File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001_exp0003/B23H5VFLT4/nfcore_rnafusion__73d51683--20260607-225254/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0001_exp0003_73d51683
- Published
- Jun 08, 2026 5:15 AM
Content
View in new tab| sample_id | AFTER_FILTERING_Q30_RATE | CONTAMINATION_PCT | FRAC_ANTISENSE | FRAC_UNMAPPED | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | IS_CONTAMINATED | N_Q30 | PERCENT_DUPLICATION | PCT_MITO_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE | UNIQUE_READS_RSEQC | UNIQUELY_MAPPED_PERCENT | GC_BIAS | PCT_ADAPTER | PCT_DUPLICATION | PCT_HK_EST_COUNTS | PCT_HK_TPM | PCT_MALE_EST_COUNTS | PCT_MALE_TPM | PCT_RIBO_EST_COUNTS | RIBOSOMAL_CONTAMINATION | PCT_SURVIVING | PERCENT_GC | READS | MAPPED_READS | AVG_SEQUENCE_LENGTH | PERCENT_DUPLICATES | PERCENT_FAILS | TOTAL_SEQUENCES | FRAC_BASES_GT30X | FRAC_READS_OFF_TARGET | FRAC_READS_ON_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT100X | FRAC_PAIRS_OFF_TARGET | FRAC_PAIRS_ON_TARGET | PAIRS_OFF_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | READS_ON_TARGET | EXPECTED_DISTINCT | FRAC_DUPES | UNIQUE_READS | TOTAL_READS | AFTER_FILTERING_GC_CONTENT | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | FRAGMENT_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_ALIGNED | PROPER_PAIRS_PERCENT | PSEUDOALIGNED_READS |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | 0.976282 | 63.71 | 0.9263 | 0.004234 | 172.7 | 157.0 | Yes | 0.977047 | 0.455875 | 0.106 | 0.213 | 4.227 | 575935933.0 | 96.26 | 0.0 | 36.755558 | 34.6476 | 0.561 | 0.795 | 0.0 | 0.0 | 1.142 | 3.337 | 98.91845066666667 | 593510704.0 | 285650844.0 | 0.714951 | 0.097927 | 0.89432 | 645.840292 | 274.0 | 0.61725 | 0.079814 | 0.920186 | 12787334.0 | 147427510.0 | 31737137.0 | 289839374.0 | 426168763.0 | 0.453945 | 324089247.0 | 9999000000.0 | 0.547408 | 80285839825.0 | 593510704.0 | 90.01821790117157 | |||||||||
| NTC_0001_0001_23H5VFLT4_s15 | 0.895677 | N/A | 0.4199 | 0.349003 | 32.9 | 31.0 | Skipped | 0.922564 | 0.648042 | 0.0 | 0.0 | 0.0 | 8272.0 | 9.17 | 0.0 | 55.950172468767214 | 43.6114 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 17.604858111829326 | 72882.0 | 3342.0 | 0.0 | 0.386258 | 0.010063 | 0.000152 | 0.0 | 0.0 | 0.976402 | 0.023598 | 7903.0 | 191.0 | 16275.0 | 424.0 | 36700.0 | 0.421874 | 42135.0 | 9999000000.0 | 0.67862 | 4257329.0 | 72882.0 | 1.83612490030118 |
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