File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001_exp0003/B23H5VFLT4/nfcore_rnafusion__73d51683--20260607-225254/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp0001_exp0003_73d51683
- Published
- Jun 08, 2026 5:16 AM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 78.4712 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 94.2677 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 89.6027 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9667.394168034 | bclconvert | |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 487077937 | bclconvert |
| NTC_0001_0001_23H5VFLT4_s15 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 206994 | bclconvert |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 593510704.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.89432 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.920186 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.097927 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.079814 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 289839374.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 147427510.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 31737137.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 12787334.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 285650844.0 | star |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.004234 | star |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 157.0 | kallisto |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.213 | kallisto |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 3.337 | kallisto |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 63.71 | contamination |
| NTC_0001_0001_23H5VFLT4_s15 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 72882.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 71 | fusion |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 71 | fusion |
28 rows