.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INFEREXPERIMENT (tih_rna_sample_00117_23H5VFLT4_s37)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/27395ad546df842070ae90ea24f629/.command.log
Size: 950 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INFEREXPERIMENT (tih_rna_sample_00117_23H5VFLT4_s37)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/27395ad546df842070ae90ea24f629/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/27395ad546df842070ae90ea24f629/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/6ff4092dd52ec3d8c9234b96f1d6b6/tih_rna_sample_00117_23H5VFLT4_s37.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/a55977f5eeb50e489ed7349394b583/tih_rna_sample_00117_23H5VFLT4_s37.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00117_23H5VFLT4_s37.Aligned.sortedByCoord.out.bam.bai
Reading reference gene model ref_annot.bed ... Done
Loading SAM/BAM file ...  Total 200000 usable reads were sampled