23H5VFLT4_s27_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.08606880456928,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.08606880456928,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.43148549633892,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.43148549633892,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296673320,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296673320,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00402_23H5VFLT4_s28",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975898,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9103,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005498,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 133,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976738,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.446754,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.196,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.437,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.04,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 572679083,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.26,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 56.55833783333334,
"fastp_mqc-generalstats-fastp-pct_duplication": 29.102,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.332,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.517,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.121,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.553,
"fastp_mqc-generalstats-fastp-pct_surviving": 99.09810066666667,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 594588604,
"STAR_mqc-generalstats-star-uniquely_mapped": 283203560,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.765076,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.13897,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.851137,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 542.834544,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 289,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.661912,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.12887,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.87113,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21029946,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 142157658,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 45917720,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 281227425,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 496137382,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.444298,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 330414013,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.531019,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75250850701,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 594588604,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.9528123309666
},
{
"Sample": "tih_rna_sample_00402_23H5VFLT4_s28_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.72086200119435,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 395354862,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 143,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 92.46207954567525,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 274884494,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00402_23H5VFLT4_s28_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.32859753217113,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 395354862,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00402_23H5VFLT4_s28_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.65303221317708,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.65303221317708,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.55554325513887,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.55554325513887,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297294302,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297294302,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00402_23H5VFLT4_s28_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.70405267639472,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.70405267639472,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.88476627394061,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.88476627394061,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297294302,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 297294302,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00403_23H5VFLT4_s29",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976911,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8779,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006111,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 132.8,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 124,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977955,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.545386,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.193,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.414,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.505,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 576157495,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.84,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 64.19775666666668,
"fastp_mqc-generalstats-fastp-pct_duplication": 34.7279,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.364,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.52,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.634,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.969,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.96251833333334,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593775110,
"STAR_mqc-generalstats-star-uniquely_mapped": 284550111,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.736574,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.172461,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.814195,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 396.801298,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 186,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.605711,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.164349,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.835651,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21990043,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 111810853,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 46895155,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 221393725,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 304504091,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.542054,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 271917188,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.539482,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72689721234,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593775110,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.1849414967196
},
{
"Sample": "tih_rna_sample_00403_23H5VFLT4_s29_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.72040019201361,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 323033837,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 132.8,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 91.53171711761378,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 271746277,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00403_23H5VFLT4_s29_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.92796112445447,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 323033837,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00403_23H5VFLT4_s29_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.26637692509543,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.26637692509543,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.1516449903331,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.1516449903331,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296887555,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296887555,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00403_23H5VFLT4_s29_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.34649449351288,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.34649449351288,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.02501411642693,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.02501411642693,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296887555,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296887555,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00407_23H5VFLT4_s33",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97548,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8811,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007449,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 141.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 131,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97691,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.718362,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.123,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.26,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.045,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 545503337,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.01,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 57.0103562339216,
"fastp_mqc-generalstats-fastp-pct_duplication": 50.2587,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.356,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.544,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.523,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.642,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.68928480117482,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 568787934,
"STAR_mqc-generalstats-star-uniquely_mapped": 270215283,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.6957,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.212304,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.761741,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 230.07303,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 111,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.521832,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.205228,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.794772,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 16246801,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 62917849,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 34655631,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 124343412,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 159526493,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.713011,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 163235783,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.569151,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71694540954,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 568787934,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.16113416470793
},
{
"Sample": "tih_rna_sample_00407_23H5VFLT4_s33_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.14472458805287,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 288171069,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 141.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 92.30597321355977,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 262512619,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00407_23H5VFLT4_s33_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.02437148410087,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 288171069,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00407_23H5VFLT4_s33_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.137608203904,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.137608203904,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.26222142216416,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.26222142216416,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 284393967,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 284393967,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00407_23H5VFLT4_s33_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.28245459581075,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.28245459581075,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.05423931017684,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.05423931017684,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 284393967,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 284393967,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00410_23H5VFLT4_s34",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976426,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.887,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006906,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 132.2,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 124,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97747,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.692164,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.051,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.101,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.047,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 530341840,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.07,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 66.22452378154966,
"fastp_mqc-generalstats-fastp-pct_duplication": 46.4339,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.403,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.601,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.758,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.303,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.56719570598412,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 551546748,
"STAR_mqc-generalstats-star-uniquely_mapped": 262190469,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.672601,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.264922,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.712986,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 209.796783,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 101,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.502922,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.261336,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.738664,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 21953944,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 62052737,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 45678563,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 122934710,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 177363137,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.687384,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 172422442,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.531746,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 67127247344,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 551546748,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.33018236946647
},
{
"Sample": "tih_rna_sample_00410_23H5VFLT4_s34_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.52895550727118,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 279782104,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 132.2,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 90.58748615810894,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 249816167,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00410_23H5VFLT4_s34_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.83958312215796,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 279782104,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00410_23H5VFLT4_s34_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.59912034509901,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.59912034509901,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.6157141262852,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.6157141262852,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 275773374,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 275773374,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00410_23H5VFLT4_s34_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.67948840485231,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.67948840485231,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.69778399198607,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.69778399198607,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 275773374,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 275773374,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00414_23H5VFLT4_s40",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976668,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9344,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006984,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 147.6,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 136,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977575,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.456556,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.101,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.211,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.928,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 569443088,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.98,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 54.107288499999996,
"fastp_mqc-generalstats-fastp-pct_duplication": 31.4219,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.377,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.579,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.756,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.353,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.94706333333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593682380,
"STAR_mqc-generalstats-star-uniquely_mapped": 281944764,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.761781,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.131355,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.85587,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 542.828263,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 265,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.650759,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.120106,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.879894,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 19183451,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 140537932,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 42628037,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 277751836,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 430530897,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.453368,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 324525906,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.563204,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75747671346,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593682380,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.01785319520387
},
{
"Sample": "tih_rna_sample_00414_23H5VFLT4_s40_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.44025452905281,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 364266339,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 147.6,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 92.49171888847366,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 274553519,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00414_23H5VFLT4_s40_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.46901587794662,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 364266339,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00414_23H5VFLT4_s40_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.59859325115897,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.59859325115897,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.91762040822096,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.91762040822096,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296841190,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296841190,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00414_23H5VFLT4_s40_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.6635222726334,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.6635222726334,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.74678799504781,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.74678799504781,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296841190,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296841190,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00419_23H5VFLT4_s44",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976842,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9078,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.004817,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 147.8,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977681,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.443828,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.233,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.496,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.137,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 573585445,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.8,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 52.52650783333333,
"fastp_mqc-generalstats-fastp-pct_duplication": 29.783700000000003,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.489,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.723,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.094,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.278,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.90791133333333,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 593447468,
"STAR_mqc-generalstats-star-uniquely_mapped": 284254058,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.7349,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.113755,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.877618,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 578.337429,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 274,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.63265,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.101366,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.898634,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 16597433,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 147140715,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 37689982,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 290778799,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 448556434,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.441691,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 331327275,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546908,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76026034344,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 593447468,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.67575250796908
},
{
"Sample": "tih_rna_sample_00419_23H5VFLT4_s44_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.44607817402654,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 434454227,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 147.8,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 93.93746238041074,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 278734746,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00419_23H5VFLT4_s44_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.18072185465843,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 434454227,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00419_23H5VFLT4_s44_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.11044656441268,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.11044656441268,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.58928772045378,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.58928772045378,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296723734,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296723734,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00419_23H5VFLT4_s44_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.16970880394757,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.16970880394757,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.17872103182475,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 78.17872103182475,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296723734,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 296723734,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00420_23H5VFLT4_s45",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975156,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9382,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008235,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97652,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.767552,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.109,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.233,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.057,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 372125744,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 61.45452121564904,
"fastp_mqc-generalstats-fastp-pct_duplication": 53.3915,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.196,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.318,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.277,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 0.918,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.27294316131068,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 389910420,
"STAR_mqc-generalstats-star-uniquely_mapped": 184386187,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.593004,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.349817,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.615696,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 99.713294,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 48,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.311912,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.351622,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.648378,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 15723102,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 28992777,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 32567328,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 57320191,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 108401346,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.761232,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 93098276,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.55749,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 48206709387,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 389910420,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.90885745822175
},
{
"Sample": "tih_rna_sample_00420_23H5VFLT4_s45_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.00321171411717,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 198381369,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 136.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 89.87473020084973,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 175215469,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00420_23H5VFLT4_s45_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.29545958260034,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 198381369,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00420_23H5VFLT4_s45_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.71360077014613,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.71360077014613,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.08166841595029,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.08166841595029,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 194955210,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 194955210,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00420_23H5VFLT4_s45_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.8438020250908,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.8438020250908,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.31572199147841,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.31572199147841,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 194955210,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 194955210,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00422_23H5VFLT4_s47",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975289,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.904,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.011686,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 109.1,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 104,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976943,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.74178,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.462,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.945,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.942,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 158673388,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 92.64,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 84.66981912328232,
"fastp_mqc-generalstats-fastp-pct_duplication": 40.0543,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.348,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.522,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.936,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.838,
"fastp_mqc-generalstats-fastp-pct_surviving": 97.01526259572867,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 169264240,
"STAR_mqc-generalstats-star-uniquely_mapped": 78401787,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.293586,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.459127,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.497089,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 30.650176,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 12,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.057575,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.475666,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.524333,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 10235737,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 11282989,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 20740848,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 22455775,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 61455637,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.733112,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 45174579,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545479,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 17953533098,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 169264240,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 78.30432503560448
},
{
"Sample": "tih_rna_sample_00422_23H5VFLT4_s47_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 75.93714259443075,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 87235882,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 109.1,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 85.39577054196444,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 72272251,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00422_23H5VFLT4_s47_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 74.54823697607605,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 45.45454545454545,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 87235882,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00422_23H5VFLT4_s47_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 108.6750109296565,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 108.6750109296565,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 75.57854403066843,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 75.57854403066843,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 84632120,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 84632120,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 107,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 107,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00422_23H5VFLT4_s47_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 108.82736043951162,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 108.82736043951162,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 75.06987706538739,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 75.06987706538739,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 84632120,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 84632120,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 107,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 107,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00425_23H5VFLT4_s46",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974277,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8813,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009666,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 124.9,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 118,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975976,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.719108,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.073,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.172,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.1,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 442167034,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.22,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 72.44629489470704,
"fastp_mqc-generalstats-fastp-pct_duplication": 45.3114,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.212,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.357,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.533,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.788,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.2471756331841,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 464587216,
"STAR_mqc-generalstats-star-uniquely_mapped": 218869413,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.627058,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.341815,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.624604,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 134.22903,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 62,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.387368,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.346552,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.653448,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 22307382,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 42062134,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 45710358,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 83527122,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 146416358,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.712157,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 133728172,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.566924,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 54356781237,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 464587216,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 83.23228099029446
},
{
"Sample": "tih_rna_sample_00425_23H5VFLT4_s46_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.86687616382616,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 236437950,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 124.9,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 88.34533535679553,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 205220567,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00425_23H5VFLT4_s46_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.3474102984902,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 236437950,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00425_23H5VFLT4_s46_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 119.99434217320349,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 119.99434217320349,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.92033095452337,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.92033095452337,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 232293608,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 232293608,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00425_23H5VFLT4_s46_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 120.17213704390868,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 120.17213704390868,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.34295084505248,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.34295084505248,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 232293608,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 232293608,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00426_23H5VFLT4_s48",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973685,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8921,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008773,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 141.8,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No",
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975502,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.656057,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.221,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.458,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.982,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 536156844,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": 92.51,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
"fastp_mqc-generalstats-fastp-pct_adapter": 56.49069764527048,
"fastp_mqc-generalstats-fastp-pct_duplication": 44.9317,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.269,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.444,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.914,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.777,
"fastp_mqc-generalstats-fastp-pct_surviving": 98.28046880559818,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 574610528,
"STAR_mqc-generalstats-star-uniquely_mapped": 265799790,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.67526,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.184713,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.7902,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 296.196997,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 121,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.531405,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.175846,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.824154,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 17142577,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 80343547,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 37116244,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 158783184,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 193132951,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.650301,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 200940478,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.583614,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72397717747,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 574610528,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 77.1273966066957
},
{
"Sample": "tih_rna_sample_00426_23H5VFLT4_s48_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.90973003107013,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292332004,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": 141.8,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": 91.4843335414836,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 262839306,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00426_23H5VFLT4_s48_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.73587154858895,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292332004,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00426_23H5VFLT4_s48_trimmed_1",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.29906815421245,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.29906815421245,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.0571746101939,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.0571746101939,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 287305264,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 287305264,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
},
{
"Sample": "tih_rna_sample_00426_23H5VFLT4_s48_trimmed_2",
"fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
"Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
"Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
"Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
"Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
"STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
"fastp_mqc-generalstats-fastp-pct_adapter": null,
"fastp_mqc-generalstats-fastp-pct_duplication": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
"Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
"fastp_mqc-generalstats-fastp-pct_surviving": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
"STAR_mqc-generalstats-star-uniquely_mapped": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.48712505664358,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.48712505664358,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.03173342001263,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.03173342001263,
"FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
"FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 287305264,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 287305264,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
"Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
"Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
"fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
"fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
"fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
"FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142,
"FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142,
"Kallisto_mqc-generalstats-kallisto-fragment_length": null,
"Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
"Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
"RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
}
]
}